RLG00000008360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003287
Physical Location & Seq
Reverse (-)
29452849 .. 29454909
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008360

Sequence Viewer

Length: 804 bp
ATGACTTATCCCAAACAACCTGCCCACAACTCAACGGGGGGAAAGACTCCAAAGAGGCTTCTCGTAACCAAAAGTAATTCTCCCACTCCAACTAGGAAGCGGATCAGCCCCAAGCTTTCAATAGCATTGGAGGCGGAATTGATTACTGTGATACAGGAGGCAAAACATCTGATTTCTTCCCCCGCCTTTTCTCCACACTTCTCTTCCACCGACCCAGTAAAACTTCAAGGAGCCATAGACATCATTCAAAGCATTCTAAAGTGTGACATTGATGCCTTACTGGACAAACAGTGTTACAAAGAATTGAAAGAAGCTTTCGATTATCTGTGCTCTATTGGTTTTTTTGATCCAATTATGGTCCTAAGACTTGACCGGATGCTTAACGATGTGGAGACTGAACTACCGCACTATAAAGAAGCTATAAATGAATGCGTTACGGGCCGAGAACAGGCAAAGGACCTTCAACATGCACTAAAATCTCTGAAAGCTAAGCTGGAGGCTGCTTGTGCTACAAAACCAAGAATTATTGAACTTGAAAACGAGCTGCATGATCTTAATGAGCAAATTGAGGCTCTTCAGGCTCAATTTGCAGATTGTCAGAGCCAGAGAGAAGCCCTTGAGGCTAATTTGGATGCTGAACTGGATAAGCTTCGTCCAGAAAAGGAGGCACTCCAGGGTAAATGCAAGTTGTTTACTGCTTTCAAGGCAAGATTGCCAGAAATGAAGAACCGTATCAACGCAGGGATTGGTGTGTGGGAAGCCTTTAAGACAGCTTTGAATATCCAATTTAGAGGTTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.04

Weight (kDa)

7.0

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AciI CCGC 4 cut(s) 100, 134, 183, 404
AclWI GGATC 2 cut(s) 110, 341
AcuI CTGAAG 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 9 cut(s) 120, 227, 248, 307, 464, 530, 536, 703, 778
AjnI CCWGG 1 cut(s) 672
AluBI AGCT 8 cut(s) 115, 314, 419, 488, 493, 544, 649, 773
AluI AGCT 8 cut(s) 115, 314, 419, 488, 493, 544, 649, 773
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 2 cut(s) 110, 341
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 2 cut(s) 500, 544
AspS9I GGNCC 3 cut(s) 358, 439, 457
AvaII GGWCC 2 cut(s) 358, 457
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 487, 531
BciT130I CCWGG 1 cut(s) 674
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 620
BisI GCNGC 2 cut(s) 501, 545
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 2 cut(s) 502, 546
Bme1390I CCNGG 1 cut(s) 674
Bme18I GGWCC 2 cut(s) 358, 457
BmgT120I GGNCC 3 cut(s) 358, 439, 457
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 674
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 3 cut(s) 262, 366, 622
BmuI ACTGGG 1 cut(s) 209
BpmI CTGGAG 2 cut(s) 515, 656
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 673
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse1I ACTGG 3 cut(s) 215, 285, 645
BseBI CCWGG 1 cut(s) 674
BseDI CCNNGG 1 cut(s) 673
BseGI GGATG 2 cut(s) 381, 637
BseLI CCNNNNNNNGG 1 cut(s) 448
BseNI ACTGG 3 cut(s) 215, 285, 645
BseXI GCAGC 2 cut(s) 487, 531
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 386
BsmI GAATGC 2 cut(s) 252, 434
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 102, 346, 550
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 4 cut(s) 100, 134, 183, 404
BspANI GGCC 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 2 cut(s) 110, 341
BspQI GCTCTTC 1 cut(s) 579
BsrI ACTGG 3 cut(s) 215, 285, 645
BssECI CCNNGG 1 cut(s) 673
BssMI GATC 3 cut(s) 102, 346, 550
Bst2UI CCWGG 1 cut(s) 674
Bst4CI ACNGT 3 cut(s) 148, 291, 731
Bst6I CTCTTC 2 cut(s) 208, 579
BstDEI CTNAG 2 cut(s) 362, 489
BstF5I GGATG 2 cut(s) 381, 637
BstKTI GATC 3 cut(s) 105, 349, 553
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 3 cut(s) 102, 346, 550
BstMWI GCNNNNNNNGC 7 cut(s) 131, 438, 506, 578, 587, 620, 704
BstNI CCWGG 1 cut(s) 674
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 487, 531
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 2 cut(s) 381, 637
BtsIMutI CAGTG 1 cut(s) 296
BveI ACCTGC 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 358, 439, 457
CviAII CATG 2 cut(s) 467, 548
DdeI CTNAG 2 cut(s) 362, 489
DpnI GATC 3 cut(s) 104, 348, 552
DpnII GATC 3 cut(s) 102, 346, 550
Eam1104I CTCTTC 2 cut(s) 208, 579
EarI CTCTTC 2 cut(s) 208, 579
EciI GGCGGA 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 358, 457
Eco57I CTGAAG 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 672
FaeI CATG 2 cut(s) 470, 551
FaiI YATR 6 cut(s) 236, 356, 411, 422, 468, 549
FatI CATG 2 cut(s) 466, 547
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 501, 545
FokI GGATG 2 cut(s) 388, 644
Fsp4HI GCNGC 2 cut(s) 501, 545
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 501, 545
GsuI CTGGAG 2 cut(s) 515, 656
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 373
Hin1II CATG 2 cut(s) 470, 551
HindIII AAGCTT 3 cut(s) 113, 312, 647
HinfI GANTC 1 cut(s) 46
HpaII CCGG 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 3 cut(s) 171, 483, 600
Hpy188III TCNNGA 1 cut(s) 656
Hpy8I GTNNAC 1 cut(s) 693
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 3 cut(s) 148, 291, 731
HpyCH4V TGCA 4 cut(s) 470, 547, 590, 684
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 438, 506, 578, 587, 620, 704
HpyF3I CTNAG 2 cut(s) 362, 489
Hsp92II CATG 2 cut(s) 470, 551
Kzo9I GATC 3 cut(s) 102, 346, 550
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 2 cut(s) 487, 531
LweI GCATC 3 cut(s) 262, 366, 622
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 4 cut(s) 64, 263, 293, 433
MalI GATC 3 cut(s) 104, 348, 552
MboI GATC 3 cut(s) 102, 346, 550
MboII GAAGA 4 cut(s) 168, 195, 566, 736
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 9 cut(s) 76, 137, 302, 351, 522, 564, 584, 625, 785
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 8 cut(s) 48, 124, 151, 490, 562, 613, 658, 785
MseI TTAA 4 cut(s) 381, 555, 765, 798
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 674
Mva1269I GAATGC 2 cut(s) 252, 434
MvaI CCWGG 1 cut(s) 674
MwoI GCNNNNNNNGC 7 cut(s) 131, 438, 506, 578, 587, 620, 704
NdeII GATC 3 cut(s) 102, 346, 550
NlaIII CATG 2 cut(s) 470, 551
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 470
PciSI GCTCTTC 1 cut(s) 579
PctI GAATGC 2 cut(s) 252, 434
PkrI GCNGC 2 cut(s) 502, 546
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 3 cut(s) 358, 439, 457
PspPPI RGGWCCY 1 cut(s) 457
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 4 cut(s) 381, 555, 765, 798
SatI GCNGC 2 cut(s) 501, 545
Sau3AI GATC 3 cut(s) 102, 346, 550
Sau96I GGNCC 3 cut(s) 358, 439, 457
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 674
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 3 cut(s) 262, 366, 622
SinI GGWCC 2 cut(s) 358, 457
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 9 cut(s) 76, 137, 302, 351, 522, 564, 584, 625, 785
SsiI CCGC 4 cut(s) 100, 134, 183, 404
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 672
TaaI ACNGT 3 cut(s) 148, 291, 731
TaqI TCGA 1 cut(s) 318
TasI AATT 9 cut(s) 76, 137, 302, 351, 522, 564, 584, 625, 785
Tru1I TTAA 4 cut(s) 381, 555, 765, 798
Tru9I TTAA 4 cut(s) 381, 555, 765, 798
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 500, 544
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 441, 737
TspRI CASTG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 358, 457
XceI RCATGY 1 cut(s) 470
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.