Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

32270612 .. 32272915

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTCGTATTCTTAGACACTGGCGCAGCACTTCTTCTAATCAAACCTGCCCACAACTCAACTGGGGAAAAGAATCCAAAGAGGCTTCTCGTAACCAAAAGTAATTCTCCCACTCCAACTAGGAAGCGGATCAGCCCCAAGCTTTCGATAGCATTGGAGGCAGAATTGATGACTGTGATACAGGAGGCAAAACATCTGATTTCTTCCCCCGCCTTTTCTCCACACTTTTCTTCCACTGACCCAGGAAAACTTCAAGGAGCCATAGACATCATTCAAAGCATTCTAAAGTGTGACATTGAAGCCTTACTGGACAAACAGTGTTACAAAGAATTGAAAGAAGCTTTCGAGTATCTGTGCTCTATTGGTTTTTTTGATCCAATTATGGTCCTAAGACTTGACCGGATGCTTAACGATGTGGAGACTGAACTACCGCACTATAAAGAAGCTATAGATGAATGCGTTACAGGCCGAGAACAGGCAAAGGACCTTCAACATGCACTAAAATCTCTGAAAGCTAAGCTGGAGGCTGCTTGTGCTACAAAACCTAGAATTATTGAACTTGAAAATGAGCTGCACGATCTTAATGAGCATATTGAGGCTCTTCAGGCTCAATTTGCAGATTGTCAGAGCCAGAGAGAAGCCCTTGAGGCTAATTTGGATGCTGAACTGGATAAGCTTCGTCCAGAAAAGGAGGCACTCCAGGGTAAATGCAAGTTGTTTACTGCTTTCAAGGCAAGATTGCCTGAAATGAAGAATCGTATCAACGCGGGGATTGGTGTGTGGGAAGCCTTTAAGGCAGCTTTGAATATCCAATTTAGAGGTTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.97

Weight (kDa)

6.27

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
AccII	CGCG	1 cut(s)	767
AciI	CCGC	4 cut(s)	127, 210, 431, 767
AclWI	GGATC	2 cut(s)	137, 368
AcuI	CTGAAG	1 cut(s)	587
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	9 cut(s)	254, 275, 299, 334, 491, 557, 563, 730, 805
AjnI	CCWGG	2 cut(s)	241, 699
AluBI	AGCT	8 cut(s)	142, 341, 446, 515, 520, 571, 676, 800
AluI	AGCT	8 cut(s)	142, 341, 446, 515, 520, 571, 676, 800
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	137, 368
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	4 cut(s)	26, 527, 571, 797
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	385, 484
AvaII	GGWCC	2 cut(s)	385, 484
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	38, 514, 558, 809
BciT130I	CCWGG	2 cut(s)	243, 701
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	120, 546
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	55
BglI	GCCNNNNNGGC	2 cut(s)	647, 794
BisI	GCNGC	4 cut(s)	27, 528, 572, 798
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	4 cut(s)	28, 529, 573, 799
Bme1390I	CCNGG	2 cut(s)	243, 701
Bme18I	GGWCC	2 cut(s)	385, 484
BmgT120I	GGNCC	2 cut(s)	385, 484
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	243, 701
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	393, 649
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	2 cut(s)	542, 683
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	665
BsaJI	CCNNGG	2 cut(s)	241, 700
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	4 cut(s)	25, 67, 312, 672
BseBI	CCWGG	2 cut(s)	243, 701
BseDI	CCNNGG	2 cut(s)	241, 700
BseGI	GGATG	2 cut(s)	408, 664
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseNI	ACTGG	4 cut(s)	25, 67, 312, 672
BseXI	GCAGC	4 cut(s)	38, 514, 558, 809
BsgI	GTGCAG	1 cut(s)	557
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	2 cut(s)	279, 461
BsnI	GGCC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	129, 373, 577
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	4 cut(s)	127, 210, 431, 767
BspANI	GGCC	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	2 cut(s)	137, 368
BspQI	GCTCTTC	1 cut(s)	606
BsrI	ACTGG	4 cut(s)	25, 67, 312, 672
BssECI	CCNNGG	2 cut(s)	241, 700
BssMI	GATC	3 cut(s)	129, 373, 577
Bst2UI	CCWGG	2 cut(s)	243, 701
Bst4CI	ACNGT	2 cut(s)	175, 318
Bst6I	CTCTTC	1 cut(s)	606
BstDEI	CTNAG	3 cut(s)	13, 389, 516
BstF5I	GGATG	2 cut(s)	408, 664
BstFNI	CGCG	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	132, 376, 580
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	3 cut(s)	129, 373, 577
BstMWI	GCNNNNNNNGC	8 cut(s)	158, 465, 533, 605, 614, 647, 731, 794
BstNI	CCWGG	2 cut(s)	243, 701
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	241, 699
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	4 cut(s)	38, 514, 558, 809
BsuRI	GGCC	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	408, 664
BtsIMutI	CAGTG	3 cut(s)	18, 234, 323
BveI	ACCTGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	385, 484
CviAII	CATG	1 cut(s)	494
DdeI	CTNAG	3 cut(s)	13, 389, 516
DpnI	GATC	3 cut(s)	131, 375, 579
DpnII	GATC	3 cut(s)	129, 373, 577
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	385, 484
Eco57I	CTGAAG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	241, 699
FaeI	CATG	1 cut(s)	497
FaiI	YATR	6 cut(s)	263, 383, 438, 449, 495, 591
FatI	CATG	1 cut(s)	493
FauI	CCCGC	2 cut(s)	217, 760
Fnu4HI	GCNGC	4 cut(s)	27, 528, 572, 798
FokI	GGATG	2 cut(s)	415, 671
Fsp4HI	GCNGC	4 cut(s)	27, 528, 572, 798
FspBI	CTAG	2 cut(s)	120, 546
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	27, 528, 572, 798
GsuI	CTGGAG	2 cut(s)	542, 683
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	497
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HindIII	AAGCTT	3 cut(s)	140, 339, 674
HinfI	GANTC	2 cut(s)	73, 754
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	3 cut(s)	198, 510, 627
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	175, 318
HpyCH4V	TGCA	4 cut(s)	497, 574, 617, 711
HpyF10VI	GCNNNNNNNGC	8 cut(s)	158, 465, 533, 605, 614, 647, 731, 794
HpyF3I	CTNAG	3 cut(s)	13, 389, 516
Hsp92II	CATG	1 cut(s)	497
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	129, 373, 577
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	4 cut(s)	38, 514, 558, 809
LweI	GCATC	2 cut(s)	393, 649
MaeI	CTAG	2 cut(s)	120, 546
MaeIII	GTNAC	4 cut(s)	91, 290, 320, 460
MalI	GATC	3 cut(s)	131, 375, 579
MboI	GATC	3 cut(s)	129, 373, 577
MboII	GAAGA	5 cut(s)	26, 195, 222, 593, 763
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	8 cut(s)	103, 164, 329, 378, 549, 611, 652, 812
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	8 cut(s)	75, 151, 178, 517, 589, 640, 685, 812
MseI	TTAA	3 cut(s)	408, 582, 792
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	243, 701
Mva1269I	GAATGC	2 cut(s)	279, 461
MvaI	CCWGG	2 cut(s)	243, 701
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	8 cut(s)	158, 465, 533, 605, 614, 647, 731, 794
NdeII	GATC	3 cut(s)	129, 373, 577
NlaIII	CATG	1 cut(s)	497
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	2 cut(s)	279, 461
PfeI	GAWTC	2 cut(s)	73, 754
PkrI	GCNGC	4 cut(s)	28, 529, 573, 799
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	2 cut(s)	241, 699
PspGI	CCWGG	2 cut(s)	241, 699
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	385, 484
PspPPI	RGGWCCY	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	408, 582, 792
SatI	GCNGC	4 cut(s)	27, 528, 572, 798
Sau3AI	GATC	3 cut(s)	129, 373, 577
Sau96I	GGNCC	2 cut(s)	385, 484
ScrFI	CCNGG	2 cut(s)	243, 701
SduI	GDGCHC	1 cut(s)	359
SfaNI	GCATC	2 cut(s)	393, 649
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	385, 484
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	8 cut(s)	103, 164, 329, 378, 549, 611, 652, 812
SsiI	CCGC	4 cut(s)	127, 210, 431, 767
SspMI	CTAG	2 cut(s)	120, 546
StyD4I	CCNGG	2 cut(s)	241, 699
TaaI	ACNGT	2 cut(s)	175, 318
TaqI	TCGA	2 cut(s)	146, 345
TasI	AATT	8 cut(s)	103, 164, 329, 378, 549, 611, 652, 812
TfiI	GAWTC	2 cut(s)	73, 754
Tru1I	TTAA	3 cut(s)	408, 582, 792
Tru9I	TTAA	3 cut(s)	408, 582, 792
TscAI	CASTG	3 cut(s)	25, 241, 323
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	4 cut(s)	26, 527, 571, 797
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	468, 764
TspRI	CASTG	3 cut(s)	25, 241, 323
VpaK11BI	GGWCC	2 cut(s)	385, 484
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XspI	CTAG	2 cut(s)	120, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.