Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

26229810 .. 26230555

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008144

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACAGCAAATAAATCTCTACTTATTGACATAGATACTTCGGTGACTCCAAGAGTGAGGATGGCTGATGGTAATCTAGCTCAATCTCAAGTTAGAGGTACACTTGTGGTGAAAACAAAGAAGGGTAGAATGTATATCAAGGAAGTGATGATTGTCCCTAATTTGGCTAAAAATTTGTTGAGTGTGGGTCAGCTTATAGAGCATGCCTACTATGTGGATTTTGGAGATAATTCCTGTTCTATTTATGGGAAAAGAGATAGAACTCAACAAATTGCTAAAGTGAAAATGGAAGGAAACGGAAGCTTTCCTATATCCTTAAATTACTCAGCATCTACTCCAAAGAATGTAGATGTTTCAAGGAAGGTAGATGTTCTGAATAATGATTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4219 Retrotran_gag_2 gag_pre-integrs zf-CCHC

Protein Analysis

131

Amino Acids

14.46

Weight (kDa)

9.55

Isoelectric Point (pI)

19.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	1 - 70	3.9e-13	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	357
AluBI	AGCT	3 cut(s)	80, 193, 303
AluI	AGCT	3 cut(s)	80, 193, 303
ApoI	RAATTY	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	55, 121
BaeI	ACNNNNGTAYC	4 cut(s)	27, 60, 90, 123
BccI	CCATC	2 cut(s)	55, 62
BfaI	CTAG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	6 cut(s)	65, 80, 167, 193, 303, 388
CviKI_1	RGCY	6 cut(s)	65, 80, 167, 193, 303, 388
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	1 cut(s)	325
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	32, 135, 197, 204, 213, 246, 311, 391
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	202
FokI	GGATG	1 cut(s)	73
FspBI	CTAG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	1 cut(s)	46
HphI	GGTGA	2 cut(s)	55, 121
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	375
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	115, 284, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	206
LpnPI	CCDG	1 cut(s)	247
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	43
MluCI	AATT	5 cut(s)	160, 172, 229, 270, 319
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	2 cut(s)	51, 89
MseI	TTAA	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	317
SchI	GAGTC	1 cut(s)	40
SetI	ASST	5 cut(s)	82, 100, 195, 305, 366
SfaNI	GCATC	1 cut(s)	338
SgeI	CNNG	8 cut(s)	63, 89, 101, 116, 151, 215, 246, 369
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	5 cut(s)	160, 172, 229, 270, 319
SspMI	CTAG	1 cut(s)	77
TasI	AATT	5 cut(s)	160, 172, 229, 270, 319
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	312
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.