Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

42262092 .. 42264987

Gene Structure 2896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG167500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACTTATCCCAAACAACCTGCCCACAACTCAACTGGGGAAAAGAATCCAAAGAGGCTTCTCGTAACCAAAAGTAATTCTCCCACTCCAACTAGGAAGCGGATCAGCCCCAAGCTTTCAATAGCATTGGAGGCAGAATTGATGACTGTGATACAGGAGGCAAAACATCTGATTTCTTCCCCCGCCTTTTCTCCACACTTTTCTTCCACTGACGACCCAGGAAAACTTCAAGGAGCCATAGACATCATTCAAAGCATTCTAAAGTGTGACATTGAAGCCTTACTGGACAAACAGTGTTACAAAGAATTGAAAGAAGCTTTCGAGTATCTGTGCTCTATTGGTTTTTTTGATCCAATTATGGTCCTAAGACTTGACCGGATGCTTAACGATGTGGAGACTGAACTACCGCACTATAAAGAAGCTATAGATGAATGCGTTACAGGCCGAGAACAGGCAAAGGACCTTCAACATGCACTAAAATCTCTGAAAGCTAAGCTGGAGGCTGCTTGTGCTACAAAACCTAGAATTATTGAACTTGAAAATGAGCTGCATGATCTTAATGAGCAAATTGAGGCTCTTCAGGCTCAATTTGCAGATTGTCAGAGCCAAAGAGAAGCCCTTGAGGCTAATTTGGATGCTGAACTGGATAAGCTTCATCCAGAAAAGGAGGCACTCCAGGGTAAATGCAAGTTGTTTACTGCTTTCAAGGCAAGATTGCCTGAAATGAAGAATCGTATCAACGCGGGGATTGGTGTGTGGGAAGCCTTTAAGGCAGCTTTGAATATCCAATTTAGAGGTTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.22

Weight (kDa)

6.1

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccII	CGCG	1 cut(s)	743
AciI	CCGC	4 cut(s)	100, 183, 407, 743
AclWI	GGATC	2 cut(s)	110, 344
AcuI	CTGAAG	1 cut(s)	563
AfiI	CCNNNNNNNGG	1 cut(s)	451
AjnI	CCWGG	2 cut(s)	217, 675
AluBI	AGCT	8 cut(s)	115, 317, 422, 491, 496, 547, 652, 776
AluI	AGCT	8 cut(s)	115, 317, 422, 491, 496, 547, 652, 776
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	2 cut(s)	110, 344
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	503, 547, 773
AspS9I	GGNCC	2 cut(s)	361, 460
AvaII	GGWCC	2 cut(s)	361, 460
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	490, 534, 785
BciT130I	CCWGG	2 cut(s)	219, 677
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	93, 522
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	28
BglI	GCCNNNNNGGC	2 cut(s)	623, 770
BisI	GCNGC	3 cut(s)	504, 548, 774
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	3 cut(s)	505, 549, 775
Bme1390I	CCNGG	2 cut(s)	219, 677
Bme18I	GGWCC	2 cut(s)	361, 460
BmgT120I	GGNCC	2 cut(s)	361, 460
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	219, 677
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	369, 625
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	518, 659
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	217, 676
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	40, 288, 648
BseBI	CCWGG	2 cut(s)	219, 677
BseDI	CCNNGG	2 cut(s)	217, 676
BseGI	GGATG	3 cut(s)	384, 640, 655
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseNI	ACTGG	3 cut(s)	40, 288, 648
BseXI	GCAGC	3 cut(s)	490, 534, 785
Bsh1236I	CGCG	1 cut(s)	743
BshFI	GGCC	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	2 cut(s)	255, 437
BsnI	GGCC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	102, 349, 553
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	4 cut(s)	100, 183, 407, 743
BspANI	GGCC	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	743
BspLI	GGNNCC	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	110, 344
BspQI	GCTCTTC	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	40, 288, 648
BssECI	CCNNGG	2 cut(s)	217, 676
BssMI	GATC	3 cut(s)	102, 349, 553
Bst2UI	CCWGG	2 cut(s)	219, 677
Bst4CI	ACNGT	2 cut(s)	148, 294
Bst6I	CTCTTC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	365, 492
BstF5I	GGATG	3 cut(s)	384, 640, 655
BstFNI	CGCG	1 cut(s)	743
BstKTI	GATC	3 cut(s)	105, 352, 556
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	102, 349, 553
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 441, 509, 581, 590, 623, 707, 770
BstNI	CCWGG	2 cut(s)	219, 677
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	217, 675
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	3 cut(s)	490, 534, 785
BsuRI	GGCC	1 cut(s)	444
BtsCI	GGATG	3 cut(s)	384, 640, 655
BtsIMutI	CAGTG	2 cut(s)	207, 299
BveI	ACCTGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	361, 460
CviAII	CATG	2 cut(s)	470, 551
DdeI	CTNAG	2 cut(s)	365, 492
DpnI	GATC	3 cut(s)	104, 351, 555
DpnII	GATC	3 cut(s)	102, 349, 553
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	361, 460
Eco57I	CTGAAG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	2 cut(s)	217, 675
FaeI	CATG	2 cut(s)	473, 554
FaiI	YATR	6 cut(s)	239, 359, 414, 425, 471, 552
FatI	CATG	2 cut(s)	469, 550
FauI	CCCGC	2 cut(s)	190, 736
Fnu4HI	GCNGC	3 cut(s)	504, 548, 774
FokI	GGATG	3 cut(s)	391, 642, 647
Fsp4HI	GCNGC	3 cut(s)	504, 548, 774
FspBI	CTAG	2 cut(s)	93, 522
GluI	GCNGC	3 cut(s)	504, 548, 774
GsuI	CTGGAG	2 cut(s)	518, 659
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	376
Hin1II	CATG	2 cut(s)	473, 554
HindIII	AAGCTT	3 cut(s)	113, 315, 650
HinfI	GANTC	2 cut(s)	46, 730
HpaII	CCGG	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	3 cut(s)	171, 486, 603
Hpy188III	TCNNGA	1 cut(s)	659
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	148, 294
HpyCH4V	TGCA	4 cut(s)	473, 550, 593, 687
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 441, 509, 581, 590, 623, 707, 770
HpyF3I	CTNAG	2 cut(s)	365, 492
Hsp92II	CATG	2 cut(s)	473, 554
Kzo9I	GATC	3 cut(s)	102, 349, 553
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	3 cut(s)	490, 534, 785
LweI	GCATC	2 cut(s)	369, 625
MaeI	CTAG	2 cut(s)	93, 522
MaeIII	GTNAC	4 cut(s)	64, 266, 296, 436
MalI	GATC	3 cut(s)	104, 351, 555
MboI	GATC	3 cut(s)	102, 349, 553
MboII	GAAGA	4 cut(s)	168, 195, 569, 739
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	9 cut(s)	76, 137, 305, 354, 525, 567, 587, 628, 788
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	8 cut(s)	48, 124, 151, 493, 565, 616, 661, 788
MseI	TTAA	3 cut(s)	384, 558, 768
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	219, 677
Mva1269I	GAATGC	2 cut(s)	255, 437
MvaI	CCWGG	2 cut(s)	219, 677
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	8 cut(s)	131, 441, 509, 581, 590, 623, 707, 770
NdeII	GATC	3 cut(s)	102, 349, 553
NlaIII	CATG	2 cut(s)	473, 554
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	582
PctI	GAATGC	2 cut(s)	255, 437
PfeI	GAWTC	2 cut(s)	46, 730
PkrI	GCNGC	3 cut(s)	505, 549, 775
PpuMI	RGGWCCY	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	2 cut(s)	217, 675
PspGI	CCWGG	2 cut(s)	217, 675
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	361, 460
PspPPI	RGGWCCY	1 cut(s)	460
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	384, 558, 768
SatI	GCNGC	3 cut(s)	504, 548, 774
Sau3AI	GATC	3 cut(s)	102, 349, 553
Sau96I	GGNCC	2 cut(s)	361, 460
ScrFI	CCNGG	2 cut(s)	219, 677
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	2 cut(s)	369, 625
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	361, 460
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	9 cut(s)	76, 137, 305, 354, 525, 567, 587, 628, 788
SsiI	CCGC	4 cut(s)	100, 183, 407, 743
SspMI	CTAG	2 cut(s)	93, 522
StyD4I	CCNGG	2 cut(s)	217, 675
TaaI	ACNGT	2 cut(s)	148, 294
TaqI	TCGA	1 cut(s)	321
TasI	AATT	9 cut(s)	76, 137, 305, 354, 525, 567, 587, 628, 788
TfiI	GAWTC	2 cut(s)	46, 730
Tru1I	TTAA	3 cut(s)	384, 558, 768
Tru9I	TTAA	3 cut(s)	384, 558, 768
TscAI	CASTG	2 cut(s)	214, 299
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	3 cut(s)	503, 547, 773
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	444, 644, 740
TspRI	CASTG	2 cut(s)	214, 299
VpaK11BI	GGWCC	2 cut(s)	361, 460
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	2 cut(s)	93, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.