AT1G19000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003904
Physical Location & Seq
Reverse (-)
6560491 .. 6562791
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19000.1

Sequence Viewer

Length: 858 bp
ATGGCCGCCGTTAGTAGTTCGTCGGAGACCGGAGACTGCGGCGTTACGGGAAAGAGAGATGAGATCATGTTGTTCGGAGTTAGAGTCGTGGTTGATCCGATGAGAAAGTGTGTGAGTTTGAACAATCTCTCTGATTATGAAAAGTCTTCTCCGGAGGATGAGATCCCTAAGATAGTCACCGCCGGAGCTGGAGATGGTGAAGATAAGAACGAAACGGATGCGACGGTGATTGTCGCTGACGGTTACGCCTCCGCCAATGACGCTGTCCAGATTTCGTCTTCTTCCGGCGGGAGGAAACGAGGGGTTCCATGGACAGAGAACGAGCATAAGAGGTTCTTGATTGGGTTGCAGAAAGTAGGAAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTGAAGAGTAGGACTCCTACTCAAGTAGCTAGTCATGCTCAGAAATACTTCCTCCGACGAACCAACCTCAACCGTCGCCGAAGAAGATCTAGCCTTTTTGATATCACTACTGAGACGGTTACAGAAATGGCCATGGAGCAAGATCCTACTCAGGAGAACTCACCACTACCTGAAACCAACATCAGCTCTGGACAGCAAGCGATGCAAGTTTTTACTGACGTGCCGACAAAAACTGAGAATGCACCAGAGACATTTCATCTCAACGATCCATATCTGGTTCCAGTAACCTTCCAAGCAAAGCCAACATTCAATCTAAACACAGATGCTGCTCCACTTTCTCTCAACCTTTGTCTGGCATCCTCATTTAATCTTAACGAGCAACCCAACTCAAGACACTCGGCTTTCACGATGATGCCAAGCTTCAGCGATGGAGATAGCAATAGCAGCATCATCAGAGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

285

Amino Acids

31.23

Weight (kDa)

5.68

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 102 - 148 1.6e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 5 cut(s) 6, 39, 180, 252, 288
AclWI GGATC 4 cut(s) 89, 157, 530, 653
AcoI YGGCCR 2 cut(s) 3, 522
AcuI CTGAAG 1 cut(s) 799
AfiI CCNNNNNNNGG 2 cut(s) 291, 745
AgsI TTSAA 2 cut(s) 121, 703
AjiI CACGTC 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AluBI AGCT 4 cut(s) 188, 422, 579, 813
AluI AGCT 4 cut(s) 188, 422, 579, 813
Alw26I GTCTC 4 cut(s) 20, 27, 500, 635
AlwI GGATC 4 cut(s) 89, 157, 530, 653
AlwNI CAGNNNCTG 1 cut(s) 719
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 2 cut(s) 3, 522
ApeKI GCWGC 2 cut(s) 719, 837
Asp700I GAANNNNTTC 1 cut(s) 440
AsuHPI GGTGA 4 cut(s) 169, 209, 238, 546
BalI TGGCCA 1 cut(s) 524
BbsI GAAGAC 2 cut(s) 138, 270
BbvI GCAGC 2 cut(s) 706, 849
BccI CCATC 2 cut(s) 188, 815
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcoDI GTCTC 4 cut(s) 20, 27, 500, 635
BfaI CTAG 2 cut(s) 423, 483
BglII AGATCT 1 cut(s) 479
BisI GCNGC 4 cut(s) 6, 40, 720, 838
BlsI GCNGC 4 cut(s) 7, 41, 721, 839
BmgBI CACGTC 1 cut(s) 613
BmiI GGNNCC 2 cut(s) 306, 672
BmsI GCATC 6 cut(s) 208, 585, 706, 758, 795, 849
BpiI GAAGAC 2 cut(s) 138, 270
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 2 cut(s) 399, 766
BsaBI GATNNNNATC 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 308, 525
BsaWI WCCGGW 2 cut(s) 29, 151
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 745
Bse1I ACTGG 1 cut(s) 674
Bse8I GATNNNNATC 1 cut(s) 663
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 308, 525
BseGI GGATG 3 cut(s) 163, 223, 749
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 291, 745
BseMII CTCAG 4 cut(s) 446, 495, 557, 618
BseNI ACTGG 1 cut(s) 674
BseXI GCAGC 2 cut(s) 706, 849
BshFI GGCC 2 cut(s) 5, 524
BsiSI CCGG 4 cut(s) 30, 152, 183, 285
BslI CCNNNNNNNGG 2 cut(s) 291, 745
BsmAI GTCTC 4 cut(s) 20, 27, 500, 635
BsmBI CGTCTC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 2 cut(s) 5, 524
Bso31I GGTCTC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 6 cut(s) 63, 94, 162, 479, 535, 658
Bsp19I CCATGG 2 cut(s) 308, 525
BspACI CCGC 5 cut(s) 6, 39, 180, 252, 288
BspANI GGCC 2 cut(s) 5, 524
BspCNI CTCAG 4 cut(s) 445, 496, 556, 619
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 306, 672
BspPI GGATC 4 cut(s) 89, 157, 530, 653
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 674
BssECI CCNNGG 2 cut(s) 308, 525
BssMI GATC 6 cut(s) 63, 94, 162, 479, 535, 658
BssT1I CCWWGG 2 cut(s) 308, 525
Bst4CI ACNGT 4 cut(s) 226, 242, 467, 511
Bst6I CTCTTC 1 cut(s) 392
BstAPI GCANNNNNTGC 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 6 cut(s) 168, 432, 504, 543, 627, 855
BstDSI CCRYGG 2 cut(s) 308, 525
BstF5I GGATG 3 cut(s) 163, 223, 749
BstKTI GATC 6 cut(s) 66, 97, 165, 482, 538, 661
BstMAI GTCTC 4 cut(s) 20, 27, 500, 635
BstMBI GATC 6 cut(s) 63, 94, 162, 479, 535, 658
BstMWI GCNNNNNNNGC 4 cut(s) 260, 428, 595, 837
BstV1I GCAGC 2 cut(s) 706, 849
BstV2I GAAGAC 2 cut(s) 138, 270
BstX2I RGATCY 3 cut(s) 162, 479, 535
BstYI RGATCY 3 cut(s) 162, 479, 535
BsuRI GGCC 2 cut(s) 5, 524
BtgI CCRYGG 2 cut(s) 308, 525
BtgZI GCGATG 2 cut(s) 608, 834
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 3 cut(s) 163, 223, 749
Cac8I GCNNGC 1 cut(s) 591
CaiI CAGNNNCTG 1 cut(s) 719
CseI GACGC 1 cut(s) 269
CviAII CATG 4 cut(s) 67, 309, 428, 526
CviJI RGCY 9 cut(s) 5, 188, 422, 486, 524, 579, 694, 794, 813
CviKI_1 RGCY 9 cut(s) 5, 188, 422, 486, 524, 579, 694, 794, 813
DdeI CTNAG 6 cut(s) 168, 432, 504, 543, 627, 855
DpnI GATC 6 cut(s) 65, 96, 164, 481, 537, 660
DpnII GATC 6 cut(s) 63, 94, 162, 479, 535, 658
EaeI YGGCCR 2 cut(s) 3, 522
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
EciI GGCGGA 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 308, 525
Eco31I GGTCTC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 799
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 308, 525
ErhI CCWWGG 2 cut(s) 308, 525
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 4 cut(s) 70, 312, 431, 529
FaiI YATR 7 cut(s) 68, 138, 310, 327, 429, 527, 664
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 4 cut(s) 66, 308, 427, 525
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 4 cut(s) 6, 40, 720, 838
FokI GGATG 3 cut(s) 170, 230, 736
Fsp4HI GCNGC 4 cut(s) 6, 40, 720, 838
FspBI CTAG 2 cut(s) 423, 483
GluI GCNGC 4 cut(s) 6, 40, 720, 838
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 5, 524
HapII CCGG 4 cut(s) 30, 152, 183, 285
HgaI GACGC 1 cut(s) 269
Hin1II CATG 4 cut(s) 70, 312, 431, 529
HindIII AAGCTT 1 cut(s) 811
HinfI GANTC 2 cut(s) 84, 406
HpaII CCGG 4 cut(s) 30, 152, 183, 285
HphI GGTGA 4 cut(s) 169, 209, 238, 546
Hpy188I TCNGA 7 cut(s) 25, 77, 99, 133, 435, 449, 848
Hpy188III TCNNGA 8 cut(s) 152, 268, 337, 384, 545, 582, 783, 799
Hpy99I CGWCG 4 cut(s) 25, 226, 453, 471
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 4 cut(s) 226, 242, 467, 511
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 3 cut(s) 349, 598, 635
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 428, 595, 837
HpyF3I CTNAG 6 cut(s) 168, 432, 504, 543, 627, 855
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 4 cut(s) 70, 312, 431, 529
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 6 cut(s) 63, 94, 162, 479, 535, 658
LmnI GCTCC 3 cut(s) 185, 529, 727
Lsp1109I GCAGC 2 cut(s) 706, 849
LweI GCATC 6 cut(s) 208, 585, 706, 758, 795, 849
MaeI CTAG 2 cut(s) 423, 483
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 5 cut(s) 43, 175, 242, 511, 676
MalI GATC 6 cut(s) 65, 96, 164, 481, 537, 660
MboI GATC 6 cut(s) 63, 94, 162, 479, 535, 658
MboII GAAGA 7 cut(s) 138, 212, 270, 273, 409, 486, 489
MflI RGATCY 3 cut(s) 162, 479, 535
MlsI TGGCCA 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 2 cut(s) 93, 400
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 8 cut(s) 148, 259, 285, 293, 324, 455, 470, 763
Mox20I TGGCCA 1 cut(s) 524
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 440
MscI TGGCCA 1 cut(s) 524
MseI TTAA 2 cut(s) 759, 765
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 524
MspI CCGG 4 cut(s) 30, 152, 183, 285
Mva1269I GAATGC 1 cut(s) 637
MwoI GCNNNNNNNGC 4 cut(s) 260, 428, 595, 837
NcoI CCATGG 2 cut(s) 308, 525
NdeII GATC 6 cut(s) 63, 94, 162, 479, 535, 658
NlaIII CATG 4 cut(s) 70, 312, 431, 529
NlaIV GGNNCC 2 cut(s) 306, 672
NmeAIII GCCGAG 1 cut(s) 770
NmuCI GTSAC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 440
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 7, 41, 721, 839
PleI GAGTC 2 cut(s) 92, 400
PpsI GAGTC 2 cut(s) 92, 400
PspN4I GGNNCC 2 cut(s) 306, 672
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 3 cut(s) 162, 479, 535
PsyI GACNNNGTC 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 803
SaqAI TTAA 2 cut(s) 759, 765
SatI GCNGC 4 cut(s) 6, 40, 720, 838
Sau3AI GATC 6 cut(s) 63, 94, 162, 479, 535, 658
SchI GAGTC 2 cut(s) 93, 400
SfaNI GCATC 6 cut(s) 208, 585, 706, 758, 795, 849
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 2 cut(s) 414, 781
SmoI CTYRAG 2 cut(s) 414, 781
SsiI CCGC 5 cut(s) 6, 39, 180, 252, 288
SspMI CTAG 2 cut(s) 423, 483
StyI CCWWGG 2 cut(s) 308, 525
TaaI ACNGT 4 cut(s) 226, 242, 467, 511
TaiI ACGT 1 cut(s) 615
TauI GCSGC 2 cut(s) 8, 42
Tru1I TTAA 2 cut(s) 759, 765
Tru9I TTAA 2 cut(s) 759, 765
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 719, 837
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 153, 638
TspGWI ACGGA 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 2 cut(s) 423, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.