Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003965.1

Orthogroup ID

OG0003904

Physical Location & Seq

Genomic Coordinates Forward (+)

9304 .. 13081

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003965.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgttcgccactccagaatcctatggtctttatgtaatgcttgaggctgaatccaagtcggcgaatttgtttcttgaacttgtagaagagtgggaagagaaatgctgggcatttgaggaagacaaggactatctcattgaaaagcgttgcagcacaaagaagctggtcgtttcctgtagcgccatatccactatgtgcagtgcaaccattgctcgcggcacatatttcatgtctttagaaaatcggaaagagaaacagaaaaagaaagactacggatcctcctctcctaatccggactctcctcccagctacgacccaccgcttcacgtccgcgacggtgacctgtctgacgacccggcccatgcctcctcctcctccgccaatcgccgtggagatcgtcaaaaaagagtgatcccatgggcagaagaggagcatcgaatgttcttaattggtcttgagaaattggggaaaggagactggcgtggaatagcgcgaaattataggcatcagaacttaaaggccgagagggttccttcctcggcctacaatcatttgaaagaagtcagatcacgccccattcaaatcagaaacctcgcttggccattcggctgcgagttggcacgcccgcgcgatttcagaaggacgattcaaccacaagtccctcggctctcatttcggccgagacgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

230

Amino Acids

26.7

Weight (kDa)

9.26

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19000 AT1G19000 AT1G74840 AT1G74840
fragaria_vesca	FvH4_2g31190 FvH4_5g16170 FvH4_5g16170
malus_domestica	MD01G1036800.v1.1 MD06G1183300.v1.1 MD14G1189300.v1.1
prunus_persica	Prupe.1G413400_v2.0.a1 Prupe.5G182000_v2.0.a1
pyrus_communis	pycom06g16230 pycom14g15700
rosa_chinensis	RchiOBHm_Chr7g0179981
rosa_laevigata	RLG00000005305 RLG00000015426
rosa_multiflora	Rmu_co8001466.1_g000001 Rmu_co8001468.1_g000001 Rmu_sc0003965.1_g000004 Rmu_ssc0000119.1_g000011
rosa_roxburghii	Rroxscaffold_3G00273260 Rroxscaffold_7G00211840 Rroxscaffold_7G00216350
rosa_rugosa	Rorug06G0429500
rosa_samantha	Rh6AG015400 Rh6BG013600 Rh6CG010700 Rh6DG011900 Rh7AG030000 Rh7BG029300 Rh7CG031000 Rh7DG030300
rosa_wichuraiana	Rw7G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	216, 333, 493, 628, 630
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	5 cut(s)	216, 320, 331, 378, 626
AclWI	GGATC	3 cut(s)	270, 283, 406
AcoI	YGGCCR	2 cut(s)	599, 677
AcsI	RAATTY	1 cut(s)	64
AdeI	CACNNNGTG	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	77, 140, 556, 581, 650
AjiI	CACGTC	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	2 cut(s)	163, 309
AluI	AGCT	2 cut(s)	163, 309
Alw26I	GTCTC	2 cut(s)	468, 676
AlwI	GGATC	3 cut(s)	270, 283, 406
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	5 cut(s)	357, 519, 540, 599, 677
ApeKI	GCWGC	2 cut(s)	150, 609
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	3 cut(s)	182, 493, 630
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	601
BamHI	GGATCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	162, 596
BceAI	ACGGC	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	468, 676
BfmI	CTRYAG	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	3 cut(s)	151, 217, 610
BlsI	GCNGC	3 cut(s)	152, 218, 611
Bme1390I	CCNGG	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	277, 531
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	442, 514
BpiI	GAAGAC	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	62, 476
BpuMI	CCSGG	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	388, 416, 537, 662
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	292
BseDI	CCNNGG	4 cut(s)	388, 416, 537, 662
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	6 cut(s)	271, 291, 358, 361, 364, 443
BseX3I	CGGCCG	1 cut(s)	677
BseXI	GCAGC	2 cut(s)	162, 596
BseYI	CCCAGC	2 cut(s)	105, 305
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	5 cut(s)	216, 333, 493, 628, 630
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	5 cut(s)	359, 521, 542, 601, 679
BsiEI	CGRYCG	1 cut(s)	680
BsiSI	CCGG	2 cut(s)	293, 356
BslFI	GGGAC	1 cut(s)	644
BsmAI	GTCTC	2 cut(s)	468, 676
BsmBI	CGTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	5 cut(s)	359, 521, 542, 601, 679
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	275, 394, 411, 566
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	5 cut(s)	216, 320, 331, 378, 626
BspANI	GGCC	5 cut(s)	359, 521, 542, 601, 679
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	5 cut(s)	216, 333, 493, 628, 630
BspLI	GGNNCC	2 cut(s)	277, 531
BspPI	GGATC	3 cut(s)	270, 283, 406
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	4 cut(s)	388, 416, 537, 662
BssMI	GATC	4 cut(s)	275, 394, 411, 566
BssT1I	CCWWGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	3 cut(s)	81, 90, 420
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	214, 622, 626
BstDSI	CCRYGG	2 cut(s)	388, 416
BstEII	GGTNACC	1 cut(s)	338
BstFNI	CGCG	5 cut(s)	216, 333, 493, 628, 630
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	3 cut(s)	182, 493, 630
BstKTI	GATC	4 cut(s)	278, 397, 414, 569
BstMAI	GTCTC	2 cut(s)	468, 676
BstMBI	GATC	4 cut(s)	275, 394, 411, 566
BstMCI	CGRYCG	1 cut(s)	680
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	5 cut(s)	216, 333, 493, 628, 630
BstV1I	GCAGC	2 cut(s)	162, 596
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BstZI	CGGCCG	1 cut(s)	677
BsuRI	GGCC	5 cut(s)	359, 521, 542, 601, 679
BtgI	CCRYGG	2 cut(s)	388, 416
BtrI	CACGTC	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	3 cut(s)	214, 622, 626
CfoI	GCGC	3 cut(s)	182, 493, 630
Cfr13I	GGNCC	1 cut(s)	358
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	3 cut(s)	229, 362, 417
DpnI	GATC	4 cut(s)	277, 396, 413, 568
DpnII	GATC	4 cut(s)	275, 394, 411, 566
DraIII	CACNNNGTG	1 cut(s)	195
EaeI	YGGCCR	2 cut(s)	599, 677
EagI	CGGCCG	1 cut(s)	677
Eam1104I	CTCTTC	3 cut(s)	81, 90, 420
EarI	CTCTTC	3 cut(s)	81, 90, 420
EciI	GGCGGA	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	416
Eco52I	CGGCCG	1 cut(s)	677
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	676
FaeI	CATG	3 cut(s)	232, 365, 420
FaiI	YATR	9 cut(s)	24, 33, 185, 194, 223, 230, 363, 418, 501
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	3 cut(s)	228, 361, 416
FauI	CCCGC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	151, 217, 610
Fsp4HI	GCNGC	3 cut(s)	151, 217, 610
GlaI	GCGC	3 cut(s)	181, 492, 629
GluI	GCNGC	3 cut(s)	151, 217, 610
GsaI	CCCAGC	2 cut(s)	109, 309
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	359, 521, 542, 601, 679
HapII	CCGG	2 cut(s)	293, 356
HhaI	GCGC	3 cut(s)	182, 493, 630
Hin1II	CATG	3 cut(s)	232, 365, 420
Hin6I	GCGC	3 cut(s)	180, 491, 628
HinP1I	GCGC	3 cut(s)	180, 491, 628
HinfI	GANTC	4 cut(s)	17, 50, 296, 646
HpaII	CCGG	2 cut(s)	293, 356
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	6 cut(s)	246, 349, 510, 566, 587, 638
Hpy188III	TCNNGA	4 cut(s)	14, 74, 293, 455
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	543, 633
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	150, 198, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	232, 365, 420
HspAI	GCGC	3 cut(s)	180, 491, 628
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	275, 394, 411, 566
LmnI	GCTCC	1 cut(s)	430
LpnPI	CCDG	9 cut(s)	27, 91, 149, 187, 306, 319, 356, 369, 463
Lsp1109I	GCAGC	2 cut(s)	162, 596
LweI	GCATC	2 cut(s)	442, 514
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	277, 396, 413, 568
MboI	GATC	4 cut(s)	275, 394, 411, 566
MboII	GAAGA	4 cut(s)	98, 107, 131, 437
MflI	RGATCY	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	601
MluCI	AATT	4 cut(s)	64, 447, 461, 496
MluNI	TGGCCA	1 cut(s)	601
MlyI	GAGTC	1 cut(s)	290
Mox20I	TGGCCA	1 cut(s)	601
MroI	TCCGGA	1 cut(s)	292
MscI	TGGCCA	1 cut(s)	601
MseI	TTAA	2 cut(s)	446, 515
Msp20I	TGGCCA	1 cut(s)	601
MspI	CCGG	2 cut(s)	293, 356
MspR9I	CCNGG	1 cut(s)	356
MvnI	CGCG	5 cut(s)	216, 333, 493, 628, 630
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	4 cut(s)	275, 394, 411, 566
NlaIII	CATG	3 cut(s)	232, 365, 420
NlaIV	GGNNCC	2 cut(s)	277, 531
NmeAIII	GCCGAG	3 cut(s)	518, 547, 643
NmuCI	GTSAC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PfeI	GAWTC	3 cut(s)	17, 50, 646
PkrI	GCNGC	3 cut(s)	152, 218, 611
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	2 cut(s)	105, 305
PspN4I	GGNNCC	2 cut(s)	277, 531
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	446, 515
SatI	GCNGC	3 cut(s)	151, 217, 610
Sau3AI	GATC	4 cut(s)	275, 394, 411, 566
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	5 cut(s)	165, 311, 330, 345, 594
SfaNI	GCATC	2 cut(s)	442, 514
SfcI	CTRYAG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	41, 455
SmoI	CTYRAG	2 cut(s)	41, 455
Sse9I	AATT	4 cut(s)	64, 447, 461, 496
SsiI	CCGC	5 cut(s)	216, 320, 331, 378, 626
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	436
TasI	AATT	4 cut(s)	64, 447, 461, 496
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	17, 50, 646
Tru1I	TTAA	2 cut(s)	446, 515
Tru9I	TTAA	2 cut(s)	446, 515
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	150, 609
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	217
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.