Rw7G002410
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003904
Physical Location & Seq
Forward (+)
1960826 .. 1962829
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002410.1

Sequence Viewer

Length: 921 bp
ATGTCCTCCGGCACTTGCTCCACCACCGTCGATCCCGCCGCCGGCGGGGCCAAAGAGTTCATGCTGTTCGGCGTGCGCGTGGTGGTTGACTCCATGAGGAAGAGCGTCAGTCTCAACAATCTCTCGCAGTACGAACACCCTACCGAGGCCTCCAACAACAACAATAACAGCTCCGGCGCCGGCGCCGGCGCCGGCAAGGACGACGCCGTCGCTGGTTACGTATCTGAGAACGACGTCGTTCACAATTCTGGCGGGAATCGCGAGCGCGAACGCAAGCGAGGAGTTCCGTGGACGGAGGATGAGCACAAGCTATTTCTGCTTGGATTGCAGAAAGTAGGGAAAGGAGATTGGAGAGGGATCTCAAGGAACTATGTCAAGACTCGCACGCCGACTCAGGTGGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGGAGCAACCACAATCGCCGCCGCCGCAGATCTAGCCTATTTGATATCACCACCGATTCGGTCCCTGCAACTCCAATGGAAGAAGAGCAAGTACATCATCAAGATAACACATCTCACCTGCACTCGTTGCCACCACCTCCACCACAATCCGAATCTTGCAATCCTAATGGATTTTCGATGGTGCCAATTTTTCCAATGAACGTAGGTCCAGCTGTTGTACAAGTCGCCACTAAGAAACCAACAGGAAATCTAAAACTGGGACAAGGAAATCCGGGGTGTCCTTCCCCTAAGATCGTCCATCCAGTTGCTCTGCACTCGGCCCCTCATGCTACAGAAGCATCTGATCTAAACTTGAATGCGACAATCGACACATCGCCTCTAGCTCTCAACCTCTCCTTGTCAATGAACTCGAGGGAATCATCGTCAAGGCATTCGGCTTTCCAAGCAATGTCAAGCTTCGGCAATGGGGACAACATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

306

Amino Acids

32.94

Weight (kDa)

8.99

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 95 - 141 5.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 555
AasI GACNNNNNNGTC 1 cut(s) 206
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 555
AccB1I GGYRCC 4 cut(s) 176, 182, 188, 610
AccII CGCG 3 cut(s) 78, 261, 267
AciI CCGC 8 cut(s) 36, 39, 45, 252, 427, 448, 451, 454
AclWI GGATC 2 cut(s) 26, 365
AcyI GRCGYC 5 cut(s) 177, 183, 189, 204, 234
AfaI GTAC 4 cut(s) 131, 419, 522, 648
AfiI CCNNNNNNNGG 3 cut(s) 41, 45, 145
AgsI TTSAA 1 cut(s) 784
AluBI AGCT 5 cut(s) 171, 310, 641, 812, 885
AluI AGCT 5 cut(s) 171, 310, 641, 812, 885
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 26, 365
Ama87I CYCGRG 1 cut(s) 838
AoxI GGCC 3 cut(s) 48, 147, 747
AspLEI GCGC 5 cut(s) 78, 179, 185, 191, 267
AspS9I GGNCC 4 cut(s) 48, 490, 635, 748
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 2 cut(s) 469, 536
AsuNHI GCTAGC 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 838
AvaII GGWCC 2 cut(s) 490, 635
BanI GGYRCC 4 cut(s) 176, 182, 188, 610
BarI GAAGNNNNNNTAC 2 cut(s) 504, 536
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 2 cut(s) 601, 735
BceAI ACGGC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 702
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 3 cut(s) 402, 462, 809
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 3 cut(s) 180, 186, 192
BfuAI ACCTGC 1 cut(s) 555
BglI GCCNNNNNGGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 458
BisI GCNGC 4 cut(s) 39, 448, 451, 454
BlsI GCNGC 4 cut(s) 40, 449, 452, 455
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 2 cut(s) 490, 635
BmeT110I CYCGRG 1 cut(s) 838
BmgT120I GGNCC 4 cut(s) 48, 490, 635, 748
BmiI GGNNCC 7 cut(s) 49, 178, 184, 190, 492, 612, 750
BmrFI CCNGG 1 cut(s) 702
BmrI ACTGGG 1 cut(s) 695
BmsI GCATC 1 cut(s) 776
BmtI GCTAGC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 702
BsaAI YACGTR 1 cut(s) 220
BsaHI GRCGYC 5 cut(s) 177, 183, 189, 204, 234
BsaJI CCNNGG 3 cut(s) 144, 287, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 45, 145
Bse118I RCCGGY 4 cut(s) 41, 179, 185, 191
Bse1I ACTGG 2 cut(s) 690, 731
Bse3DI GCAATG 2 cut(s) 882, 898
BseDI CCNNGG 3 cut(s) 144, 287, 701
BseGI GGATG 2 cut(s) 304, 727
BseLI CCNNNNNNNGG 3 cut(s) 41, 45, 145
BseMI GCAATG 2 cut(s) 882, 898
BseMII CTCAG 3 cut(s) 216, 407, 425
BseNI ACTGG 2 cut(s) 690, 731
BseRI GAGGAG 1 cut(s) 294
BsgI GTGCAG 2 cut(s) 533, 725
Bsh1236I CGCG 3 cut(s) 78, 261, 267
BshFI GGCC 3 cut(s) 50, 149, 749
BshNI GGYRCC 4 cut(s) 176, 182, 188, 610
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 838
BsiSI CCGG 8 cut(s) 9, 42, 174, 180, 186, 192, 430, 701
BslFI GGGAC 3 cut(s) 476, 702, 911
BslI CCNNNNNNNGG 3 cut(s) 41, 45, 145
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 3 cut(s) 476, 702, 911
BsmI GAATGC 2 cut(s) 790, 859
BsnI GGCC 3 cut(s) 50, 149, 749
BsoBI CYCGRG 1 cut(s) 838
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 31, 357, 458, 720, 772
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 8 cut(s) 36, 39, 45, 252, 427, 448, 451, 454
BspANI GGCC 3 cut(s) 50, 149, 749
BspCNI CTCAG 3 cut(s) 217, 406, 424
BspFNI CGCG 3 cut(s) 78, 261, 267
BspLI GGNNCC 7 cut(s) 49, 178, 184, 190, 492, 612, 750
BspMI ACCTGC 1 cut(s) 555
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 26, 365
BspQI GCTCTTC 2 cut(s) 95, 507
BspT107I GGYRCC 4 cut(s) 176, 182, 188, 610
BsrDI GCAATG 2 cut(s) 882, 898
BsrFI RCCGGY 4 cut(s) 41, 179, 185, 191
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 2 cut(s) 690, 731
BssAI RCCGGY 4 cut(s) 41, 179, 185, 191
BssECI CCNNGG 3 cut(s) 144, 287, 701
BssMI GATC 5 cut(s) 31, 357, 458, 720, 772
BssNI GRCGYC 5 cut(s) 177, 183, 189, 204, 234
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 95, 507
BstACI GRCGYC 5 cut(s) 177, 183, 189, 204, 234
BstAPI GCANNNNNTGC 1 cut(s) 556
BstAUI TGTACA 1 cut(s) 646
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 9 cut(s) 43, 74, 181, 187, 193, 263, 275, 386, 403
BstDEI CTNAG 5 cut(s) 225, 393, 411, 660, 717
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 304, 727
BstFNI CGCG 3 cut(s) 78, 261, 267
BstH2I RGCGCY 3 cut(s) 180, 186, 192
BstHHI GCGC 5 cut(s) 78, 179, 185, 191, 267
BstKTI GATC 5 cut(s) 34, 360, 461, 723, 775
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 5 cut(s) 31, 357, 458, 720, 772
BstSCI CCNGG 1 cut(s) 700
BstSFI CTRYAG 1 cut(s) 759
BstSNI TACGTA 1 cut(s) 220
BstUI CGCG 3 cut(s) 78, 261, 267
BstX2I RGATCY 2 cut(s) 357, 458
BstYI RGATCY 2 cut(s) 357, 458
BsuRI GGCC 3 cut(s) 50, 149, 749
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 786
BtsCI GGATG 2 cut(s) 304, 727
BtsIMutI CAGTG 1 cut(s) 916
BtuMI TCGCGA 1 cut(s) 261
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 9 cut(s) 43, 74, 181, 187, 193, 263, 275, 386, 403
CfoI GCGC 5 cut(s) 78, 179, 185, 191, 267
Cfr10I RCCGGY 4 cut(s) 41, 179, 185, 191
Cfr13I GGNCC 4 cut(s) 48, 490, 635, 748
CseI GACGC 2 cut(s) 94, 212
Csp6I GTAC 4 cut(s) 130, 418, 521, 647
CviAII CATG 4 cut(s) 61, 94, 407, 755
CviQI GTAC 4 cut(s) 130, 418, 521, 647
DdeI CTNAG 5 cut(s) 225, 393, 411, 660, 717
DinI GGCGCC 3 cut(s) 178, 184, 190
DpnI GATC 5 cut(s) 33, 359, 460, 722, 774
DpnII GATC 5 cut(s) 31, 357, 458, 720, 772
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
Eam1104I CTCTTC 2 cut(s) 95, 507
EarI CTCTTC 2 cut(s) 95, 507
EciI GGCGGA 1 cut(s) 416
Eco105I TACGTA 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 149
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 2 cut(s) 490, 635
Eco88I CYCGRG 1 cut(s) 838
EcoRV GATATC 1 cut(s) 475
EgeI GGCGCC 3 cut(s) 178, 184, 190
EheI GGCGCC 3 cut(s) 178, 184, 190
FaeI CATG 4 cut(s) 64, 97, 410, 758
FaiI YATR 5 cut(s) 62, 95, 372, 408, 756
FaqI GGGAC 3 cut(s) 476, 702, 911
FatI CATG 4 cut(s) 60, 93, 406, 754
FauI CCCGC 3 cut(s) 38, 43, 245
Fnu4HI GCNGC 4 cut(s) 39, 448, 451, 454
FokI GGATG 2 cut(s) 311, 714
Fsp4HI GCNGC 4 cut(s) 39, 448, 451, 454
FspBI CTAG 3 cut(s) 402, 462, 809
GlaI GCGC 5 cut(s) 77, 178, 184, 190, 266
GluI GCNGC 4 cut(s) 39, 448, 451, 454
HaeII RGCGCY 3 cut(s) 180, 186, 192
HaeIII GGCC 3 cut(s) 50, 149, 749
HapII CCGG 8 cut(s) 9, 42, 174, 180, 186, 192, 430, 701
HgaI GACGC 2 cut(s) 94, 212
HhaI GCGC 5 cut(s) 78, 179, 185, 191, 267
Hin1I GRCGYC 5 cut(s) 177, 183, 189, 204, 234
Hin1II CATG 4 cut(s) 64, 97, 410, 758
Hin6I GCGC 5 cut(s) 76, 177, 183, 189, 265
HinP1I GCGC 5 cut(s) 76, 177, 183, 189, 265
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 7 cut(s) 89, 256, 379, 391, 485, 581, 845
HpaII CCGG 8 cut(s) 9, 42, 174, 180, 186, 192, 430, 701
HphI GGTGA 2 cut(s) 469, 536
Hpy166II GTNNAC 3 cut(s) 88, 241, 291
Hpy188I TCNGA 4 cut(s) 226, 414, 580, 772
Hpy188III TCNNGA 3 cut(s) 260, 376, 530
Hpy8I GTNNAC 3 cut(s) 88, 241, 291
Hpy99I CGWCG 5 cut(s) 32, 206, 212, 236, 239
HpyAV CCTTC 1 cut(s) 720
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 3 cut(s) 219, 234, 630
HpyCH4V TGCA 5 cut(s) 328, 497, 550, 588, 742
HpyF3I CTNAG 5 cut(s) 225, 393, 411, 660, 717
HpySE526I ACGT 3 cut(s) 219, 234, 630
Hsp92I GRCGYC 5 cut(s) 177, 183, 189, 204, 234
Hsp92II CATG 4 cut(s) 64, 97, 410, 758
HspAI GCGC 5 cut(s) 76, 177, 183, 189, 265
KasI GGCGCC 3 cut(s) 176, 182, 188
KroI GCCGGC 4 cut(s) 41, 179, 185, 191
KroNI GCCGGC 4 cut(s) 43, 181, 187, 193
Kzo9I GATC 5 cut(s) 31, 357, 458, 720, 772
LguI GCTCTTC 2 cut(s) 95, 507
LmnI GCTCC 3 cut(s) 23, 176, 432
LweI GCATC 1 cut(s) 776
MaeI CTAG 3 cut(s) 402, 462, 809
MaeII ACGT 3 cut(s) 219, 234, 630
MaeIII GTNAC 1 cut(s) 215
MalI GATC 5 cut(s) 33, 359, 460, 722, 774
MboI GATC 5 cut(s) 31, 357, 458, 720, 772
MboII GAAGA 3 cut(s) 112, 521, 524
MflI RGATCY 2 cut(s) 357, 458
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 2 cut(s) 244, 615
Mly113I GGCGCC 3 cut(s) 177, 183, 189
MlyI GAGTC 3 cut(s) 83, 373, 385
MmeI TCCRAC 1 cut(s) 177
MreI CGCCGGCG 3 cut(s) 41, 179, 185
MroNI GCCGGC 4 cut(s) 41, 179, 185, 191
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 8 cut(s) 9, 42, 174, 180, 186, 192, 430, 701
MspR9I CCNGG 1 cut(s) 702
Mva1269I GAATGC 2 cut(s) 790, 859
MvnI CGCG 3 cut(s) 78, 261, 267
NaeI GCCGGC 4 cut(s) 43, 181, 187, 193
NarI GGCGCC 3 cut(s) 177, 183, 189
NciI CCSGG 1 cut(s) 702
NdeII GATC 5 cut(s) 31, 357, 458, 720, 772
NgoMIV GCCGGC 4 cut(s) 41, 179, 185, 191
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 4 cut(s) 64, 97, 410, 758
NlaIV GGNNCC 7 cut(s) 49, 178, 184, 190, 492, 612, 750
NmeAIII GCCGAG 1 cut(s) 725
NruI TCGCGA 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 555
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 2 cut(s) 95, 507
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 216
PctI GAATGC 2 cut(s) 790, 859
PdiI GCCGGC 4 cut(s) 43, 181, 187, 193
PfeI GAWTC 4 cut(s) 256, 485, 581, 845
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 4 cut(s) 40, 449, 452, 455
PleI GAGTC 3 cut(s) 83, 373, 385
PluTI GGCGCC 3 cut(s) 180, 186, 192
PpsI GAGTC 3 cut(s) 83, 373, 385
Ppu21I YACGTR 1 cut(s) 220
PspN4I GGNNCC 7 cut(s) 49, 178, 184, 190, 492, 612, 750
PspPI GGNCC 4 cut(s) 48, 490, 635, 748
PspXI VCTCGAGB 1 cut(s) 838
PsuI RGATCY 2 cut(s) 357, 458
PsyI GACNNNGTC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 641
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 4 cut(s) 131, 419, 522, 648
RsaNI GTAC 4 cut(s) 130, 418, 521, 647
SapI GCTCTTC 2 cut(s) 95, 507
SatI GCNGC 4 cut(s) 39, 448, 451, 454
Sau3AI GATC 5 cut(s) 31, 357, 458, 720, 772
Sau96I GGNCC 4 cut(s) 48, 490, 635, 748
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 3 cut(s) 83, 373, 385
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 1 cut(s) 776
SfcI CTRYAG 1 cut(s) 759
SfoI GGCGCC 3 cut(s) 178, 184, 190
Sfr274I CTCGAG 1 cut(s) 838
SgrAI CRCCGGYG 3 cut(s) 41, 179, 185
SinI GGWCC 2 cut(s) 490, 635
SlaI CTCGAG 1 cut(s) 838
SmlI CTYRAG 2 cut(s) 361, 838
SmoI CTYRAG 2 cut(s) 361, 838
SnaBI TACGTA 1 cut(s) 220
Sse9I AATT 2 cut(s) 244, 615
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 8 cut(s) 36, 39, 45, 252, 427, 448, 451, 454
SspDI GGCGCC 3 cut(s) 176, 182, 188
SspMI CTAG 3 cut(s) 402, 462, 809
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 700
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 3 cut(s) 222, 237, 633
TaqI TCGA 4 cut(s) 30, 605, 795, 839
TaqII GACCGA 1 cut(s) 478
TasI AATT 2 cut(s) 244, 615
TatI WGTACW 3 cut(s) 417, 520, 646
TauI GCSGC 4 cut(s) 41, 450, 453, 456
TfiI GAWTC 4 cut(s) 256, 485, 581, 845
TscAI CASTG 1 cut(s) 916
TspDTI ATGAA 3 cut(s) 49, 641, 848
TspGWI ACGGA 2 cut(s) 276, 308
TspRI CASTG 1 cut(s) 916
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 490, 635
XhoI CTCGAG 1 cut(s) 838
XspI CTAG 3 cut(s) 402, 462, 809
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.