Rh6BG013600
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003904
Physical Location & Seq
Forward (+)
1953579 .. 1954535
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG013600.1

Sequence Viewer

Length: 789 bp
ATGGCAGATCTTGAGAGTCAAAAGATTAGAAAGACCAAGATCAGCTTCAAACTCATCTTCTTAGATATTCTCCTCGTCATACTTGAGAGGCTTACAATGTGGCTTTTGTTAAGCTATCCCAGCTTTGTTCATTTTTTCTGTTCCACAGGCTTTACTCCGCTGAGATTACATATTTCAGTGTCGTACGGATATCTTACGGAGGATCTTACACCAGTGCAGGCGCTGGGAGAATATTATCTTTTATTGTTGATTGAACGATTTGTGAGCTTTGCTGCTATATACTTGTACTGGCCTACAAATTTTTGGTGTATAGTGGTCGTTTCCTGTAGCGCCATATCCACTATATGCAGTGCAACCATTGCTCGCGGCACATATTTCATGTCTTTAGAAAATCGGAAAGAGAAACAGAAAAAGAAAGACAACGGATCCTCCTCTCCTAATCCGGACTCTCCTCCCAGCTACGACCCACCGCTTCACGTCCGCGACGGTGACCTGTCTGACGACCCGGCCCATGCCTCCTCCTCCTCCGCCAATCGCCGTGGAGATCGTCAAAAAAGAGTGATCCCATGGGCAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTGAGAAATTGGGGAAAGGAGACTGGCGTGGGATAGCGCGAAATTATGTAAAGACTAGGACTCCTACTCAGGTGGCAAGCCATGCCCACAGGTATTTTACCCGGCAGAGTACTTCTAGCTCCAGTGATCCACCTCACATGCCAGAAGAACAAGCTTTGCTGTTGGGGTCATCTATGGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

262

Amino Acids

29.74

Weight (kDa)

8.81

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 189 - 233 2.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 366, 483, 643
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 5 cut(s) 158, 366, 470, 481, 528
AclWI GGATC 5 cut(s) 210, 420, 433, 556, 725
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 3 cut(s) 185, 287, 715
AgsI TTSAA 2 cut(s) 49, 254
AjiI CACGTC 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 7 cut(s) 45, 114, 123, 267, 459, 723, 758
AluI AGCT 7 cut(s) 45, 114, 123, 267, 459, 723, 758
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 5 cut(s) 210, 420, 433, 556, 725
AlwNI CAGNNNCTG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 2 cut(s) 290, 507
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 3 cut(s) 223, 332, 643
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 506, 706
AsuHPI GGTGA 1 cut(s) 500
BamHI GGATCC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 522
BcnI CCSGG 2 cut(s) 506, 706
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 660, 720
BfmI CTRYAG 1 cut(s) 325
BfoI RGCGCY 2 cut(s) 224, 333
BglII AGATCT 1 cut(s) 7
BisI GCNGC 2 cut(s) 273, 367
BlsI GCNGC 2 cut(s) 274, 368
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 2 cut(s) 506, 706
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 2 cut(s) 506, 706
BmsI GCATC 1 cut(s) 592
BpmI CTGGAG 1 cut(s) 709
BpuEI CTTGAG 3 cut(s) 32, 104, 626
BpuMI CCSGG 2 cut(s) 506, 706
BsaJI CCNNGG 2 cut(s) 538, 566
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 649, 679
Bse1I ACTGG 4 cut(s) 212, 293, 632, 726
Bse3DI GCAATG 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 538, 566
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 2 cut(s) 152, 686
BseNI ACTGG 4 cut(s) 212, 293, 632, 726
BseRI GAGGAG 7 cut(s) 62, 421, 441, 508, 511, 514, 593
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 3 cut(s) 119, 223, 455
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 3 cut(s) 366, 483, 643
BshFI GGCC 2 cut(s) 292, 509
BsiSI CCGG 3 cut(s) 443, 506, 706
BsiWI CGTACG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 618
BsnI GGCC 2 cut(s) 292, 509
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
Bsp19I CCATGG 1 cut(s) 566
BspACI CCGC 5 cut(s) 158, 366, 470, 481, 528
BspANI GGCC 2 cut(s) 292, 509
BspCNI CTCAG 2 cut(s) 153, 685
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 3 cut(s) 366, 483, 643
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 5 cut(s) 210, 420, 433, 556, 725
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 4 cut(s) 212, 293, 632, 726
BssECI CCNNGG 2 cut(s) 538, 566
BssMI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 570
BstAPI GCANNNNNTGC 2 cut(s) 359, 686
BstC8I GCNNGC 3 cut(s) 219, 364, 682
BstDEI CTNAG 3 cut(s) 61, 161, 672
BstDSI CCRYGG 2 cut(s) 538, 566
BstEII GGTNACC 1 cut(s) 488
BstFNI CGCG 3 cut(s) 366, 483, 643
BstH2I RGCGCY 2 cut(s) 224, 333
BstHHI GCGC 3 cut(s) 223, 332, 643
BstKTI GATC 7 cut(s) 10, 42, 205, 428, 547, 564, 733
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
BstMWI GCNNNNNNNGC 3 cut(s) 120, 359, 686
BstNSI RCATGY 1 cut(s) 745
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 504, 704
BstSFI CTRYAG 1 cut(s) 325
BstUI CGCG 3 cut(s) 366, 483, 643
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 3 cut(s) 7, 202, 425
BstYI RGATCY 3 cut(s) 7, 202, 425
BsuRI GGCC 2 cut(s) 292, 509
BtgI CCRYGG 2 cut(s) 538, 566
BtrI CACGTC 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 4 cut(s) 183, 219, 355, 733
Cac8I GCNNGC 3 cut(s) 219, 364, 682
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 3 cut(s) 223, 332, 643
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 184, 286, 714
CspCI CAANNNNNGTGG 2 cut(s) 520, 555
CviAII CATG 5 cut(s) 379, 512, 567, 686, 742
CviQI GTAC 3 cut(s) 184, 286, 714
DdeI CTNAG 3 cut(s) 61, 161, 672
DpnI GATC 7 cut(s) 9, 41, 204, 427, 546, 563, 732
DpnII GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 566
Eco32I GATATC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 488
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 5 cut(s) 382, 515, 570, 689, 745
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 5 cut(s) 378, 511, 566, 685, 741
Fnu4HI GCNGC 2 cut(s) 273, 367
Fsp4HI GCNGC 2 cut(s) 273, 367
FspBI CTAG 2 cut(s) 660, 720
GlaI GCGC 3 cut(s) 222, 331, 642
GluI GCNGC 2 cut(s) 273, 367
GsaI CCCAGC 3 cut(s) 123, 227, 459
GsuI CTGGAG 1 cut(s) 709
HaeII RGCGCY 2 cut(s) 224, 333
HaeIII GGCC 2 cut(s) 292, 509
HapII CCGG 3 cut(s) 443, 506, 706
HhaI GCGC 3 cut(s) 223, 332, 643
Hin1II CATG 5 cut(s) 382, 515, 570, 689, 745
Hin6I GCGC 3 cut(s) 221, 330, 641
HinP1I GCGC 3 cut(s) 221, 330, 641
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 3 cut(s) 16, 446, 664
HpaII CCGG 3 cut(s) 443, 506, 706
HphI GGTGA 1 cut(s) 500
Hpy188I TCNGA 2 cut(s) 396, 499
Hpy188III TCNNGA 3 cut(s) 11, 443, 605
Hpy99I CGWCG 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 217, 348, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 359, 686
HpyF3I CTNAG 3 cut(s) 61, 161, 672
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 5 cut(s) 382, 515, 570, 689, 745
HspAI GCGC 3 cut(s) 221, 330, 641
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
LmnI GCTCC 2 cut(s) 580, 728
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 592
MaeI CTAG 2 cut(s) 660, 720
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 488
MalI GATC 7 cut(s) 9, 41, 204, 427, 546, 563, 732
MboI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
MboII GAAGA 3 cut(s) 49, 587, 761
MflI RGATCY 3 cut(s) 7, 202, 425
MluCI AATT 4 cut(s) 298, 597, 611, 646
MlyI GAGTC 3 cut(s) 25, 440, 658
MroI TCCGGA 1 cut(s) 442
MseI TTAA 2 cut(s) 110, 596
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 3 cut(s) 443, 506, 706
MspR9I CCNGG 2 cut(s) 506, 706
MvnI CGCG 3 cut(s) 366, 483, 643
MwoI GCNNNNNNNGC 3 cut(s) 120, 359, 686
NciI CCSGG 2 cut(s) 506, 706
NcoI CCATGG 1 cut(s) 566
NdeII GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
NlaIII CATG 5 cut(s) 382, 515, 570, 689, 745
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 745
Pfl23II CGTACG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 274, 368
PleI GAGTC 3 cut(s) 24, 440, 658
PpsI GAGTC 3 cut(s) 24, 440, 658
PspEI GGTNACC 1 cut(s) 488
PspFI CCCAGC 3 cut(s) 119, 223, 455
PspLI CGTACG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 3 cut(s) 7, 202, 425
RsaI GTAC 3 cut(s) 185, 287, 715
RsaNI GTAC 3 cut(s) 184, 286, 714
SaqAI TTAA 2 cut(s) 110, 596
SatI GCNGC 2 cut(s) 273, 367
Sau3AI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 730
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 3 cut(s) 25, 440, 658
ScrFI CCNGG 2 cut(s) 506, 706
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 1 cut(s) 325
SmlI CTYRAG 3 cut(s) 11, 83, 605
SmoI CTYRAG 3 cut(s) 11, 83, 605
Sse9I AATT 4 cut(s) 298, 597, 611, 646
SsiI CCGC 5 cut(s) 158, 366, 470, 481, 528
SspI AATATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 660, 720
StyD4I CCNGG 2 cut(s) 504, 704
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 586
TasI AATT 4 cut(s) 298, 597, 611, 646
TatI WGTACW 2 cut(s) 285, 713
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 2 cut(s) 110, 596
Tru9I TTAA 2 cut(s) 110, 596
TscAI CASTG 4 cut(s) 183, 219, 355, 733
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 119, 367
TspGWI ACGGA 3 cut(s) 201, 212, 438
TspRI CASTG 4 cut(s) 183, 219, 355, 733
XapI RAATTY 1 cut(s) 298
XceI RCATGY 1 cut(s) 745
XspI CTAG 2 cut(s) 660, 720
ZrmI AGTACT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.