RLG00000015426
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003904
Physical Location & Seq
Reverse (-)
65897443 .. 65898336
894 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015426

Sequence Viewer

Length: 771 bp
ATGGCAGATCTTGAGTGTCAAAAGATTAGAAAGACCAAGATCAGCTTCAAACTCATCGTCTTAGATATTCTCCTCGTCATACTTGAGAGGCTTACAATGTGGCTTTTGTTAAGCTATCCCAGCTTTGTTCATTTTTTCTGTTCCACAGGCTTTACTCCGCTGAGATTACATATCTCAGTGTCGTACGGATATCTTACGGAGGATCTTACATCAGTGGCGCTGGGAGAATATTATCTTTTATTGTTGATTGAGCGATTTGTGAGCTTTGCTGCTATATACTTGTACTGGCCTACAAACTTTTGGTGTATAGTGGTCGCGACCGTTTCCTGTAGCGCCATGTCCACTGTATGCAGTGCAACCATTGCTCGCGGCACATATTTCATAGCTTTAGAAAAGCGGAAAGAGAAACAGAAAAAGAAAGACTACGGATCCTCCTCTCCTCCCAGCTACGACCCACCGCTTCACGTCCGCGACGGTGACCTGTCTGACGACCCGGCCCGTGCCTCCTCCTCCTTCACCAAACGCCGTGGAGATCGTCAAAAGAGAGCGATCCCATGGGCAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTGAGAAAGTGGGGAAAGGAGACTGGCGTGGGATAGCGCGAAATTATGTAACGACTAGGACTCCTACTCAGGTGGCAAGCCATGCCCAGAAGTATTTTACCCGGCAGAGTACTTCTAGCTCCAGTGATCCACCTCACATGCCAGAAGAACAAGCTTTGCTGTTGGGGTCATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.12

Weight (kDa)

9.12

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 185 - 230 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 317, 369, 471, 631
AciI CCGC 5 cut(s) 158, 369, 397, 458, 469
AclWI GGATC 5 cut(s) 210, 423, 436, 544, 713
AfaI GTAC 3 cut(s) 185, 284, 703
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 8 cut(s) 45, 114, 123, 264, 386, 447, 711, 746
AluI AGCT 8 cut(s) 45, 114, 123, 264, 386, 447, 711, 746
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 5 cut(s) 210, 423, 436, 544, 713
AoxI GGCC 2 cut(s) 287, 495
ApeKI GCWGC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 3 cut(s) 220, 335, 631
AspS9I GGNCC 1 cut(s) 496
AsuC2I CCSGG 2 cut(s) 494, 694
AsuHPI GGTGA 2 cut(s) 488, 508
BamHI GGATCC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 510
BcnI CCSGG 2 cut(s) 494, 694
BcoDI GTCTC 1 cut(s) 606
BfaI CTAG 2 cut(s) 648, 708
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 2 cut(s) 221, 336
BglII AGATCT 1 cut(s) 7
BisI GCNGC 2 cut(s) 270, 370
BlsI GCNGC 2 cut(s) 271, 371
BmcAI AGTACT 1 cut(s) 703
Bme1390I CCNGG 2 cut(s) 494, 694
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 494, 694
BmsI GCATC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 697
BpuEI CTTGAG 3 cut(s) 32, 104, 614
BpuMI CCSGG 2 cut(s) 494, 694
BsaJI CCNNGG 2 cut(s) 526, 554
BsaXI ACNNNNNCTCC 4 cut(s) 416, 446, 637, 667
Bse1I ACTGG 3 cut(s) 290, 620, 714
Bse3DI GCAATG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 526, 554
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 152, 189, 674
BseNI ACTGG 3 cut(s) 290, 620, 714
BseRI GAGGAG 6 cut(s) 62, 424, 429, 496, 499, 581
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 3 cut(s) 119, 220, 443
Bsh1236I CGCG 4 cut(s) 317, 369, 471, 631
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 289, 497
BsiEI CGRYCG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 494, 694
BsiWI CGTACG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 606
BsnI GGCC 2 cut(s) 289, 497
Bsp143I GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
Bsp19I CCATGG 1 cut(s) 554
Bsp68I TCGCGA 1 cut(s) 317
BspACI CCGC 5 cut(s) 158, 369, 397, 458, 469
BspANI GGCC 2 cut(s) 289, 497
BspCNI CTCAG 3 cut(s) 153, 188, 673
BspFNI CGCG 4 cut(s) 317, 369, 471, 631
BspLI GGNNCC 1 cut(s) 430
BspPI GGATC 5 cut(s) 210, 423, 436, 544, 713
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 3 cut(s) 290, 620, 714
BssECI CCNNGG 2 cut(s) 526, 554
BssMI GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
BssT1I CCWWGG 1 cut(s) 554
Bst4CI ACNGT 3 cut(s) 322, 346, 476
Bst6I CTCTTC 1 cut(s) 558
BstAPI GCANNNNNTGC 2 cut(s) 362, 674
BstC8I GCNNGC 2 cut(s) 367, 670
BstDEI CTNAG 4 cut(s) 61, 161, 175, 660
BstDSI CCRYGG 2 cut(s) 526, 554
BstEII GGTNACC 1 cut(s) 476
BstFNI CGCG 4 cut(s) 317, 369, 471, 631
BstH2I RGCGCY 2 cut(s) 221, 336
BstHHI GCGC 3 cut(s) 220, 335, 631
BstKTI GATC 7 cut(s) 10, 42, 205, 431, 535, 552, 721
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 3 cut(s) 120, 362, 674
BstNSI RCATGY 1 cut(s) 733
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 492, 692
BstSFI CTRYAG 1 cut(s) 328
BstUI CGCG 4 cut(s) 317, 369, 471, 631
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 3 cut(s) 7, 202, 428
BstYI RGATCY 3 cut(s) 7, 202, 428
BsuRI GGCC 2 cut(s) 289, 497
BtgI CCRYGG 2 cut(s) 526, 554
BtrI CACGTC 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 5 cut(s) 183, 219, 342, 358, 721
BtuMI TCGCGA 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 367, 670
CfoI GCGC 3 cut(s) 220, 335, 631
Cfr13I GGNCC 1 cut(s) 496
Csp6I GTAC 3 cut(s) 184, 283, 702
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 4 cut(s) 337, 555, 674, 730
CviQI GTAC 3 cut(s) 184, 283, 702
DdeI CTNAG 4 cut(s) 61, 161, 175, 660
DpnI GATC 7 cut(s) 9, 41, 204, 430, 534, 551, 720
DpnII GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 554
Eco32I GATATC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 476
EcoO65I GGTNACC 1 cut(s) 476
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 4 cut(s) 340, 558, 677, 733
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 4 cut(s) 336, 554, 673, 729
Fnu4HI GCNGC 2 cut(s) 270, 370
Fsp4HI GCNGC 2 cut(s) 270, 370
FspBI CTAG 2 cut(s) 648, 708
GlaI GCGC 3 cut(s) 219, 334, 630
GluI GCNGC 2 cut(s) 270, 370
GsaI CCCAGC 3 cut(s) 123, 224, 447
GsuI CTGGAG 1 cut(s) 697
HaeII RGCGCY 2 cut(s) 221, 336
HaeIII GGCC 2 cut(s) 289, 497
HapII CCGG 2 cut(s) 494, 694
HhaI GCGC 3 cut(s) 220, 335, 631
Hin1II CATG 4 cut(s) 340, 558, 677, 733
Hin6I GCGC 3 cut(s) 218, 333, 629
HinP1I GCGC 3 cut(s) 218, 333, 629
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 1 cut(s) 652
HpaII CCGG 2 cut(s) 494, 694
HphI GGTGA 2 cut(s) 488, 508
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 3 cut(s) 11, 316, 593
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 3 cut(s) 322, 346, 476
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 2 cut(s) 351, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 362, 674
HpyF3I CTNAG 4 cut(s) 61, 161, 175, 660
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 4 cut(s) 340, 558, 677, 733
HspAI GCGC 3 cut(s) 218, 333, 629
Kzo9I GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
LmnI GCTCC 2 cut(s) 568, 716
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 580
MaeI CTAG 2 cut(s) 648, 708
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 476, 640
MalI GATC 7 cut(s) 9, 41, 204, 430, 534, 551, 720
MboI GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
MboII GAAGA 2 cut(s) 575, 749
MflI RGATCY 3 cut(s) 7, 202, 428
MluCI AATT 2 cut(s) 585, 634
MlyI GAGTC 1 cut(s) 646
MseI TTAA 2 cut(s) 110, 584
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 2 cut(s) 494, 694
MspR9I CCNGG 2 cut(s) 494, 694
MvnI CGCG 4 cut(s) 317, 369, 471, 631
MwoI GCNNNNNNNGC 3 cut(s) 120, 362, 674
NciI CCSGG 2 cut(s) 494, 694
NcoI CCATGG 1 cut(s) 554
NdeII GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
NlaIII CATG 4 cut(s) 340, 558, 677, 733
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 476
NruI TCGCGA 1 cut(s) 317
NspI RCATGY 1 cut(s) 733
Pfl23II CGTACG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 271, 371
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PspEI GGTNACC 1 cut(s) 476
PspFI CCCAGC 3 cut(s) 119, 220, 443
PspLI CGTACG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 496
PsuI RGATCY 3 cut(s) 7, 202, 428
RruI TCGCGA 1 cut(s) 317
RsaI GTAC 3 cut(s) 185, 284, 703
RsaNI GTAC 3 cut(s) 184, 283, 702
SaqAI TTAA 2 cut(s) 110, 584
SatI GCNGC 2 cut(s) 270, 370
Sau3AI GATC 7 cut(s) 7, 39, 202, 428, 532, 549, 718
Sau96I GGNCC 1 cut(s) 496
ScaI AGTACT 1 cut(s) 703
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 2 cut(s) 494, 694
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 328
SmlI CTYRAG 3 cut(s) 11, 83, 593
SmoI CTYRAG 3 cut(s) 11, 83, 593
Sse9I AATT 2 cut(s) 585, 634
SsiI CCGC 5 cut(s) 158, 369, 397, 458, 469
SspI AATATT 1 cut(s) 230
SspMI CTAG 2 cut(s) 648, 708
StyD4I CCNGG 2 cut(s) 492, 692
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 3 cut(s) 322, 346, 476
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 574
TasI AATT 2 cut(s) 585, 634
TatI WGTACW 2 cut(s) 282, 701
TauI GCSGC 1 cut(s) 372
Tru1I TTAA 2 cut(s) 110, 584
Tru9I TTAA 2 cut(s) 110, 584
TscAI CASTG 5 cut(s) 183, 219, 349, 358, 721
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 119, 370
TspGWI ACGGA 3 cut(s) 201, 212, 441
TspRI CASTG 5 cut(s) 183, 219, 349, 358, 721
XceI RCATGY 1 cut(s) 733
XspI CTAG 2 cut(s) 648, 708
ZrmI AGTACT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.