Rmu_co8001466.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8001466.1
OG0003904
Physical Location & Seq
Forward (+)
1 .. 235
235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8001466.1_g000001.1.cds

Sequence Viewer

Length: 235 bp
aagagtgatcccatgggcagaagaggagcatcgaatgttcttaattggtcttgagaaattggggaaaggagactggcgtgggatagcgcgaaattatgtaaagactaggactcctactcaggtagcaagccatgcccacaggtattttacccggcagagtacttctagctccagtgatccacctcacatgccagaagaacaagctttgctgttggggtcatctatggtagcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

77

Amino Acids

8.75

Weight (kDa)

9.4

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 89
AclWI GGATC 2 cut(s) 2, 171
AfaI GTAC 1 cut(s) 161
AluBI AGCT 2 cut(s) 169, 204
AluI AGCT 2 cut(s) 169, 204
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 2 cut(s) 2, 171
AspLEI GCGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 152
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 2 cut(s) 106, 166
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse1I ACTGG 2 cut(s) 78, 172
BseDI CCNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 78, 172
BseRI GAGGAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 7, 176
Bsp19I CCATGG 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 131
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 2 cut(s) 2, 171
BsrI ACTGG 2 cut(s) 78, 172
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 7, 176
BssT1I CCWWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 10, 179
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 7, 176
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 160
CviAII CATG 3 cut(s) 13, 132, 188
CviJI RGCY 4 cut(s) 130, 169, 204, 231
CviKI_1 RGCY 4 cut(s) 130, 169, 204, 231
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 118
DpnI GATC 2 cut(s) 9, 178
DpnII GATC 2 cut(s) 7, 176
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 135, 191
FaiI YATR 5 cut(s) 14, 97, 133, 189, 225
FatI CATG 3 cut(s) 12, 131, 187
FspBI CTAG 2 cut(s) 106, 166
GlaI GCGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 155
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 89
Hin1II CATG 3 cut(s) 16, 135, 191
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 3 cut(s) 16, 135, 191
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 7, 176
LmnI GCTCC 2 cut(s) 26, 174
LpnPI CCDG 6 cut(s) 59, 105, 125, 165, 185, 205
LweI GCATC 1 cut(s) 38
MaeI CTAG 2 cut(s) 106, 166
MalI GATC 2 cut(s) 9, 178
MboI GATC 2 cut(s) 7, 176
MboII GAAGA 2 cut(s) 33, 207
MluCI AATT 3 cut(s) 43, 57, 92
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 17, 193
MseI TTAA 1 cut(s) 42
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 7, 176
NlaIII CATG 3 cut(s) 16, 135, 191
NspI RCATGY 1 cut(s) 191
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 2 cut(s) 7, 176
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 152
SetI ASST 5 cut(s) 124, 144, 171, 185, 206
SfaNI GCATC 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 3 cut(s) 43, 57, 92
SspMI CTAG 2 cut(s) 106, 166
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 12
TaqI TCGA 1 cut(s) 32
TasI AATT 3 cut(s) 43, 57, 92
TatI WGTACW 1 cut(s) 159
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 179
TspRI CASTG 1 cut(s) 179
XceI RCATGY 1 cut(s) 191
XspI CTAG 2 cut(s) 106, 166
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.