Rh7BG029300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003904
Physical Location & Seq
Forward (+)
1994921 .. 1997275
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG029300.1

Sequence Viewer

Length: 906 bp
ATGTCCTCCGGCACCTGCTCCTCCACCGTCGATCCCGCCGCCGGCGCGGCCAAAGAGTTCATGCTGTTCGGCGTGCGCGTGGTGGTCGACTCCATGAGGAAGAGCGTCAGTCTCAACAATCTCTCGCAGTACGAACACCCTACCGAGGCCTCCAACAACAATAACAGCTCCGGCGCCGGCAAGGACGACGCCGTCGCTGGTTACGTATCTGAGAACGACGTCGTTCACAATTCTGGCGGGAATCGCGAGCGAGAACGCAAGCGAGGAGTTCCGTGGACGGAGGATGAACACAAGCTATTTCTGGTTGGATTGCAGAAAGTAGGGAAAGGAGATTGGAGAGGGATCTCAAGGAACTATGTCAAGACTCGCACGCCGACTCAGGTGGCCAGCCATGCTCAGAAATACTTTCTCCGCCGGAGCAACCACAATCGCCGCCGCCGCAGATCTAGCCTATTTGATATCACCACCGATTCGGTCCCTGCAATTCCAATGGAAGAAGAGCAAGCACATCATCAAGATAACACATCTCACTCGCACTCGTTGCCACCACCTCCACCACAATCCGAATCTTGCAATCCTAATGGATTTTCGATGGTGCCAATTTTTCCAATGAACGTAGGTCCAGCTGTTGTACAAGTCCCCACTAAGAAACCAACAGGAAATCTGACACTGGGACAAGGAAATCCGGGGTGTCCTTCCCCTAAGATCGTCCATCCAGTTGCTCTGCACTCGGCCCCTCATGCTACAGAAGCATCTGATCTAAACTTGAATGCGACAATTGACACATCGCCTCTAGCTCTCAACCTCTCCTTGTCAATGAACTCGAGGGAATCATCGTCAAGGCATTCGGCTTTCCAAGCAATGTCAAGCTTCGGCAATGGGGACAACATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

301

Amino Acids

32.51

Weight (kDa)

8.78

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 90 - 136 5.2e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
AasI GACNNNNNNGTC 1 cut(s) 191
AatII GACGTC 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 3 cut(s) 11, 173, 595
AccI GTMKAC 1 cut(s) 87
AccII CGCG 3 cut(s) 47, 78, 246
AciI CCGC 8 cut(s) 36, 39, 47, 237, 412, 433, 436, 439
AclWI GGATC 2 cut(s) 26, 350
AcoI YGGCCR 2 cut(s) 48, 384
AcyI GRCGYC 3 cut(s) 174, 189, 219
AfaI GTAC 2 cut(s) 131, 633
AfiI CCNNNNNNNGG 2 cut(s) 41, 145
AgsI TTSAA 1 cut(s) 769
AluBI AGCT 5 cut(s) 168, 295, 626, 797, 870
AluI AGCT 5 cut(s) 168, 295, 626, 797, 870
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 26, 350
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 4 cut(s) 48, 147, 384, 732
AspLEI GCGC 3 cut(s) 47, 78, 176
AspS9I GGNCC 3 cut(s) 475, 620, 733
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 2 cut(s) 475, 620
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 3 cut(s) 11, 173, 595
BccI CCATC 2 cut(s) 586, 720
BceAI ACGGC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 447, 794
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 443
BisI GCNGC 5 cut(s) 39, 48, 433, 436, 439
BlsI GCNGC 5 cut(s) 40, 49, 434, 437, 440
Bme1390I CCNGG 1 cut(s) 687
Bme18I GGWCC 2 cut(s) 475, 620
BmeT110I CYCGRG 1 cut(s) 823
BmgT120I GGNCC 3 cut(s) 475, 620, 733
BmiI GGNNCC 5 cut(s) 13, 175, 477, 597, 735
BmrFI CCNGG 1 cut(s) 687
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 1 cut(s) 761
BmuI ACTGGG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 205
BsaHI GRCGYC 3 cut(s) 174, 189, 219
BsaJI CCNNGG 3 cut(s) 144, 272, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 145
Bse118I RCCGGY 2 cut(s) 41, 176
Bse1I ACTGG 2 cut(s) 675, 716
Bse3DI GCAATG 2 cut(s) 867, 883
BseDI CCNNGG 3 cut(s) 144, 272, 686
BseGI GGATG 2 cut(s) 289, 712
BseLI CCNNNNNNNGG 2 cut(s) 41, 145
BseMI GCAATG 2 cut(s) 867, 883
BseMII CTCAG 3 cut(s) 201, 392, 410
BseNI ACTGG 2 cut(s) 675, 716
BseRI GAGGAG 2 cut(s) 10, 279
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 3 cut(s) 47, 78, 246
BshFI GGCC 4 cut(s) 50, 149, 386, 734
BshNI GGYRCC 3 cut(s) 11, 173, 595
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 6 cut(s) 9, 42, 171, 177, 415, 686
BslFI GGGAC 4 cut(s) 461, 623, 687, 896
BslI CCNNNNNNNGG 2 cut(s) 41, 145
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 4 cut(s) 461, 623, 687, 896
BsmI GAATGC 2 cut(s) 775, 844
BsnI GGCC 4 cut(s) 50, 149, 386, 734
BsoBI CYCGRG 1 cut(s) 823
Bsp1407I TGTACA 1 cut(s) 631
Bsp143I GATC 5 cut(s) 31, 342, 443, 705, 757
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 8 cut(s) 36, 39, 47, 237, 412, 433, 436, 439
BspANI GGCC 4 cut(s) 50, 149, 386, 734
BspCNI CTCAG 3 cut(s) 202, 391, 409
BspFNI CGCG 3 cut(s) 47, 78, 246
BspLI GGNNCC 5 cut(s) 13, 175, 477, 597, 735
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 26, 350
BspQI GCTCTTC 2 cut(s) 95, 492
BspT107I GGYRCC 3 cut(s) 11, 173, 595
BsrDI GCAATG 2 cut(s) 867, 883
BsrFI RCCGGY 2 cut(s) 41, 176
BsrGI TGTACA 1 cut(s) 631
BsrI ACTGG 2 cut(s) 675, 716
BssAI RCCGGY 2 cut(s) 41, 176
BssECI CCNNGG 3 cut(s) 144, 272, 686
BssMI GATC 5 cut(s) 31, 342, 443, 705, 757
BssNI GRCGYC 3 cut(s) 174, 189, 219
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 95, 492
BstACI GRCGYC 3 cut(s) 174, 189, 219
BstAPI GCANNNNNTGC 1 cut(s) 541
BstAUI TGTACA 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 8 cut(s) 43, 74, 178, 248, 260, 371, 388, 504
BstDEI CTNAG 5 cut(s) 210, 378, 396, 645, 702
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 289, 712
BstFNI CGCG 3 cut(s) 47, 78, 246
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 3 cut(s) 47, 78, 176
BstKTI GATC 5 cut(s) 34, 345, 446, 708, 760
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 5 cut(s) 31, 342, 443, 705, 757
BstSCI CCNGG 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 744
BstSNI TACGTA 1 cut(s) 205
BstUI CGCG 3 cut(s) 47, 78, 246
BstX2I RGATCY 2 cut(s) 342, 443
BstYI RGATCY 2 cut(s) 342, 443
BsuRI GGCC 4 cut(s) 50, 149, 386, 734
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 2 cut(s) 289, 712
BtsIMutI CAGTG 2 cut(s) 668, 901
BtuMI TCGCGA 1 cut(s) 246
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 8 cut(s) 43, 74, 178, 248, 260, 371, 388, 504
CfoI GCGC 3 cut(s) 47, 78, 176
Cfr10I RCCGGY 2 cut(s) 41, 176
Cfr13I GGNCC 3 cut(s) 475, 620, 733
CseI GACGC 2 cut(s) 94, 197
Csp6I GTAC 2 cut(s) 130, 632
CviAII CATG 4 cut(s) 61, 94, 392, 740
CviQI GTAC 2 cut(s) 130, 632
DdeI CTNAG 5 cut(s) 210, 378, 396, 645, 702
DinI GGCGCC 1 cut(s) 175
DpnI GATC 5 cut(s) 33, 344, 445, 707, 759
DpnII GATC 5 cut(s) 31, 342, 443, 705, 757
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 2 cut(s) 48, 384
Eam1104I CTCTTC 2 cut(s) 95, 492
EarI CTCTTC 2 cut(s) 95, 492
EciI GGCGGA 1 cut(s) 401
Eco105I TACGTA 1 cut(s) 205
Eco147I AGGCCT 1 cut(s) 149
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 475, 620
Eco88I CYCGRG 1 cut(s) 823
EcoRV GATATC 1 cut(s) 460
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
FaeI CATG 4 cut(s) 64, 97, 395, 743
FaiI YATR 5 cut(s) 62, 95, 357, 393, 741
FaqI GGGAC 4 cut(s) 461, 623, 687, 896
FatI CATG 4 cut(s) 60, 93, 391, 739
FauI CCCGC 2 cut(s) 43, 230
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 39, 48, 433, 436, 439
FokI GGATG 2 cut(s) 296, 699
Fsp4HI GCNGC 5 cut(s) 39, 48, 433, 436, 439
FspBI CTAG 2 cut(s) 447, 794
GlaI GCGC 3 cut(s) 46, 77, 175
GluI GCNGC 5 cut(s) 39, 48, 433, 436, 439
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 4 cut(s) 50, 149, 386, 734
HapII CCGG 6 cut(s) 9, 42, 171, 177, 415, 686
HgaI GACGC 2 cut(s) 94, 197
HhaI GCGC 3 cut(s) 47, 78, 176
Hin1I GRCGYC 3 cut(s) 174, 189, 219
Hin1II CATG 4 cut(s) 64, 97, 395, 743
Hin6I GCGC 3 cut(s) 45, 76, 174
HinP1I GCGC 3 cut(s) 45, 76, 174
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 7 cut(s) 89, 241, 364, 376, 470, 566, 830
HpaII CCGG 6 cut(s) 9, 42, 171, 177, 415, 686
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 3 cut(s) 88, 226, 276
Hpy188I TCNGA 5 cut(s) 211, 399, 565, 666, 757
Hpy188III TCNNGA 3 cut(s) 245, 361, 515
Hpy8I GTNNAC 3 cut(s) 88, 226, 276
Hpy99I CGWCG 5 cut(s) 32, 191, 197, 221, 224
HpyAV CCTTC 1 cut(s) 705
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 3 cut(s) 204, 219, 615
HpyCH4V TGCA 4 cut(s) 313, 482, 573, 727
HpyF3I CTNAG 5 cut(s) 210, 378, 396, 645, 702
HpySE526I ACGT 3 cut(s) 204, 219, 615
Hsp92I GRCGYC 3 cut(s) 174, 189, 219
Hsp92II CATG 4 cut(s) 64, 97, 395, 743
HspAI GCGC 3 cut(s) 45, 76, 174
KasI GGCGCC 1 cut(s) 173
KroI GCCGGC 2 cut(s) 41, 176
KroNI GCCGGC 2 cut(s) 43, 178
Kzo9I GATC 5 cut(s) 31, 342, 443, 705, 757
LguI GCTCTTC 2 cut(s) 95, 492
LmnI GCTCC 3 cut(s) 23, 173, 417
LweI GCATC 1 cut(s) 761
MaeI CTAG 2 cut(s) 447, 794
MaeII ACGT 3 cut(s) 204, 219, 615
MaeIII GTNAC 1 cut(s) 200
MalI GATC 5 cut(s) 33, 344, 445, 707, 759
MboI GATC 5 cut(s) 31, 342, 443, 705, 757
MboII GAAGA 3 cut(s) 112, 506, 509
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 2 cut(s) 342, 443
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 229, 483, 600, 777
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 174
MlyI GAGTC 3 cut(s) 83, 358, 370
MmeI TCCRAC 2 cut(s) 177, 286
Mox20I TGGCCA 1 cut(s) 386
MreI CGCCGGCG 1 cut(s) 41
MroNI GCCGGC 2 cut(s) 41, 176
MscI TGGCCA 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 6 cut(s) 9, 42, 171, 177, 415, 686
MspR9I CCNGG 1 cut(s) 687
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 2 cut(s) 775, 844
MvnI CGCG 3 cut(s) 47, 78, 246
NaeI GCCGGC 2 cut(s) 43, 178
NarI GGCGCC 1 cut(s) 174
NciI CCSGG 1 cut(s) 687
NdeII GATC 5 cut(s) 31, 342, 443, 705, 757
NgoMIV GCCGGC 2 cut(s) 41, 176
NlaIII CATG 4 cut(s) 64, 97, 395, 743
NlaIV GGNNCC 5 cut(s) 13, 175, 477, 597, 735
NmeAIII GCCGAG 1 cut(s) 710
NruI TCGCGA 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 823
PaqCI CACCTGC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 2 cut(s) 95, 492
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 201
PctI GAATGC 2 cut(s) 775, 844
PdiI GCCGGC 2 cut(s) 43, 178
PfeI GAWTC 4 cut(s) 241, 470, 566, 830
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 5 cut(s) 40, 49, 434, 437, 440
PleI GAGTC 3 cut(s) 83, 358, 370
PluTI GGCGCC 1 cut(s) 177
PpsI GAGTC 3 cut(s) 83, 358, 370
Ppu21I YACGTR 1 cut(s) 205
PspN4I GGNNCC 5 cut(s) 13, 175, 477, 597, 735
PspPI GGNCC 3 cut(s) 475, 620, 733
PspXI VCTCGAGB 1 cut(s) 823
PsuI RGATCY 2 cut(s) 342, 443
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 626
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 2 cut(s) 131, 633
RsaNI GTAC 2 cut(s) 130, 632
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 2 cut(s) 95, 492
SatI GCNGC 5 cut(s) 39, 48, 433, 436, 439
Sau3AI GATC 5 cut(s) 31, 342, 443, 705, 757
Sau96I GGNCC 3 cut(s) 475, 620, 733
SchI GAGTC 3 cut(s) 83, 358, 370
ScrFI CCNGG 1 cut(s) 687
SfaNI GCATC 1 cut(s) 761
SfcI CTRYAG 1 cut(s) 744
SfoI GGCGCC 1 cut(s) 175
Sfr274I CTCGAG 1 cut(s) 823
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 2 cut(s) 475, 620
SlaI CTCGAG 1 cut(s) 823
SmlI CTYRAG 2 cut(s) 346, 823
SmoI CTYRAG 2 cut(s) 346, 823
SnaBI TACGTA 1 cut(s) 205
Sse9I AATT 4 cut(s) 229, 483, 600, 777
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 8 cut(s) 36, 39, 47, 237, 412, 433, 436, 439
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 2 cut(s) 447, 794
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 3 cut(s) 207, 222, 618
TaqI TCGA 4 cut(s) 30, 87, 590, 824
TaqII GACCGA 1 cut(s) 463
TasI AATT 4 cut(s) 229, 483, 600, 777
TatI WGTACW 1 cut(s) 631
TauI GCSGC 5 cut(s) 41, 50, 435, 438, 441
TfiI GAWTC 4 cut(s) 241, 470, 566, 830
TscAI CASTG 2 cut(s) 675, 901
TspDTI ATGAA 4 cut(s) 49, 300, 626, 833
TspGWI ACGGA 2 cut(s) 261, 293
TspRI CASTG 2 cut(s) 675, 901
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 475, 620
XhoI CTCGAG 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 447, 794
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.