Rh6CG010700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003904
Physical Location & Seq
Forward (+)
1217375 .. 1218357
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG010700.1

Sequence Viewer

Length: 786 bp
ATGGCAGATCTTGAGAGTCAAAAGATTAGAAAGACCAAGATCAGCTTCAAACTCATCGTCTTAGATATTCTCCTCGTCATACTTGAGAGGCTTACAATGTGGCTTTTGTTAAGCTATCCCAGCTTTGTTCATTTTTTCTGTTCCACGGGCTTTACTCCGCTGAGATTACATATCTCAGTGTCGTACGGATATCTTACGGAGGATCTTACATCAGTGGCGCTGGGAGAATATTATCTTTTATTGTTGATTGAGCGATTTGTGAGCTTTGCTGCTATATACTTGTACCGGCCTACAAGCTTTTGGTGTATTGTGGTCGTTTCCTGTAGCGCCATATCCACTATATGCAGTGCAACCATTGCTCGCAGCACATATTTCATATTTTCAGAAAATCGGAAAGAGAAACAGAAAGAGAAAGACTACAGATCCTCCTCTCCCAATCCGGACTCTCCACCCAGCTACGACCCGCCGCTTCATGTCCGCGACCGTGACCTGTCAGACGACCCGGCCCATGCCTCCTCCTCCTCCGCCAATCGCCGTGGAGATCGTCAAAAAAGAATGATCCCATGGGCAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTGAGAAATTGGGGAAAGGAGACTGGCGTGGGATAGCGCGAAATTATGTAAAGACTAGGACTCCTACTCAGGTGGCAAGCCATGCCCACAGGTATTTTACCCGGCAGAGTACTTCTAGCTCCAGTGATCCGCCTCACATGCCAGAAGAACAAGCTTTGCTGTTGGGTTCATCTATGGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

261

Amino Acids

29.83

Weight (kDa)

8.97

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 188 - 232 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 480, 640
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 6 cut(s) 158, 464, 467, 478, 525, 731
AclWI GGATC 4 cut(s) 210, 417, 553, 722
AfaI GTAC 3 cut(s) 185, 284, 712
AgsI TTSAA 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 8 cut(s) 45, 114, 123, 264, 297, 456, 720, 755
AluI AGCT 8 cut(s) 45, 114, 123, 264, 297, 456, 720, 755
Alw26I GTCTC 1 cut(s) 615
AlwI GGATC 4 cut(s) 210, 417, 553, 722
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 2 cut(s) 287, 504
ApeKI GCWGC 2 cut(s) 269, 363
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 3 cut(s) 220, 329, 640
AspS9I GGNCC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 503, 703
BbvI GCAGC 2 cut(s) 256, 375
BceAI ACGGC 1 cut(s) 519
BcnI CCSGG 2 cut(s) 503, 703
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 2 cut(s) 657, 717
BfmI CTRYAG 2 cut(s) 322, 418
BfoI RGCGCY 2 cut(s) 221, 330
BglII AGATCT 1 cut(s) 7
BisI GCNGC 3 cut(s) 270, 364, 467
BlsI GCNGC 3 cut(s) 271, 365, 468
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 2 cut(s) 503, 703
BmgT120I GGNCC 1 cut(s) 505
BmrFI CCNGG 2 cut(s) 503, 703
BmsI GCATC 1 cut(s) 589
BpmI CTGGAG 1 cut(s) 706
BpuEI CTTGAG 3 cut(s) 32, 104, 623
BpuMI CCSGG 2 cut(s) 503, 703
BsaJI CCNNGG 3 cut(s) 144, 535, 563
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 646, 676
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 629, 723
Bse3DI GCAATG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 144, 535, 563
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 152, 189, 683
BseNI ACTGG 2 cut(s) 629, 723
BseRI GAGGAG 6 cut(s) 62, 418, 505, 508, 511, 590
BseXI GCAGC 2 cut(s) 256, 375
BseYI CCCAGC 3 cut(s) 119, 220, 452
Bsh1236I CGCG 2 cut(s) 480, 640
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 2 cut(s) 289, 506
BsiEI CGRYCG 1 cut(s) 484
BsiSI CCGG 4 cut(s) 286, 440, 503, 703
BsiWI CGTACG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 615
BsnI GGCC 2 cut(s) 289, 506
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 6 cut(s) 158, 464, 467, 478, 525, 731
BspANI GGCC 2 cut(s) 289, 506
BspCNI CTCAG 3 cut(s) 153, 188, 682
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 2 cut(s) 480, 640
BspPI GGATC 4 cut(s) 210, 417, 553, 722
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 2 cut(s) 629, 723
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 144, 535, 563
BssMI GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
BssT1I CCWWGG 1 cut(s) 563
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 1 cut(s) 567
BstAPI GCANNNNNTGC 2 cut(s) 356, 683
BstC8I GCNNGC 2 cut(s) 361, 679
BstDEI CTNAG 4 cut(s) 61, 161, 175, 669
BstDSI CCRYGG 3 cut(s) 144, 535, 563
BstFNI CGCG 2 cut(s) 480, 640
BstH2I RGCGCY 2 cut(s) 221, 330
BstHHI GCGC 3 cut(s) 220, 329, 640
BstKTI GATC 7 cut(s) 10, 42, 205, 425, 544, 561, 730
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 4 cut(s) 120, 356, 683, 739
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 2 cut(s) 501, 701
BstSFI CTRYAG 2 cut(s) 322, 418
BstUI CGCG 2 cut(s) 480, 640
BstV1I GCAGC 2 cut(s) 256, 375
BstX2I RGATCY 3 cut(s) 7, 202, 422
BstYI RGATCY 3 cut(s) 7, 202, 422
BsuRI GGCC 2 cut(s) 289, 506
BtgI CCRYGG 3 cut(s) 144, 535, 563
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 4 cut(s) 183, 219, 352, 730
Cac8I GCNNGC 2 cut(s) 361, 679
CfoI GCGC 3 cut(s) 220, 329, 640
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 3 cut(s) 184, 283, 711
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 5 cut(s) 473, 509, 564, 683, 739
CviQI GTAC 3 cut(s) 184, 283, 711
DdeI CTNAG 4 cut(s) 61, 161, 175, 669
DpnI GATC 7 cut(s) 9, 41, 204, 424, 543, 560, 729
DpnII GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 2 cut(s) 514, 720
Eco130I CCWWGG 1 cut(s) 563
Eco32I GATATC 1 cut(s) 191
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 5 cut(s) 476, 512, 567, 686, 742
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 5 cut(s) 472, 508, 563, 682, 738
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 270, 364, 467
Fsp4HI GCNGC 3 cut(s) 270, 364, 467
FspBI CTAG 2 cut(s) 657, 717
GlaI GCGC 3 cut(s) 219, 328, 639
GluI GCNGC 3 cut(s) 270, 364, 467
GsaI CCCAGC 3 cut(s) 123, 224, 456
GsuI CTGGAG 1 cut(s) 706
HaeII RGCGCY 2 cut(s) 221, 330
HaeIII GGCC 2 cut(s) 289, 506
HapII CCGG 4 cut(s) 286, 440, 503, 703
HhaI GCGC 3 cut(s) 220, 329, 640
Hin1II CATG 5 cut(s) 476, 512, 567, 686, 742
Hin6I GCGC 3 cut(s) 218, 327, 638
HinP1I GCGC 3 cut(s) 218, 327, 638
HindIII AAGCTT 2 cut(s) 295, 753
HinfI GANTC 3 cut(s) 16, 443, 661
HpaII CCGG 4 cut(s) 286, 440, 503, 703
Hpy188I TCNGA 3 cut(s) 385, 393, 496
Hpy188III TCNNGA 3 cut(s) 11, 440, 602
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4V TGCA 2 cut(s) 345, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 356, 683, 739
HpyF3I CTNAG 4 cut(s) 61, 161, 175, 669
Hsp92II CATG 5 cut(s) 476, 512, 567, 686, 742
HspAI GCGC 3 cut(s) 218, 327, 638
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
LmnI GCTCC 2 cut(s) 577, 725
Lsp1109I GCAGC 2 cut(s) 256, 375
LweI GCATC 1 cut(s) 589
MaeI CTAG 2 cut(s) 657, 717
MaeIII GTNAC 1 cut(s) 485
MalI GATC 7 cut(s) 9, 41, 204, 424, 543, 560, 729
MboI GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
MboII GAAGA 2 cut(s) 584, 758
MflI RGATCY 3 cut(s) 7, 202, 422
MluCI AATT 3 cut(s) 594, 608, 643
MlyI GAGTC 3 cut(s) 25, 437, 655
MroI TCCGGA 1 cut(s) 439
MseI TTAA 2 cut(s) 110, 593
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 4 cut(s) 286, 440, 503, 703
MspR9I CCNGG 2 cut(s) 503, 703
MvnI CGCG 2 cut(s) 480, 640
MwoI GCNNNNNNNGC 4 cut(s) 120, 356, 683, 739
NciI CCSGG 2 cut(s) 503, 703
NcoI CCATGG 1 cut(s) 563
NdeII GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
NlaIII CATG 5 cut(s) 476, 512, 567, 686, 742
NmuCI GTSAC 1 cut(s) 485
NspI RCATGY 1 cut(s) 742
Pfl23II CGTACG 1 cut(s) 183
PkrI GCNGC 3 cut(s) 271, 365, 468
PleI GAGTC 3 cut(s) 24, 437, 655
PpsI GAGTC 3 cut(s) 24, 437, 655
PspFI CCCAGC 3 cut(s) 119, 220, 452
PspLI CGTACG 1 cut(s) 183
PspPI GGNCC 1 cut(s) 505
PsuI RGATCY 3 cut(s) 7, 202, 422
RsaI GTAC 3 cut(s) 185, 284, 712
RsaNI GTAC 3 cut(s) 184, 283, 711
SaqAI TTAA 2 cut(s) 110, 593
SatI GCNGC 3 cut(s) 270, 364, 467
Sau3AI GATC 7 cut(s) 7, 39, 202, 422, 541, 558, 727
Sau96I GGNCC 1 cut(s) 505
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 3 cut(s) 25, 437, 655
ScrFI CCNGG 2 cut(s) 503, 703
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 322, 418
SmlI CTYRAG 3 cut(s) 11, 83, 602
SmoI CTYRAG 3 cut(s) 11, 83, 602
Sse9I AATT 3 cut(s) 594, 608, 643
SsiI CCGC 6 cut(s) 158, 464, 467, 478, 525, 731
SspI AATATT 1 cut(s) 230
SspMI CTAG 2 cut(s) 657, 717
StyD4I CCNGG 2 cut(s) 501, 701
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 1 cut(s) 485
TaqI TCGA 1 cut(s) 583
TasI AATT 3 cut(s) 594, 608, 643
TatI WGTACW 1 cut(s) 710
TauI GCSGC 1 cut(s) 469
Tru1I TTAA 2 cut(s) 110, 593
Tru9I TTAA 2 cut(s) 110, 593
TscAI CASTG 4 cut(s) 183, 219, 352, 730
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 269, 363
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 119, 364, 461, 759
TspGWI ACGGA 2 cut(s) 201, 212
TspRI CASTG 4 cut(s) 183, 219, 352, 730
XceI RCATGY 1 cut(s) 742
XspI CTAG 2 cut(s) 657, 717
ZrmI AGTACT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.