Rh6AG015400
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003904
Physical Location & Seq
Forward (+)
1577048 .. 1578065
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG015400.1

Sequence Viewer

Length: 738 bp
ATGGCAGATCTTGAGGGTCAAAAGATTAGAAAGACCAAGATCAGCTTCAAACTCATCGTCTTAGATATTCTCCTCGTCATACTTGAGAGGCTTACAATGTGGCTTTTGTTAAGCTATCCCAGCTTTGTTCATTTTTTCTGTTCCACAGGCTTCACTCCGCTGAGATTACATATTTCAGTGTCGTACGGATATCTTACGGAGGATCCTACATCAGTGCAGGCGCTGGGAGAATATTATCTTTTATTGTTGATTGAGCGATTTGTGAGCTTTGCTGCTATATACTTGTACTGGCCTTCAAATTTTTGGTGTATAGTGGTCGTTTCCTGTAGCGCCATATCCACTATATGCAGTGCAACCATTGCTCGCGGCACATATTTCATGTCTTCAGAAAATCGGAAAGAGAAACAGAAAAAGAAAGACTACGGATCCTCCTCTCCTAATCCGGACTCTCCTCCCAGCTACGACCCACCGCTTCACGTCCGCGACGGTGACCTGTCTGACGACCCGGCCCATGCCTCCTCCTCCTCCGCCAATCGCCGTGGAGATCGTCAAAAAAGAGTGATCCCATGGGCAGAAGAGGAGCATCGAATGTTCTTAATTGGTCTTGAGAAATTGGGGAAAGGAGACTGGCGTGGGATAGCGGGAAATTATGTAAAGACTAGGACTCCTACTCAGGTGGCAAGCCATGCCCACAGGTATTTTACCCGGCAGAGTACTTCTAGCTCAGTGATCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

245

Amino Acids

27.83

Weight (kDa)

9.21

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 189 - 233 6.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 366, 483
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 6 cut(s) 158, 366, 470, 481, 528, 641
AclWI GGATC 6 cut(s) 197, 210, 420, 433, 556, 724
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 185, 287, 715
AgsI TTSAA 2 cut(s) 49, 297
AjiI CACGTC 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 6 cut(s) 45, 114, 123, 267, 459, 723
AluI AGCT 6 cut(s) 45, 114, 123, 267, 459, 723
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 6 cut(s) 197, 210, 420, 433, 556, 724
AlwNI CAGNNNCTG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 2 cut(s) 290, 507
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 2 cut(s) 223, 332
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 506, 706
AsuHPI GGTGA 1 cut(s) 500
BamHI GGATCC 2 cut(s) 202, 425
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 522
BcnI CCSGG 2 cut(s) 506, 706
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 660, 720
BfmI CTRYAG 1 cut(s) 325
BfoI RGCGCY 2 cut(s) 224, 333
BglII AGATCT 1 cut(s) 7
BisI GCNGC 2 cut(s) 273, 367
BlsI GCNGC 2 cut(s) 274, 368
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 2 cut(s) 506, 706
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 2 cut(s) 204, 427
BmrFI CCNGG 2 cut(s) 506, 706
BmsI GCATC 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 32, 104, 626
BpuMI CCSGG 2 cut(s) 506, 706
BsaJI CCNNGG 2 cut(s) 538, 566
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 649, 679
Bse1I ACTGG 2 cut(s) 293, 632
Bse3DI GCAATG 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 538, 566
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 3 cut(s) 152, 686, 738
BseNI ACTGG 2 cut(s) 293, 632
BseRI GAGGAG 7 cut(s) 62, 421, 441, 508, 511, 514, 593
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 3 cut(s) 119, 223, 455
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 366, 483
BshFI GGCC 2 cut(s) 292, 509
BsiSI CCGG 3 cut(s) 443, 506, 706
BsiWI CGTACG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 618
BsnI GGCC 2 cut(s) 292, 509
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
Bsp19I CCATGG 1 cut(s) 566
BspACI CCGC 6 cut(s) 158, 366, 470, 481, 528, 641
BspANI GGCC 2 cut(s) 292, 509
BspCNI CTCAG 3 cut(s) 153, 685, 737
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 2 cut(s) 366, 483
BspLI GGNNCC 2 cut(s) 204, 427
BspPI GGATC 6 cut(s) 197, 210, 420, 433, 556, 724
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 2 cut(s) 293, 632
BssECI CCNNGG 2 cut(s) 538, 566
BssMI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
BssT1I CCWWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 570
BstAPI GCANNNNNTGC 2 cut(s) 359, 686
BstC8I GCNNGC 3 cut(s) 219, 364, 682
BstDEI CTNAG 4 cut(s) 61, 161, 672, 724
BstDSI CCRYGG 2 cut(s) 538, 566
BstEII GGTNACC 1 cut(s) 488
BstFNI CGCG 2 cut(s) 366, 483
BstH2I RGCGCY 2 cut(s) 224, 333
BstHHI GCGC 2 cut(s) 223, 332
BstKTI GATC 7 cut(s) 10, 42, 205, 428, 547, 564, 732
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
BstMWI GCNNNNNNNGC 3 cut(s) 120, 359, 686
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 504, 704
BstSFI CTRYAG 1 cut(s) 325
BstUI CGCG 2 cut(s) 366, 483
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 3 cut(s) 7, 202, 425
BstYI RGATCY 3 cut(s) 7, 202, 425
BsuRI GGCC 2 cut(s) 292, 509
BtgI CCRYGG 2 cut(s) 538, 566
BtrI CACGTC 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 4 cut(s) 183, 219, 355, 732
Cac8I GCNNGC 3 cut(s) 219, 364, 682
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 2 cut(s) 223, 332
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 3 cut(s) 184, 286, 714
CspCI CAANNNNNGTGG 2 cut(s) 520, 555
CviAII CATG 4 cut(s) 379, 512, 567, 686
CviQI GTAC 3 cut(s) 184, 286, 714
DdeI CTNAG 4 cut(s) 61, 161, 672, 724
DpnI GATC 7 cut(s) 9, 41, 204, 427, 546, 563, 731
DpnII GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 566
Eco32I GATATC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 488
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 4 cut(s) 382, 515, 570, 689
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 4 cut(s) 378, 511, 566, 685
FauI CCCGC 1 cut(s) 634
Fnu4HI GCNGC 2 cut(s) 273, 367
Fsp4HI GCNGC 2 cut(s) 273, 367
FspBI CTAG 2 cut(s) 660, 720
GlaI GCGC 2 cut(s) 222, 331
GluI GCNGC 2 cut(s) 273, 367
GsaI CCCAGC 3 cut(s) 123, 227, 459
HaeII RGCGCY 2 cut(s) 224, 333
HaeIII GGCC 2 cut(s) 292, 509
HapII CCGG 3 cut(s) 443, 506, 706
HhaI GCGC 2 cut(s) 223, 332
Hin1II CATG 4 cut(s) 382, 515, 570, 689
Hin6I GCGC 2 cut(s) 221, 330
HinP1I GCGC 2 cut(s) 221, 330
HinfI GANTC 2 cut(s) 446, 664
HpaII CCGG 3 cut(s) 443, 506, 706
HphI GGTGA 1 cut(s) 500
Hpy188I TCNGA 4 cut(s) 388, 396, 499, 734
Hpy188III TCNNGA 3 cut(s) 11, 443, 605
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 217, 348, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 359, 686
HpyF3I CTNAG 4 cut(s) 61, 161, 672, 724
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 4 cut(s) 382, 515, 570, 689
HspAI GCGC 2 cut(s) 221, 330
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
LmnI GCTCC 1 cut(s) 580
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 592
MaeI CTAG 2 cut(s) 660, 720
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 488
MalI GATC 7 cut(s) 9, 41, 204, 427, 546, 563, 731
MboI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
MboII GAAGA 2 cut(s) 375, 587
MflI RGATCY 3 cut(s) 7, 202, 425
MluCI AATT 4 cut(s) 298, 597, 611, 646
MlyI GAGTC 2 cut(s) 440, 658
MroI TCCGGA 1 cut(s) 442
MseI TTAA 2 cut(s) 110, 596
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 3 cut(s) 443, 506, 706
MspR9I CCNGG 2 cut(s) 506, 706
MvnI CGCG 2 cut(s) 366, 483
MwoI GCNNNNNNNGC 3 cut(s) 120, 359, 686
NciI CCSGG 2 cut(s) 506, 706
NcoI CCATGG 1 cut(s) 566
NdeII GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
NlaIII CATG 4 cut(s) 382, 515, 570, 689
NlaIV GGNNCC 2 cut(s) 204, 427
NmuCI GTSAC 1 cut(s) 488
Pfl23II CGTACG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 274, 368
PleI GAGTC 2 cut(s) 440, 658
PpsI GAGTC 2 cut(s) 440, 658
PspEI GGTNACC 1 cut(s) 488
PspFI CCCAGC 3 cut(s) 119, 223, 455
PspLI CGTACG 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 204, 427
PspPI GGNCC 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 3 cut(s) 7, 202, 425
RsaI GTAC 3 cut(s) 185, 287, 715
RsaNI GTAC 3 cut(s) 184, 286, 714
SaqAI TTAA 2 cut(s) 110, 596
SatI GCNGC 2 cut(s) 273, 367
Sau3AI GATC 7 cut(s) 7, 39, 202, 425, 544, 561, 729
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 2 cut(s) 440, 658
ScrFI CCNGG 2 cut(s) 506, 706
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 1 cut(s) 325
SmlI CTYRAG 3 cut(s) 11, 83, 605
SmoI CTYRAG 3 cut(s) 11, 83, 605
Sse9I AATT 4 cut(s) 298, 597, 611, 646
SsiI CCGC 6 cut(s) 158, 366, 470, 481, 528, 641
SspI AATATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 660, 720
StyD4I CCNGG 2 cut(s) 504, 704
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 586
TasI AATT 4 cut(s) 298, 597, 611, 646
TatI WGTACW 2 cut(s) 285, 713
TauI GCSGC 1 cut(s) 369
Tru1I TTAA 2 cut(s) 110, 596
Tru9I TTAA 2 cut(s) 110, 596
TscAI CASTG 4 cut(s) 183, 219, 355, 732
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 2 cut(s) 119, 367
TspGWI ACGGA 3 cut(s) 201, 212, 438
TspRI CASTG 4 cut(s) 183, 219, 355, 732
XapI RAATTY 1 cut(s) 298
XspI CTAG 2 cut(s) 660, 720
ZrmI AGTACT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.