pycom06g16230
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003904
Physical Location & Seq
Forward (+)
20596393 .. 20598129
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16230.1

Sequence Viewer

Length: 903 bp
ATGTCGTCCGGCACGTGCTCCACCGTCGAGCCCGCGGGCGCCGGAGAATTCATGCTGTTCGGCGTGCGCGTGGTGGTCGATTCCATGAGGAAGAGCGTCAGTTTGAACAATCTCTCGCAGTACGAGCAGCCTCAGGAGGCCGCCTCCAACAACGGCAATAACGGCACCGCCGCCGGAAAGGATGACGCGGCGCCCGGTTACACTTCCGAGAACGACGTCGTCCACAATTCTGGCGCGAATCGCGAGCGCGAACGCAAGCGAGGGGTTCCATGGACGGAGGAAGAGCACAAGCTTTTCTTGCTTGGATTGCAGAAAGTAGGGAAAGGAGATTGGAGAGGGATCTCAAGAAACTTCGTGAAGACTCGCACCCCGACTCAGGTTGCCAGCCACGCACAGAAGTACTTTCTGCGCCGGAACAACCACAATCGCCGGCGCCGCAGATCTAGCCTCTTTGACATCACCACCGATACGGTCTCTCCAACTCCAATGGATGAAGAGCAAGTACATCTTCAAGATATCGCATCTCAGTCGCATCCATTGCCTCCTCCGCCACTATCCGACCCTCGCAACGCCAGTGGATTTCCAATGGTGCCAAATTTTCCAATGACTGTAGGTCCAGCTGTCTTGCCAGTTCCCATTGAGAATCCTACGGAAAATCTAGCTCTACGACAAGCAAATCACGAGAATAGTGCTTCGGCTAAGCTCGTCCGTCCAGTTGCCCTTCATTCGGCCCCTCATGCCACCGCAATGTCTGATCTAAACTCGACCTCAACAACGGACACATCAACTCTCACTCTCAACCTCTCCTTGTCAATGGACCCAAGGGAACCGTCATCAAGGCATTCGGCTTTCCAGACAATGTCCGGATTCAGCAATGGGGATGGCGTGATCAGCGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

301

Amino Acids

32.58

Weight (kDa)

7.18

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 89 - 135 1.7e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccB1I GGYRCC 5 cut(s) 38, 164, 190, 432, 589
AccII CGCG 6 cut(s) 35, 69, 188, 236, 243, 249
AccIII TCCGGA 1 cut(s) 863
AciI CCGC 9 cut(s) 33, 35, 141, 168, 171, 188, 436, 548, 744
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 2 cut(s) 47, 595
AcvI CACGTG 1 cut(s) 15
AcyI GRCGYC 4 cut(s) 39, 191, 216, 433
AfaI GTAC 3 cut(s) 122, 401, 504
AfiI CCNNNNNNNGG 2 cut(s) 376, 727
AgsI TTSAA 2 cut(s) 106, 512
AhdI GACNNNNNGTC 1 cut(s) 612
AluBI AGCT 4 cut(s) 292, 620, 662, 703
AluI AGCT 4 cut(s) 292, 620, 662, 703
Alw21I GWGCWC 2 cut(s) 20, 288
Alw26I GTCTC 1 cut(s) 478
AlwI GGATC 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 863
AoxI GGCC 2 cut(s) 138, 729
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 47, 595
AspLEI GCGC 7 cut(s) 41, 69, 193, 236, 249, 411, 435
AspS9I GGNCC 3 cut(s) 614, 730, 817
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 2 cut(s) 614, 817
AxyI CCTNAGG 1 cut(s) 132
BanI GGYRCC 5 cut(s) 38, 164, 190, 432, 589
BanII GRGCYC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BauI CACGAG 1 cut(s) 680
BbrPI CACGTG 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 20, 288
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 875
BceAI ACGGC 2 cut(s) 169, 178
BcgI CGANNNNNNTGC 4 cut(s) 510, 544, 671, 705
BclI TGATCA 1 cut(s) 888
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 2 cut(s) 444, 659
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 3 cut(s) 42, 194, 436
BglII AGATCT 1 cut(s) 440
BisI GCNGC 5 cut(s) 128, 141, 171, 189, 436
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 5 cut(s) 129, 142, 172, 190, 437
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 2 cut(s) 614, 817
BmeRI GACNNNNNGTC 1 cut(s) 612
BmgT120I GGNCC 3 cut(s) 614, 730, 817
BmiI GGNNCC 9 cut(s) 40, 166, 192, 267, 434, 591, 732, 819, 828
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 2 cut(s) 530, 541
BpiI GAAGAC 1 cut(s) 365
BplI GAGNNNNNCTC 2 cut(s) 128, 160
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 15
BsaHI GRCGYC 4 cut(s) 39, 191, 216, 433
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 3 cut(s) 33, 269, 821
BsaWI WCCGGW 1 cut(s) 863
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 376, 727
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 3 cut(s) 573, 629, 713
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 3 cut(s) 536, 753, 880
BseAI TCCGGA 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 33, 269, 821
BseGI GGATG 4 cut(s) 187, 496, 532, 886
BseLI CCNNNNNNNGG 2 cut(s) 376, 727
BseMI GCAATG 3 cut(s) 536, 753, 880
BseMII CTCAG 3 cut(s) 146, 389, 539
BseNI ACTGG 3 cut(s) 573, 629, 713
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 6 cut(s) 35, 69, 188, 236, 243, 249
BshFI GGCC 2 cut(s) 140, 731
BshNI GGYRCC 5 cut(s) 38, 164, 190, 432, 589
BsiHKAI GWGCWC 2 cut(s) 20, 288
BsiSI CCGG 7 cut(s) 9, 42, 174, 195, 412, 430, 864
BslI CCNNNNNNNGG 2 cut(s) 376, 727
BsmAI GTCTC 1 cut(s) 478
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 2 cut(s) 140, 731
Bso31I GGTCTC 1 cut(s) 478
Bsp1286I GDGCHC 3 cut(s) 20, 33, 288
Bsp13I TCCGGA 1 cut(s) 863
Bsp143I GATC 4 cut(s) 339, 440, 754, 888
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp19I CCATGG 1 cut(s) 269
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 9 cut(s) 33, 35, 141, 168, 171, 188, 436, 548, 744
BspANI GGCC 2 cut(s) 140, 731
BspCNI CTCAG 3 cut(s) 145, 388, 538
BspEI TCCGGA 1 cut(s) 863
BspFNI CGCG 6 cut(s) 35, 69, 188, 236, 243, 249
BspLI GGNNCC 9 cut(s) 40, 166, 192, 267, 434, 591, 732, 819, 828
BspPI GGATC 1 cut(s) 347
BspQI GCTCTTC 3 cut(s) 86, 276, 489
BspT107I GGYRCC 5 cut(s) 38, 164, 190, 432, 589
BspTNI GGTCTC 1 cut(s) 478
BsrDI GCAATG 3 cut(s) 536, 753, 880
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 3 cut(s) 573, 629, 713
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 3 cut(s) 33, 269, 821
BssMI GATC 4 cut(s) 339, 440, 754, 888
BssNI GRCGYC 4 cut(s) 39, 191, 216, 433
BssSI CACGAG 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 269, 821
Bst2BI CACGAG 1 cut(s) 680
Bst4CI ACNGT 4 cut(s) 25, 472, 610, 831
Bst6I CTCTTC 3 cut(s) 86, 276, 489
BstACI GRCGYC 4 cut(s) 39, 191, 216, 433
BstAPI GCANNNNNTGC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 7 cut(s) 33, 37, 65, 245, 257, 385, 431
BstDEI CTNAG 4 cut(s) 132, 375, 525, 699
BstDSI CCRYGG 2 cut(s) 33, 269
BstF5I GGATG 4 cut(s) 187, 496, 532, 886
BstFNI CGCG 6 cut(s) 35, 69, 188, 236, 243, 249
BstH2I RGCGCY 3 cut(s) 42, 194, 436
BstHHI GCGC 7 cut(s) 41, 69, 193, 236, 249, 411, 435
BstKTI GATC 4 cut(s) 342, 443, 757, 891
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 4 cut(s) 339, 440, 754, 888
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 6 cut(s) 35, 69, 188, 236, 243, 249
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 339, 440
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 2 cut(s) 339, 440
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 140, 731
BtgI CCRYGG 2 cut(s) 33, 269
BtsCI GGATG 4 cut(s) 187, 496, 532, 886
BtsIMutI CAGTG 1 cut(s) 580
BtuMI TCGCGA 1 cut(s) 243
Cac8I GCNNGC 7 cut(s) 33, 37, 65, 245, 257, 385, 431
CfoI GCGC 7 cut(s) 41, 69, 193, 236, 249, 411, 435
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 3 cut(s) 614, 730, 817
Cfr42I CCGCGG 1 cut(s) 36
CseI GACGC 3 cut(s) 85, 194, 883
Csp6I GTAC 3 cut(s) 121, 400, 503
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 4 cut(s) 52, 85, 270, 737
CviQI GTAC 3 cut(s) 121, 400, 503
DdeI CTNAG 4 cut(s) 132, 375, 525, 699
DinI GGCGCC 3 cut(s) 40, 192, 434
DpnI GATC 4 cut(s) 341, 442, 756, 890
DpnII GATC 4 cut(s) 339, 440, 754, 888
DriI GACNNNNNGTC 1 cut(s) 612
Eam1104I CTCTTC 3 cut(s) 86, 276, 489
Eam1105I GACNNNNNGTC 1 cut(s) 612
EarI CTCTTC 3 cut(s) 86, 276, 489
EciI GGCGGA 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 269, 821
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 2 cut(s) 614, 817
Eco72I CACGTG 1 cut(s) 15
Eco81I CCTNAGG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 47
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 269, 821
EcoT38I GRGCYC 1 cut(s) 33
EgeI GGCGCC 3 cut(s) 40, 192, 434
EheI GGCGCC 3 cut(s) 40, 192, 434
ErhI CCWWGG 2 cut(s) 269, 821
FaeI CATG 4 cut(s) 55, 88, 273, 740
FaiI YATR 4 cut(s) 53, 86, 271, 738
FalI AAGNNNNNCTT 4 cut(s) 281, 313, 492, 524
FatI CATG 4 cut(s) 51, 84, 269, 736
FauI CCCGC 2 cut(s) 28, 40
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 5 cut(s) 128, 141, 171, 189, 436
FokI GGATG 4 cut(s) 194, 503, 519, 893
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 5 cut(s) 128, 141, 171, 189, 436
FspBI CTAG 2 cut(s) 444, 659
GlaI GCGC 7 cut(s) 40, 68, 192, 235, 248, 410, 434
GluI GCNGC 5 cut(s) 128, 141, 171, 189, 436
HaeII RGCGCY 3 cut(s) 42, 194, 436
HaeIII GGCC 2 cut(s) 140, 731
HapII CCGG 7 cut(s) 9, 42, 174, 195, 412, 430, 864
HgaI GACGC 3 cut(s) 85, 194, 883
HhaI GCGC 7 cut(s) 41, 69, 193, 236, 249, 411, 435
Hin1I GRCGYC 4 cut(s) 39, 191, 216, 433
Hin1II CATG 4 cut(s) 55, 88, 273, 740
Hin6I GCGC 7 cut(s) 39, 67, 191, 234, 247, 409, 433
HinP1I GCGC 7 cut(s) 39, 67, 191, 234, 247, 409, 433
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 6 cut(s) 80, 238, 361, 373, 643, 867
HpaII CCGG 7 cut(s) 9, 42, 174, 195, 412, 430, 864
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 208, 559, 754
Hpy188III TCNNGA 8 cut(s) 134, 242, 345, 355, 512, 680, 853, 864
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 4 cut(s) 29, 218, 221, 899
HpyAV CCTTC 1 cut(s) 731
HpyCH4III ACNGT 4 cut(s) 25, 472, 610, 831
HpyCH4IV ACGT 2 cut(s) 14, 216
HpyCH4V TGCA 1 cut(s) 310
HpyF3I CTNAG 4 cut(s) 132, 375, 525, 699
HpySE526I ACGT 2 cut(s) 14, 216
Hsp92I GRCGYC 4 cut(s) 39, 191, 216, 433
Hsp92II CATG 4 cut(s) 55, 88, 273, 740
HspAI GCGC 7 cut(s) 39, 67, 191, 234, 247, 409, 433
KasI GGCGCC 3 cut(s) 38, 190, 432
Kpn2I TCCGGA 1 cut(s) 863
KroI GCCGGC 1 cut(s) 429
KroNI GCCGGC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 888
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 4 cut(s) 339, 440, 754, 888
LguI GCTCTTC 3 cut(s) 86, 276, 489
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 530, 541
MaeI CTAG 2 cut(s) 444, 659
MaeII ACGT 2 cut(s) 14, 216
MaeIII GTNAC 1 cut(s) 197
MalI GATC 4 cut(s) 341, 442, 756, 890
MboI GATC 4 cut(s) 339, 440, 754, 888
MboII GAAGA 5 cut(s) 103, 293, 370, 500, 506
MflI RGATCY 2 cut(s) 339, 440
MhlI GDGCHC 3 cut(s) 20, 33, 288
MluCI AATT 3 cut(s) 47, 226, 595
Mly113I GGCGCC 3 cut(s) 39, 191, 433
MlyI GAGTC 2 cut(s) 355, 367
MmeI TCCRAC 3 cut(s) 171, 503, 582
MreI CGCCGGCG 1 cut(s) 429
MroI TCCGGA 1 cut(s) 863
MroNI GCCGGC 1 cut(s) 429
MseI TTAA 1 cut(s) 901
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 2 cut(s) 35, 620
MspI CCGG 7 cut(s) 9, 42, 174, 195, 412, 430, 864
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 841
MvnI CGCG 6 cut(s) 35, 69, 188, 236, 243, 249
NaeI GCCGGC 1 cut(s) 431
NarI GGCGCC 3 cut(s) 39, 191, 433
NciI CCSGG 1 cut(s) 195
NcoI CCATGG 1 cut(s) 269
NdeII GATC 4 cut(s) 339, 440, 754, 888
NgoMIV GCCGGC 1 cut(s) 429
NlaIII CATG 4 cut(s) 55, 88, 273, 740
NlaIV GGNNCC 9 cut(s) 40, 166, 192, 267, 434, 591, 732, 819, 828
NruI TCGCGA 1 cut(s) 243
PciSI GCTCTTC 3 cut(s) 86, 276, 489
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 66
PctI GAATGC 1 cut(s) 841
PdiI GCCGGC 1 cut(s) 431
PfeI GAWTC 4 cut(s) 80, 238, 643, 867
PflFI GACNNNGTC 2 cut(s) 218, 859
PkrI GCNGC 5 cut(s) 129, 142, 172, 190, 437
PleI GAGTC 2 cut(s) 355, 367
PluTI GGCGCC 3 cut(s) 42, 194, 436
PmaCI CACGTG 1 cut(s) 15
PmlI CACGTG 1 cut(s) 15
PpsI GAGTC 2 cut(s) 355, 367
Ppu21I YACGTR 1 cut(s) 15
PspCI CACGTG 1 cut(s) 15
PspN4I GGNNCC 9 cut(s) 40, 166, 192, 267, 434, 591, 732, 819, 828
PspPI GGNCC 3 cut(s) 614, 730, 817
PsuI RGATCY 2 cut(s) 339, 440
PsyI GACNNNGTC 2 cut(s) 218, 859
PvuII CAGCTG 1 cut(s) 620
RruI TCGCGA 1 cut(s) 243
RsaI GTAC 3 cut(s) 122, 401, 504
RsaNI GTAC 3 cut(s) 121, 400, 503
RseI CAYNNNNRTG 1 cut(s) 746
SacII CCGCGG 1 cut(s) 36
SapI GCTCTTC 3 cut(s) 86, 276, 489
SaqAI TTAA 1 cut(s) 901
SatI GCNGC 5 cut(s) 128, 141, 171, 189, 436
Sau3AI GATC 4 cut(s) 339, 440, 754, 888
Sau96I GGNCC 3 cut(s) 614, 730, 817
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 2 cut(s) 355, 367
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 3 cut(s) 20, 33, 288
SfaNI GCATC 2 cut(s) 530, 541
SfcI CTRYAG 1 cut(s) 609
SfoI GGCGCC 3 cut(s) 40, 192, 434
Sfr303I CCGCGG 1 cut(s) 36
SgrAI CRCCGGYG 1 cut(s) 429
SgrBI CCGCGG 1 cut(s) 36
SinI GGWCC 2 cut(s) 614, 817
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 47, 226, 595
SsiI CCGC 9 cut(s) 33, 35, 141, 168, 171, 188, 436, 548, 744
SspDI GGCGCC 3 cut(s) 38, 190, 432
SspMI CTAG 2 cut(s) 444, 659
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 2 cut(s) 269, 821
TaaI ACNGT 4 cut(s) 25, 472, 610, 831
TaiI ACGT 2 cut(s) 17, 219
TaqI TCGA 3 cut(s) 27, 78, 764
TasI AATT 3 cut(s) 47, 226, 595
TatI WGTACW 2 cut(s) 399, 502
TauI GCSGC 4 cut(s) 143, 173, 191, 438
TfiI GAWTC 4 cut(s) 80, 238, 643, 867
Tru1I TTAA 1 cut(s) 901
Tru9I TTAA 1 cut(s) 901
TscAI CASTG 1 cut(s) 580
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 40, 507, 713
TspGWI ACGGA 4 cut(s) 290, 665, 698, 791
TspRI CASTG 1 cut(s) 580
Tth111I GACNNNGTC 2 cut(s) 218, 859
VpaK11BI GGWCC 2 cut(s) 614, 817
XapI RAATTY 2 cut(s) 47, 595
XspI CTAG 2 cut(s) 444, 659
ZraI GACGTC 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.