Rroxscaffold_3G00273260
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003904
Physical Location & Seq
Reverse (-)
65100072 .. 65102178
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273260.1

Sequence Viewer

Length: 915 bp
ATGTCCTCCGGCACCTGCTCCACCACCGTCGATCCCGCCGCCGGCGTGGCCAAAGAGTTCATGCTGTTCGGCGTGCGCGTGGTGGTTGACTCCATGAGGAAGAGCGTCAGTCTCAACAATCTCTCGCAGTACGAACACCCTACCGAGGCCTCCAACAACAACAATAACAGCTCCGGCGCCGGCGCCGGCAAGGACGACGCCGTCGCTGGTTACGTGTCTGAGAACGACGTCGTTCACAATTCTGGCGGGAATCGCGAGCGCGAACGCAAGCGAGGAGTTCCGTGGACGGAGGACGAGCACAAGCTATTTCTGCTTGGATTGCAGAAAGTAGGGAAAGGAGATTGGAGAGGGATCTCCAGGAACTATGTCAAGACTCGCACGCCGACTCAGGTGGCCAGCCATGCTCAGAAGTACTTTCTCCGCCGGAGCAACCACAATCGCCGCCGCCGCAGATCTAGCCTATTTGATATCACCACCGATTCGGTCCCTGCAACTCCAATGGAAGAAGAGCAAGTACATCATCAAGATAACACATCTCACCTGCACTCGTTGCCACCACCTCCACCACAATCCGAATCTTGCAATCCTAATGGATTTTCGATGGTGCCAATTTTTCTAATGAACGTAGGTCCAGCTGTTGTACAAATCCCCACTAAGAAACCAACAGGAAATCTTACACTGGGACAAGGAAATCCGGGGTGTCCTTCCCCTAAGATTGTCCATCCAGTTGCTCTGCACTCGGCCCCTCATGCTACAGAAGCATCTGATCTAAACTTGAATGCGACAATTGACACAGCGCCTCTAGCTCTCAACCTCTCCTTGTCAATGAACTCGAGGGAATCATCGTCAAGGCATTCGGCTTTCCAAGCAATGTCAAGCTTTGGCAATGGGGACAACATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

32.87

Weight (kDa)

8.78

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 93 - 139 5.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 23, 549
AasI GACNNNNNNGTC 1 cut(s) 200
AatII GACGTC 1 cut(s) 231
Acc36I ACCTGC 2 cut(s) 23, 549
AccB1I GGYRCC 4 cut(s) 11, 176, 182, 604
AccII CGCG 3 cut(s) 78, 255, 261
AciI CCGC 7 cut(s) 36, 39, 246, 421, 442, 445, 448
AclWI GGATC 2 cut(s) 26, 359
AcoI YGGCCR 2 cut(s) 48, 393
AcyI GRCGYC 4 cut(s) 177, 183, 198, 228
AfaI GTAC 4 cut(s) 131, 413, 516, 642
AfiI CCNNNNNNNGG 2 cut(s) 41, 145
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 1 cut(s) 778
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 5 cut(s) 171, 304, 635, 806, 879
AluI AGCT 5 cut(s) 171, 304, 635, 806, 879
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 26, 359
Ama87I CYCGRG 1 cut(s) 832
AoxI GGCC 4 cut(s) 48, 147, 393, 741
AspLEI GCGC 5 cut(s) 78, 179, 185, 261, 799
AspS9I GGNCC 3 cut(s) 484, 629, 742
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 2 cut(s) 463, 530
AvaI CYCGRG 1 cut(s) 832
AvaII GGWCC 2 cut(s) 484, 629
BalI TGGCCA 2 cut(s) 50, 395
BanI GGYRCC 4 cut(s) 11, 176, 182, 604
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
Bbv12I GWGCWC 1 cut(s) 300
BccI CCATC 2 cut(s) 595, 729
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 358
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 456, 803
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 3 cut(s) 180, 186, 800
BfuAI ACCTGC 2 cut(s) 23, 549
BglI GCCNNNNNGGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 452
BisI GCNGC 4 cut(s) 39, 442, 445, 448
BlsI GCNGC 4 cut(s) 40, 443, 446, 449
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 2 cut(s) 358, 696
Bme18I GGWCC 2 cut(s) 484, 629
BmeT110I CYCGRG 1 cut(s) 832
BmgT120I GGNCC 3 cut(s) 484, 629, 742
BmiI GGNNCC 6 cut(s) 13, 178, 184, 486, 606, 744
BmrFI CCNGG 2 cut(s) 358, 696
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 1 cut(s) 770
BmuI ACTGGG 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 696
BsaAI YACGTR 1 cut(s) 214
BsaHI GRCGYC 4 cut(s) 177, 183, 198, 228
BsaJI CCNNGG 3 cut(s) 144, 281, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 145
Bse118I RCCGGY 3 cut(s) 41, 179, 185
Bse1I ACTGG 2 cut(s) 684, 725
Bse3DI GCAATG 2 cut(s) 876, 892
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 3 cut(s) 144, 281, 695
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 41, 145
BseMI GCAATG 2 cut(s) 876, 892
BseMII CTCAG 3 cut(s) 210, 401, 419
BseNI ACTGG 2 cut(s) 684, 725
BseRI GAGGAG 1 cut(s) 288
BsgI GTGCAG 2 cut(s) 527, 719
Bsh1236I CGCG 3 cut(s) 78, 255, 261
BshFI GGCC 4 cut(s) 50, 149, 395, 743
BshNI GGYRCC 4 cut(s) 11, 176, 182, 604
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 832
BsiSI CCGG 7 cut(s) 9, 42, 174, 180, 186, 424, 695
BslFI GGGAC 3 cut(s) 470, 696, 905
BslI CCNNNNNNNGG 2 cut(s) 41, 145
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 3 cut(s) 470, 696, 905
BsmI GAATGC 2 cut(s) 784, 853
BsnI GGCC 4 cut(s) 50, 149, 395, 743
BsoBI CYCGRG 1 cut(s) 832
Bsp1286I GDGCHC 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 4 cut(s) 31, 351, 452, 766
Bsp68I TCGCGA 1 cut(s) 255
BspACI CCGC 7 cut(s) 36, 39, 246, 421, 442, 445, 448
BspANI GGCC 4 cut(s) 50, 149, 395, 743
BspCNI CTCAG 3 cut(s) 211, 400, 418
BspFNI CGCG 3 cut(s) 78, 255, 261
BspLI GGNNCC 6 cut(s) 13, 178, 184, 486, 606, 744
BspMI ACCTGC 2 cut(s) 23, 549
BspPI GGATC 2 cut(s) 26, 359
BspQI GCTCTTC 2 cut(s) 95, 501
BspT107I GGYRCC 4 cut(s) 11, 176, 182, 604
BsrDI GCAATG 2 cut(s) 876, 892
BsrFI RCCGGY 3 cut(s) 41, 179, 185
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 2 cut(s) 684, 725
BssAI RCCGGY 3 cut(s) 41, 179, 185
BssECI CCNNGG 3 cut(s) 144, 281, 695
BssMI GATC 4 cut(s) 31, 351, 452, 766
BssNI GRCGYC 4 cut(s) 177, 183, 198, 228
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 95, 501
BstACI GRCGYC 4 cut(s) 177, 183, 198, 228
BstAPI GCANNNNNTGC 1 cut(s) 550
BstAUI TGTACA 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 8 cut(s) 43, 74, 181, 187, 257, 269, 380, 397
BstDEI CTNAG 5 cut(s) 219, 387, 405, 654, 711
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 3 cut(s) 78, 255, 261
BstH2I RGCGCY 3 cut(s) 180, 186, 800
BstHHI GCGC 5 cut(s) 78, 179, 185, 261, 799
BstKTI GATC 4 cut(s) 34, 354, 455, 769
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 4 cut(s) 31, 351, 452, 766
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 356, 694
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 3 cut(s) 78, 255, 261
BstX2I RGATCY 2 cut(s) 351, 452
BstYI RGATCY 2 cut(s) 351, 452
BsuRI GGCC 4 cut(s) 50, 149, 395, 743
BtgI CCRYGG 1 cut(s) 281
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 677, 910
BtuMI TCGCGA 1 cut(s) 255
BveI ACCTGC 2 cut(s) 23, 549
Cac8I GCNNGC 8 cut(s) 43, 74, 181, 187, 257, 269, 380, 397
CfoI GCGC 5 cut(s) 78, 179, 185, 261, 799
Cfr10I RCCGGY 3 cut(s) 41, 179, 185
Cfr13I GGNCC 3 cut(s) 484, 629, 742
CseI GACGC 2 cut(s) 94, 206
Csp6I GTAC 4 cut(s) 130, 412, 515, 641
CviAII CATG 4 cut(s) 61, 94, 401, 749
CviQI GTAC 4 cut(s) 130, 412, 515, 641
DdeI CTNAG 5 cut(s) 219, 387, 405, 654, 711
DinI GGCGCC 2 cut(s) 178, 184
DpnI GATC 4 cut(s) 33, 353, 454, 768
DpnII GATC 4 cut(s) 31, 351, 452, 766
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 2 cut(s) 48, 393
Eam1104I CTCTTC 2 cut(s) 95, 501
EarI CTCTTC 2 cut(s) 95, 501
EciI GGCGGA 1 cut(s) 410
Eco147I AGGCCT 1 cut(s) 149
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 484, 629
Eco88I CYCGRG 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 469
EgeI GGCGCC 2 cut(s) 178, 184
EheI GGCGCC 2 cut(s) 178, 184
FaeI CATG 4 cut(s) 64, 97, 404, 752
FaiI YATR 5 cut(s) 62, 95, 366, 402, 750
FaqI GGGAC 3 cut(s) 470, 696, 905
FatI CATG 4 cut(s) 60, 93, 400, 748
FauI CCCGC 2 cut(s) 43, 239
Fnu4HI GCNGC 4 cut(s) 39, 442, 445, 448
FokI GGATG 1 cut(s) 708
Fsp4HI GCNGC 4 cut(s) 39, 442, 445, 448
FspBI CTAG 2 cut(s) 456, 803
GlaI GCGC 5 cut(s) 77, 178, 184, 260, 798
GluI GCNGC 4 cut(s) 39, 442, 445, 448
GsuI CTGGAG 1 cut(s) 340
HaeII RGCGCY 3 cut(s) 180, 186, 800
HaeIII GGCC 4 cut(s) 50, 149, 395, 743
HapII CCGG 7 cut(s) 9, 42, 174, 180, 186, 424, 695
HgaI GACGC 2 cut(s) 94, 206
HhaI GCGC 5 cut(s) 78, 179, 185, 261, 799
Hin1I GRCGYC 4 cut(s) 177, 183, 198, 228
Hin1II CATG 4 cut(s) 64, 97, 404, 752
Hin6I GCGC 5 cut(s) 76, 177, 183, 259, 797
HinP1I GCGC 5 cut(s) 76, 177, 183, 259, 797
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 7 cut(s) 89, 250, 373, 385, 479, 575, 839
HpaII CCGG 7 cut(s) 9, 42, 174, 180, 186, 424, 695
HphI GGTGA 2 cut(s) 463, 530
Hpy166II GTNNAC 3 cut(s) 88, 235, 285
Hpy188I TCNGA 4 cut(s) 220, 408, 574, 766
Hpy188III TCNNGA 3 cut(s) 254, 370, 524
Hpy8I GTNNAC 3 cut(s) 88, 235, 285
Hpy99I CGWCG 5 cut(s) 32, 200, 206, 230, 233
HpyAV CCTTC 1 cut(s) 714
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 3 cut(s) 213, 228, 624
HpyCH4V TGCA 5 cut(s) 322, 491, 544, 582, 736
HpyF3I CTNAG 5 cut(s) 219, 387, 405, 654, 711
HpySE526I ACGT 3 cut(s) 213, 228, 624
Hsp92I GRCGYC 4 cut(s) 177, 183, 198, 228
Hsp92II CATG 4 cut(s) 64, 97, 404, 752
HspAI GCGC 5 cut(s) 76, 177, 183, 259, 797
KasI GGCGCC 2 cut(s) 176, 182
KroI GCCGGC 3 cut(s) 41, 179, 185
KroNI GCCGGC 3 cut(s) 43, 181, 187
Kzo9I GATC 4 cut(s) 31, 351, 452, 766
LguI GCTCTTC 2 cut(s) 95, 501
LmnI GCTCC 3 cut(s) 23, 176, 426
LweI GCATC 1 cut(s) 770
MaeI CTAG 2 cut(s) 456, 803
MaeII ACGT 3 cut(s) 213, 228, 624
MaeIII GTNAC 1 cut(s) 209
MalI GATC 4 cut(s) 33, 353, 454, 768
MboI GATC 4 cut(s) 31, 351, 452, 766
MboII GAAGA 3 cut(s) 112, 515, 518
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 2 cut(s) 351, 452
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 2 cut(s) 50, 395
MluCI AATT 3 cut(s) 238, 609, 786
MluNI TGGCCA 2 cut(s) 50, 395
Mly113I GGCGCC 2 cut(s) 177, 183
MlyI GAGTC 3 cut(s) 83, 367, 379
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 2 cut(s) 50, 395
MreI CGCCGGCG 2 cut(s) 41, 179
MroNI GCCGGC 3 cut(s) 41, 179, 185
MscI TGGCCA 2 cut(s) 50, 395
Msp20I TGGCCA 2 cut(s) 50, 395
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 7 cut(s) 9, 42, 174, 180, 186, 424, 695
MspR9I CCNGG 2 cut(s) 358, 696
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 2 cut(s) 784, 853
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 3 cut(s) 78, 255, 261
NaeI GCCGGC 3 cut(s) 43, 181, 187
NarI GGCGCC 2 cut(s) 177, 183
NciI CCSGG 1 cut(s) 696
NdeII GATC 4 cut(s) 31, 351, 452, 766
NgoMIV GCCGGC 3 cut(s) 41, 179, 185
NlaIII CATG 4 cut(s) 64, 97, 404, 752
NlaIV GGNNCC 6 cut(s) 13, 178, 184, 486, 606, 744
NmeAIII GCCGAG 1 cut(s) 719
NruI TCGCGA 1 cut(s) 255
PaeR7I CTCGAG 1 cut(s) 832
PaqCI CACCTGC 2 cut(s) 23, 549
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 2 cut(s) 95, 501
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 210
PctI GAATGC 2 cut(s) 784, 853
PdiI GCCGGC 3 cut(s) 43, 181, 187
PfeI GAWTC 4 cut(s) 250, 479, 575, 839
PflFI GACNNNGTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 4 cut(s) 40, 443, 446, 449
PleI GAGTC 3 cut(s) 83, 367, 379
PluTI GGCGCC 2 cut(s) 180, 186
PpsI GAGTC 3 cut(s) 83, 367, 379
Ppu21I YACGTR 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 6 cut(s) 13, 178, 184, 486, 606, 744
PspPI GGNCC 3 cut(s) 484, 629, 742
PspXI VCTCGAGB 1 cut(s) 832
PsuI RGATCY 2 cut(s) 351, 452
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 635
RruI TCGCGA 1 cut(s) 255
RsaI GTAC 4 cut(s) 131, 413, 516, 642
RsaNI GTAC 4 cut(s) 130, 412, 515, 641
SapI GCTCTTC 2 cut(s) 95, 501
SatI GCNGC 4 cut(s) 39, 442, 445, 448
Sau3AI GATC 4 cut(s) 31, 351, 452, 766
Sau96I GGNCC 3 cut(s) 484, 629, 742
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 3 cut(s) 83, 367, 379
ScrFI CCNGG 2 cut(s) 358, 696
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 1 cut(s) 770
SfcI CTRYAG 1 cut(s) 753
SfoI GGCGCC 2 cut(s) 178, 184
Sfr274I CTCGAG 1 cut(s) 832
SgrAI CRCCGGYG 2 cut(s) 41, 179
SinI GGWCC 2 cut(s) 484, 629
SlaI CTCGAG 1 cut(s) 832
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 3 cut(s) 238, 609, 786
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 7 cut(s) 36, 39, 246, 421, 442, 445, 448
SspDI GGCGCC 2 cut(s) 176, 182
SspMI CTAG 2 cut(s) 456, 803
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 356, 694
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 3 cut(s) 216, 231, 627
TaqI TCGA 3 cut(s) 30, 599, 833
TaqII GACCGA 1 cut(s) 472
TasI AATT 3 cut(s) 238, 609, 786
TatI WGTACW 3 cut(s) 411, 514, 640
TauI GCSGC 4 cut(s) 41, 444, 447, 450
TfiI GAWTC 4 cut(s) 250, 479, 575, 839
TscAI CASTG 2 cut(s) 684, 910
TspDTI ATGAA 3 cut(s) 49, 635, 842
TspGWI ACGGA 2 cut(s) 270, 302
TspRI CASTG 2 cut(s) 684, 910
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 484, 629
XhoI CTCGAG 1 cut(s) 832
XspI CTAG 2 cut(s) 456, 803
ZraI GACGTC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.