FvH4_2g31190
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003904
Physical Location & Seq
Forward (+)
23976298 .. 23980744
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31190.t1

Sequence Viewer

Length: 594 bp
ATGGCCAGGAAATGCTCGAATTGCGGCAACATAGGTCACAATTCAAGGACTTGCCCTTCTCCGACGTCGCAGCTGAAACTGAAAGGGGTATCAGACATAGGCCCTATTCTTGATGATGATGATGATCAATTTTCTTCTTCGTCTCCTTTCTCAGCTTCTGAATTTACAAGGAAGATGATGGACTTGACATCTTTACCATCATCAGTTGGCTATTCTTGGACAGAATCTACACGCTTCATTAACAGCTGCACCTTGGCATTTGAGATGGAGAAAATATTACTGGAAAATAATCAAGGTATCGGCCATCAGGAGGACTCTGATCTCCAACCTCCATTAGCCCAACATAGAAACAAAAGTGTGCCATGGAGTGAGGAGGAGCACCGGAGGTTTCTTGAAGGGGTTGAAACGCTGGGTAAGGGTGACTGGAAAGGCATCTCTGAAAACTTTGTCACCACAAGAACTCGAAGCCAGGTCGCAAGTCATGCCCAAAACTATTTTCACAACCGTCAGAAAACCGCCGCCGCCGCACCAATGGCACCATCCACAAAAACCCCAACTTCCACAAGAGAACACGCCGATGATGTCCCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

198

Amino Acids

21.83

Weight (kDa)

5.97

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 5.6e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 535
AciI CCGC 5 cut(s) 24, 516, 519, 522, 525
AcoI YGGCCR 2 cut(s) 3, 301
AcsI RAATTY 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 3 cut(s) 45, 395, 404
AjnI CCWGG 2 cut(s) 5, 468
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 3 cut(s) 73, 155, 246
AluI AGCT 3 cut(s) 73, 155, 246
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 147
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 3 cut(s) 3, 100, 301
ApeKI GCWGC 2 cut(s) 70, 246
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 431, 442
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 82, 233
BccI CCATC 5 cut(s) 172, 205, 259, 312, 547
BciT130I CCWGG 2 cut(s) 7, 470
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 147
BisI GCNGC 6 cut(s) 25, 71, 247, 519, 522, 525
BlsI GCNGC 6 cut(s) 26, 72, 248, 520, 523, 526
Bme1390I CCNGG 2 cut(s) 7, 470
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 2 cut(s) 7, 470
BmsI GCATC 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 252, 362
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 285, 428
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 2 cut(s) 7, 470
BseDI CCNNGG 2 cut(s) 252, 362
BseGI GGATG 2 cut(s) 539, 587
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 285, 428
BseRI GAGGAG 2 cut(s) 386, 389
BseXI GCAGC 2 cut(s) 82, 233
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 3 cut(s) 5, 102, 303
BshNI GGYRCC 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 3 cut(s) 5, 102, 303
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 124, 319
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 5 cut(s) 24, 516, 519, 522, 525
BspANI GGCC 3 cut(s) 5, 102, 303
BspCNI CTCAG 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 535
BsrI ACTGG 2 cut(s) 285, 428
BssECI CCNNGG 2 cut(s) 252, 362
BssMI GATC 2 cut(s) 124, 319
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 2 cut(s) 252, 362
Bst2UI CCWGG 2 cut(s) 7, 470
Bst4CI ACNGT 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 539, 587
BstKTI GATC 2 cut(s) 127, 322
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 124, 319
BstMWI GCNNNNNNNGC 4 cut(s) 21, 482, 524, 533
BstNI CCWGG 2 cut(s) 7, 470
BstSCI CCNGG 2 cut(s) 5, 468
BstV1I GCAGC 2 cut(s) 82, 233
BsuRI GGCC 3 cut(s) 5, 102, 303
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 539, 587
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 2 cut(s) 363, 482
CviJI RGCY 9 cut(s) 5, 73, 102, 155, 210, 246, 303, 338, 468
CviKI_1 RGCY 9 cut(s) 5, 73, 102, 155, 210, 246, 303, 338, 468
DdeI CTNAG 1 cut(s) 151
DpnI GATC 2 cut(s) 126, 321
DpnII GATC 2 cut(s) 124, 319
EaeI YGGCCR 2 cut(s) 3, 301
Eco130I CCWWGG 2 cut(s) 252, 362
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 5, 468
EcoT14I CCWWGG 2 cut(s) 252, 362
ErhI CCWWGG 2 cut(s) 252, 362
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 366, 485
FaiI YATR 5 cut(s) 32, 98, 345, 364, 483
FaqI GGGAC 1 cut(s) 569
FatI CATG 2 cut(s) 362, 481
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 6 cut(s) 25, 71, 247, 519, 522, 525
FokI GGATG 2 cut(s) 526, 574
Fsp4HI GCNGC 6 cut(s) 25, 71, 247, 519, 522, 525
GluI GCNGC 6 cut(s) 25, 71, 247, 519, 522, 525
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 3 cut(s) 5, 102, 303
HapII CCGG 1 cut(s) 382
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 366, 485
HinfI GANTC 2 cut(s) 224, 314
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 431, 442
Hpy188I TCNGA 6 cut(s) 63, 94, 160, 319, 439, 510
Hpy188III TCNNGA 3 cut(s) 110, 308, 392
Hpy99I CGWCG 2 cut(s) 67, 70
HpyAV CCTTC 2 cut(s) 66, 389
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 482, 524, 533
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 366, 485
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 124, 319
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 8 cut(s) 19, 266, 293, 395, 395, 409, 455, 482
Lsp1109I GCAGC 2 cut(s) 82, 233
LweI GCATC 1 cut(s) 441
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 35, 419, 448
MalI GATC 2 cut(s) 126, 321
MboI GATC 2 cut(s) 124, 319
MboII GAAGA 3 cut(s) 126, 129, 184
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 19, 40, 128, 161
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 2 cut(s) 86, 349
MnlI CCTC 5 cut(s) 304, 339, 364, 367, 378
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 576
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 73, 246
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 7, 470
MvaI CCWGG 2 cut(s) 7, 470
MwoI GCNNNNNNNGC 4 cut(s) 21, 482, 524, 533
NcoI CCATGG 1 cut(s) 362
NdeII GATC 2 cut(s) 124, 319
NlaIII CATG 2 cut(s) 366, 485
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 3 cut(s) 35, 419, 448
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 6 cut(s) 26, 72, 248, 520, 523, 526
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 5, 468
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 2 cut(s) 5, 468
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 101
PstNI CAGNNNCTG 1 cut(s) 158
PvuII CAGCTG 2 cut(s) 73, 246
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 6 cut(s) 25, 71, 247, 519, 522, 525
Sau3AI GATC 2 cut(s) 124, 319
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 7, 470
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 576
Sse9I AATT 4 cut(s) 19, 40, 128, 161
SsiI CCGC 5 cut(s) 24, 516, 519, 522, 525
SspI AATATT 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 5, 468
StyI CCWWGG 2 cut(s) 252, 362
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 17, 463
TasI AATT 4 cut(s) 19, 40, 128, 161
TauI GCSGC 4 cut(s) 27, 521, 524, 527
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 3 cut(s) 35, 419, 448
TseI GCWGC 2 cut(s) 70, 246
Tsp45I GTSAC 3 cut(s) 35, 419, 448
TspDTI ATGAA 1 cut(s) 226
XapI RAATTY 1 cut(s) 161
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.