Rh7CG031000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003904
Physical Location & Seq
Forward (+)
2173336 .. 2175219
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG031000.1

Sequence Viewer

Length: 915 bp
ATGTCCTCCGGCACGTGCTCCACCACCGTCGATCCGGCCGTCGGCGCGGCCAAAGAGTTCATGCTGTTCGGCGTGCGCGTGGTGGTTGACTCCATGAGGAAGAGCGTTAGTCTAAATAATCTCTCGCAGTACGAACACCCTACCGAGGCCTCCAACAACAACAATAACAGCTCCGGCGCCGGCGCCGGCAAGGACGACGCCGTCGCTGGTTACGTATCTGAGAACGACGTCGTTCACAATTCTGGCGGGAATCGCGAGCGCGAACGCAAGCGAGGAGTTCCGTGGACGGAGGATGAGCACAAGCTATTTCTGCTTGGATTGCAGAAAGTAGGGAAAGGAGATTGGAGAGGGATCTCAAGGAACTATGTCAAGACTCGCACGCCGACTCAGGTGGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGGAGCAACCACAATCGCCGCCGCCGCAGATCTAGCCTATTTGATATCACCACCGATTCGGTCCCTGCAACTCCAATGGAAGAAGAGCAAGTACATCATCAAGATAACACATCTCACCTGCACTCGTTGCCACCACCTCCACCACAATCCGAATCTTGCAATCCTAATGGATTTTCGATGGTGCCAATTTTTCCAATGAACGTAGGTCCAGCTGTTGTACAAGTCCCCACTAAGAAACCAACAGCAAATCTAAAACTGGGACAAGGAAATCCGGGGTGTGCTTCCCCTAAGATCGTCCATCCAGTTGCTCTGCACTCGGCCCCTCATGCTACAGAAGCATCTGATCTAAACTTGAATGCGACAATCGACACATCGCCTCTAGCTCTCAACCTCTCCTTGTCAATGAACTCGAGGGAATCATCGTCAAGGCATTCGGCTTTCCAAGCAATGTCAAGCTTCGGCAATGGGGACAACATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

304

Amino Acids

32.87

Weight (kDa)

8.99

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 93 - 139 5.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 549
AasI GACNNNNNNGTC 1 cut(s) 200
AatII GACGTC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 549
AccB1I GGYRCC 3 cut(s) 176, 182, 604
AccII CGCG 4 cut(s) 47, 78, 255, 261
AciI CCGC 6 cut(s) 47, 246, 421, 442, 445, 448
AclWI GGATC 2 cut(s) 26, 359
AcoI YGGCCR 2 cut(s) 36, 48
AcvI CACGTG 1 cut(s) 15
AcyI GRCGYC 4 cut(s) 177, 183, 198, 228
AfaI GTAC 4 cut(s) 131, 413, 516, 642
AfiI CCNNNNNNNGG 2 cut(s) 41, 145
AgsI TTSAA 1 cut(s) 778
AluBI AGCT 5 cut(s) 171, 304, 635, 806, 879
AluI AGCT 5 cut(s) 171, 304, 635, 806, 879
Alw21I GWGCWC 2 cut(s) 20, 300
AlwI GGATC 2 cut(s) 26, 359
Ama87I CYCGRG 1 cut(s) 832
AoxI GGCC 4 cut(s) 36, 48, 147, 741
AspLEI GCGC 5 cut(s) 47, 78, 179, 185, 261
AspS9I GGNCC 3 cut(s) 484, 629, 742
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 2 cut(s) 463, 530
AsuNHI GCTAGC 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 832
AvaII GGWCC 2 cut(s) 484, 629
BanI GGYRCC 3 cut(s) 176, 182, 604
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbrPI CACGTG 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 20, 300
BccI CCATC 2 cut(s) 595, 729
BceAI ACGGC 2 cut(s) 23, 185
BcnI CCSGG 1 cut(s) 696
BfaI CTAG 3 cut(s) 396, 456, 803
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 2 cut(s) 180, 186
BfuAI ACCTGC 1 cut(s) 549
BglII AGATCT 1 cut(s) 452
BisI GCNGC 4 cut(s) 48, 442, 445, 448
BlsI GCNGC 4 cut(s) 49, 443, 446, 449
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 2 cut(s) 484, 629
BmeT110I CYCGRG 1 cut(s) 832
BmgT120I GGNCC 3 cut(s) 484, 629, 742
BmiI GGNNCC 5 cut(s) 178, 184, 486, 606, 744
BmrFI CCNGG 1 cut(s) 696
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 1 cut(s) 770
BmtI GCTAGC 1 cut(s) 399
BmuI ACTGGG 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 696
BsaAI YACGTR 2 cut(s) 15, 214
BsaHI GRCGYC 4 cut(s) 177, 183, 198, 228
BsaJI CCNNGG 3 cut(s) 144, 281, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 145
Bse118I RCCGGY 2 cut(s) 179, 185
Bse1I ACTGG 2 cut(s) 684, 725
Bse3DI GCAATG 2 cut(s) 876, 892
BseDI CCNNGG 3 cut(s) 144, 281, 695
BseGI GGATG 2 cut(s) 298, 721
BseLI CCNNNNNNNGG 2 cut(s) 41, 145
BseMI GCAATG 2 cut(s) 876, 892
BseMII CTCAG 3 cut(s) 210, 401, 419
BseNI ACTGG 2 cut(s) 684, 725
BseRI GAGGAG 1 cut(s) 288
BseX3I CGGCCG 1 cut(s) 36
BsgI GTGCAG 2 cut(s) 527, 719
Bsh1236I CGCG 4 cut(s) 47, 78, 255, 261
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 4 cut(s) 38, 50, 149, 743
BshNI GGYRCC 3 cut(s) 176, 182, 604
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 2 cut(s) 20, 300
BsiHKCI CYCGRG 1 cut(s) 832
BsiSI CCGG 7 cut(s) 9, 35, 174, 180, 186, 424, 695
BslFI GGGAC 4 cut(s) 470, 632, 696, 905
BslI CCNNNNNNNGG 2 cut(s) 41, 145
BsmFI GGGAC 4 cut(s) 470, 632, 696, 905
BsmI GAATGC 2 cut(s) 784, 853
BsnI GGCC 4 cut(s) 38, 50, 149, 743
BsoBI CYCGRG 1 cut(s) 832
Bsp1286I GDGCHC 2 cut(s) 20, 300
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 5 cut(s) 31, 351, 452, 714, 766
Bsp68I TCGCGA 1 cut(s) 255
BspACI CCGC 6 cut(s) 47, 246, 421, 442, 445, 448
BspANI GGCC 4 cut(s) 38, 50, 149, 743
BspCNI CTCAG 3 cut(s) 211, 400, 418
BspFNI CGCG 4 cut(s) 47, 78, 255, 261
BspLI GGNNCC 5 cut(s) 178, 184, 486, 606, 744
BspMI ACCTGC 1 cut(s) 549
BspOI GCTAGC 1 cut(s) 399
BspPI GGATC 2 cut(s) 26, 359
BspQI GCTCTTC 2 cut(s) 95, 501
BspT107I GGYRCC 3 cut(s) 176, 182, 604
BsrDI GCAATG 2 cut(s) 876, 892
BsrFI RCCGGY 2 cut(s) 179, 185
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 2 cut(s) 684, 725
BssAI RCCGGY 2 cut(s) 179, 185
BssECI CCNNGG 3 cut(s) 144, 281, 695
BssMI GATC 5 cut(s) 31, 351, 452, 714, 766
BssNI GRCGYC 4 cut(s) 177, 183, 198, 228
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 95, 501
BstACI GRCGYC 4 cut(s) 177, 183, 198, 228
BstAPI GCANNNNNTGC 1 cut(s) 550
BstAUI TGTACA 1 cut(s) 640
BstBAI YACGTR 2 cut(s) 15, 214
BstC8I GCNNGC 7 cut(s) 74, 181, 187, 257, 269, 380, 397
BstDEI CTNAG 5 cut(s) 219, 387, 405, 654, 711
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 298, 721
BstFNI CGCG 4 cut(s) 47, 78, 255, 261
BstH2I RGCGCY 2 cut(s) 180, 186
BstHHI GCGC 5 cut(s) 47, 78, 179, 185, 261
BstKTI GATC 5 cut(s) 34, 354, 455, 717, 769
BstMBI GATC 5 cut(s) 31, 351, 452, 714, 766
BstMCI CGRYCG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 753
BstSNI TACGTA 1 cut(s) 214
BstUI CGCG 4 cut(s) 47, 78, 255, 261
BstX2I RGATCY 2 cut(s) 351, 452
BstYI RGATCY 2 cut(s) 351, 452
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 4 cut(s) 38, 50, 149, 743
BtgI CCRYGG 1 cut(s) 281
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 298, 721
BtsIMutI CAGTG 1 cut(s) 910
BtuMI TCGCGA 1 cut(s) 255
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 7 cut(s) 74, 181, 187, 257, 269, 380, 397
CfoI GCGC 5 cut(s) 47, 78, 179, 185, 261
Cfr10I RCCGGY 2 cut(s) 179, 185
Cfr13I GGNCC 3 cut(s) 484, 629, 742
CseI GACGC 1 cut(s) 206
Csp6I GTAC 4 cut(s) 130, 412, 515, 641
CviAII CATG 4 cut(s) 61, 94, 401, 749
CviQI GTAC 4 cut(s) 130, 412, 515, 641
DdeI CTNAG 5 cut(s) 219, 387, 405, 654, 711
DinI GGCGCC 2 cut(s) 178, 184
DpnI GATC 5 cut(s) 33, 353, 454, 716, 768
DpnII GATC 5 cut(s) 31, 351, 452, 714, 766
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 2 cut(s) 36, 48
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 95, 501
EarI CTCTTC 2 cut(s) 95, 501
EciI GGCGGA 1 cut(s) 410
EclXI CGGCCG 1 cut(s) 36
Eco105I TACGTA 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 149
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 484, 629
Eco52I CGGCCG 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 15
Eco88I CYCGRG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 469
EgeI GGCGCC 2 cut(s) 178, 184
EheI GGCGCC 2 cut(s) 178, 184
FaeI CATG 4 cut(s) 64, 97, 404, 752
FaiI YATR 5 cut(s) 62, 95, 366, 402, 750
FaqI GGGAC 4 cut(s) 470, 632, 696, 905
FatI CATG 4 cut(s) 60, 93, 400, 748
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 4 cut(s) 48, 442, 445, 448
FokI GGATG 2 cut(s) 305, 708
Fsp4HI GCNGC 4 cut(s) 48, 442, 445, 448
FspBI CTAG 3 cut(s) 396, 456, 803
GlaI GCGC 5 cut(s) 46, 77, 178, 184, 260
GluI GCNGC 4 cut(s) 48, 442, 445, 448
HaeII RGCGCY 2 cut(s) 180, 186
HaeIII GGCC 4 cut(s) 38, 50, 149, 743
HapII CCGG 7 cut(s) 9, 35, 174, 180, 186, 424, 695
HgaI GACGC 1 cut(s) 206
HhaI GCGC 5 cut(s) 47, 78, 179, 185, 261
Hin1I GRCGYC 4 cut(s) 177, 183, 198, 228
Hin1II CATG 4 cut(s) 64, 97, 404, 752
Hin6I GCGC 5 cut(s) 45, 76, 177, 183, 259
HinP1I GCGC 5 cut(s) 45, 76, 177, 183, 259
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 7 cut(s) 89, 250, 373, 385, 479, 575, 839
HpaII CCGG 7 cut(s) 9, 35, 174, 180, 186, 424, 695
HphI GGTGA 2 cut(s) 463, 530
Hpy166II GTNNAC 3 cut(s) 88, 235, 285
Hpy188I TCNGA 4 cut(s) 220, 408, 574, 766
Hpy188III TCNNGA 3 cut(s) 254, 370, 524
Hpy8I GTNNAC 3 cut(s) 88, 235, 285
Hpy99I CGWCG 6 cut(s) 32, 44, 200, 206, 230, 233
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 4 cut(s) 14, 213, 228, 624
HpyCH4V TGCA 5 cut(s) 322, 491, 544, 582, 736
HpyF3I CTNAG 5 cut(s) 219, 387, 405, 654, 711
HpySE526I ACGT 4 cut(s) 14, 213, 228, 624
Hsp92I GRCGYC 4 cut(s) 177, 183, 198, 228
Hsp92II CATG 4 cut(s) 64, 97, 404, 752
HspAI GCGC 5 cut(s) 45, 76, 177, 183, 259
KasI GGCGCC 2 cut(s) 176, 182
KroI GCCGGC 2 cut(s) 179, 185
KroNI GCCGGC 2 cut(s) 181, 187
Kzo9I GATC 5 cut(s) 31, 351, 452, 714, 766
LguI GCTCTTC 2 cut(s) 95, 501
LmnI GCTCC 3 cut(s) 23, 176, 426
LweI GCATC 1 cut(s) 770
MaeI CTAG 3 cut(s) 396, 456, 803
MaeII ACGT 4 cut(s) 14, 213, 228, 624
MaeIII GTNAC 1 cut(s) 209
MalI GATC 5 cut(s) 33, 353, 454, 716, 768
MboI GATC 5 cut(s) 31, 351, 452, 714, 766
MboII GAAGA 3 cut(s) 112, 515, 518
MflI RGATCY 2 cut(s) 351, 452
MhlI GDGCHC 2 cut(s) 20, 300
MluCI AATT 2 cut(s) 238, 609
Mly113I GGCGCC 2 cut(s) 177, 183
MlyI GAGTC 3 cut(s) 83, 367, 379
MmeI TCCRAC 1 cut(s) 177
MreI CGCCGGCG 1 cut(s) 179
MroNI GCCGGC 2 cut(s) 179, 185
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 7 cut(s) 9, 35, 174, 180, 186, 424, 695
MspR9I CCNGG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 784, 853
MvnI CGCG 4 cut(s) 47, 78, 255, 261
NaeI GCCGGC 2 cut(s) 181, 187
NarI GGCGCC 2 cut(s) 177, 183
NciI CCSGG 1 cut(s) 696
NdeII GATC 5 cut(s) 31, 351, 452, 714, 766
NgoMIV GCCGGC 2 cut(s) 179, 185
NheI GCTAGC 1 cut(s) 395
NlaIII CATG 4 cut(s) 64, 97, 404, 752
NlaIV GGNNCC 5 cut(s) 178, 184, 486, 606, 744
NmeAIII GCCGAG 1 cut(s) 719
NruI TCGCGA 1 cut(s) 255
PaeR7I CTCGAG 1 cut(s) 832
PaqCI CACCTGC 1 cut(s) 549
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 2 cut(s) 95, 501
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 75, 210
PctI GAATGC 2 cut(s) 784, 853
PdiI GCCGGC 2 cut(s) 181, 187
PfeI GAWTC 4 cut(s) 250, 479, 575, 839
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 4 cut(s) 49, 443, 446, 449
PleI GAGTC 3 cut(s) 83, 367, 379
PluTI GGCGCC 2 cut(s) 180, 186
PmaCI CACGTG 1 cut(s) 15
PmlI CACGTG 1 cut(s) 15
PpsI GAGTC 3 cut(s) 83, 367, 379
Ppu21I YACGTR 2 cut(s) 15, 214
PspCI CACGTG 1 cut(s) 15
PspN4I GGNNCC 5 cut(s) 178, 184, 486, 606, 744
PspPI GGNCC 3 cut(s) 484, 629, 742
PspXI VCTCGAGB 1 cut(s) 832
PsuI RGATCY 2 cut(s) 351, 452
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 635
RruI TCGCGA 1 cut(s) 255
RsaI GTAC 4 cut(s) 131, 413, 516, 642
RsaNI GTAC 4 cut(s) 130, 412, 515, 641
SapI GCTCTTC 2 cut(s) 95, 501
SatI GCNGC 4 cut(s) 48, 442, 445, 448
Sau3AI GATC 5 cut(s) 31, 351, 452, 714, 766
Sau96I GGNCC 3 cut(s) 484, 629, 742
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 3 cut(s) 83, 367, 379
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 2 cut(s) 20, 300
SfaNI GCATC 1 cut(s) 770
SfcI CTRYAG 1 cut(s) 753
SfoI GGCGCC 2 cut(s) 178, 184
Sfr274I CTCGAG 1 cut(s) 832
SgrAI CRCCGGYG 1 cut(s) 179
SinI GGWCC 2 cut(s) 484, 629
SlaI CTCGAG 1 cut(s) 832
SmlI CTYRAG 2 cut(s) 355, 832
SmoI CTYRAG 2 cut(s) 355, 832
SnaBI TACGTA 1 cut(s) 214
Sse9I AATT 2 cut(s) 238, 609
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 6 cut(s) 47, 246, 421, 442, 445, 448
SspDI GGCGCC 2 cut(s) 176, 182
SspMI CTAG 3 cut(s) 396, 456, 803
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 694
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 4 cut(s) 17, 216, 231, 627
TaqI TCGA 4 cut(s) 30, 599, 789, 833
TaqII GACCGA 1 cut(s) 472
TasI AATT 2 cut(s) 238, 609
TatI WGTACW 3 cut(s) 411, 514, 640
TauI GCSGC 4 cut(s) 50, 444, 447, 450
TfiI GAWTC 4 cut(s) 250, 479, 575, 839
TscAI CASTG 1 cut(s) 910
TspDTI ATGAA 3 cut(s) 49, 635, 842
TspGWI ACGGA 2 cut(s) 270, 302
TspRI CASTG 1 cut(s) 910
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 484, 629
XhoI CTCGAG 1 cut(s) 832
XspI CTAG 3 cut(s) 396, 456, 803
ZraI GACGTC 1 cut(s) 229
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.