FvH4_5g16170
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003904
Physical Location & Seq
Reverse (-)
9222638 .. 9224548
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16170.t1

Sequence Viewer

Length: 1005 bp
ATGCTACCGCCTCTGCCGCGCTCCCTTTTTTTTTACCCTTTTACTTTTTTAATCCCTCTCTTCTTTGTTTTCTCCCAAAATCGTACGGCTTCAGATCCATCGCCGCCGAAGATGTCATCCTCCGGCACCTGCTCCACCGTCGATCCCGCCGGCGCGTCCAAAGAGTTCATGCTCTTCGGCGTCCGCGTCGTGGTTGACTCCATGAGGAAGAGCGTCAGTCTCAACAATCTCTCCCAGTACGAGCAGCCTACCGAGGCCTCCAACAACAACAGCAGCTCCGGCGCCGGCAAGGACGACGCCGTCGCCGGTTACGCCTCCGAGAACGACGTCGTTCACAATTCTGGCGGGAACCGCGAACGCAAGCGAGGAGTGCCGTGGACGGAGGAGGAGCACAAGCTGTTCCTGCTTGGATTGCAGAAAGTAGGCAAAGGAGATTGGAGAGGGATCTCAAGGAACTATGTCAAGACTCGCACGCCGACTCAGGTTGCTAGCCATGCTCAGAAATACTTTCTCCGCCGGAGCAACCACAATCGCCGTCGCCGCAGATCTAGCCTCTTTGATATCACCACCGATTCGGTCCCCGTAATTGCAATGGAAGAAGAGCAAGTACAATATCAAGATAACACATCTCACTCACAACAGTTGCCACCACCTCCACCAACCGAATCTTGCAATCCTAATGGATTTTCGATGATGCCAATTTTTGCAATGAACGTAGGTCCAGCTGTTGTACAAGTTCCCACTATGAATCCAACAGGAAATCCAACGCTTGGACAAGGAAATCCAGGGGGTCCTTCCTCTAAGCTTGTCCTTCCAGTTGTGCATTCGGCCCCTCATCCTACAGAATCATGCGATCTAAACCTGAATGCAACAGCTGACACATCGCCACTGGCTCTCAACCTCTCTTTGTCAATGAACTCAATGGAATCATCATCAAGGCGTTTGCCTTTCCAAGCAATGTCAAGCTTCAGCAAAGGGGACAACAACATCATCAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

335

Amino Acids

36.43

Weight (kDa)

8.97

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 124 - 170 2.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 137
AasI GACNNNNNNGTC 1 cut(s) 299
AatII GACGTC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 2 cut(s) 125, 281
AccB7I CCANNNNNTGG 1 cut(s) 770
AccII CGCG 4 cut(s) 19, 155, 186, 354
AciI CCGC 9 cut(s) 8, 17, 104, 147, 184, 345, 352, 514, 541
AclWI GGATC 3 cut(s) 89, 137, 452
AcuI CTGAAG 2 cut(s) 75, 952
AcyI GRCGYC 4 cut(s) 180, 282, 297, 327
AfaI GTAC 4 cut(s) 85, 239, 609, 732
AfiI CCNNNNNNNGG 2 cut(s) 190, 770
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 6 cut(s) 276, 397, 725, 805, 875, 966
AluI AGCT 6 cut(s) 276, 397, 725, 805, 875, 966
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 89, 137, 452
AoxI GGCC 2 cut(s) 255, 828
ApeKI GCWGC 2 cut(s) 244, 273
AspLEI GCGC 3 cut(s) 21, 155, 284
AspS9I GGNCC 4 cut(s) 577, 719, 791, 829
AsuHPI GGTGA 1 cut(s) 556
AsuNHI GCTAGC 1 cut(s) 488
AvaII GGWCC 3 cut(s) 577, 719, 791
BanI GGYRCC 2 cut(s) 125, 281
BarI GAAGNNNNNNTAC 2 cut(s) 591, 623
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 256, 285
BccI CCATC 1 cut(s) 106
BceAI ACGGC 4 cut(s) 102, 284, 358, 519
BciT130I CCWGG 1 cut(s) 786
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 489, 549
BfmI CTRYAG 1 cut(s) 840
BfoI RGCGCY 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 545
BisI GCNGC 5 cut(s) 17, 104, 245, 274, 541
BlsI GCNGC 5 cut(s) 18, 105, 246, 275, 542
Bme1390I CCNGG 1 cut(s) 786
Bme18I GGWCC 3 cut(s) 577, 719, 791
BmgT120I GGNCC 4 cut(s) 577, 719, 791, 829
BmiI GGNNCC 6 cut(s) 127, 283, 350, 579, 792, 831
BmrFI CCNGG 1 cut(s) 786
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 684
BmtI GCTAGC 1 cut(s) 492
BmuI ACTGGG 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 433
BsaHI GRCGYC 4 cut(s) 180, 282, 297, 327
BsaJI CCNNGG 3 cut(s) 252, 374, 785
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 770
Bse118I RCCGGY 3 cut(s) 149, 284, 305
Bse1I ACTGG 3 cut(s) 235, 815, 894
Bse3DI GCAATG 3 cut(s) 597, 714, 963
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 3 cut(s) 252, 374, 785
BseGI GGATG 2 cut(s) 116, 835
BseLI CCNNNNNNNGG 2 cut(s) 190, 770
BseMI GCAATG 3 cut(s) 597, 714, 963
BseMII CTCAG 2 cut(s) 494, 512
BseNI ACTGG 3 cut(s) 235, 815, 894
BseRI GAGGAG 3 cut(s) 381, 398, 401
BseXI GCAGC 2 cut(s) 256, 285
Bsh1236I CGCG 4 cut(s) 19, 155, 186, 354
BshFI GGCC 2 cut(s) 257, 830
BshNI GGYRCC 2 cut(s) 125, 281
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 6 cut(s) 123, 150, 279, 285, 306, 517
BsiWI CGTACG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 563, 992
BslI CCNNNNNNNGG 2 cut(s) 190, 770
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 563, 992
BsmI GAATGC 2 cut(s) 823, 871
BsnI GGCC 2 cut(s) 257, 830
Bsp1286I GDGCHC 1 cut(s) 393
Bsp1407I TGTACA 1 cut(s) 730
Bsp143I GATC 5 cut(s) 94, 142, 444, 545, 853
BspACI CCGC 9 cut(s) 8, 17, 104, 147, 184, 345, 352, 514, 541
BspANI GGCC 2 cut(s) 257, 830
BspCNI CTCAG 2 cut(s) 493, 511
BspFNI CGCG 4 cut(s) 19, 155, 186, 354
BspLI GGNNCC 6 cut(s) 127, 283, 350, 579, 792, 831
BspMI ACCTGC 1 cut(s) 137
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 3 cut(s) 89, 137, 452
BspQI GCTCTTC 3 cut(s) 179, 203, 594
BspT107I GGYRCC 2 cut(s) 125, 281
BsrDI GCAATG 3 cut(s) 597, 714, 963
BsrFI RCCGGY 3 cut(s) 149, 284, 305
BsrGI TGTACA 1 cut(s) 730
BsrI ACTGG 3 cut(s) 235, 815, 894
BssAI RCCGGY 3 cut(s) 149, 284, 305
BssECI CCNNGG 3 cut(s) 252, 374, 785
BssMI GATC 5 cut(s) 94, 142, 444, 545, 853
BssNI GRCGYC 4 cut(s) 180, 282, 297, 327
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 2 cut(s) 139, 642
Bst6I CTCTTC 4 cut(s) 65, 179, 203, 594
BstACI GRCGYC 4 cut(s) 180, 282, 297, 327
BstAUI TGTACA 1 cut(s) 730
BstC8I GCNNGC 5 cut(s) 151, 286, 362, 473, 490
BstDEI CTNAG 3 cut(s) 480, 498, 801
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 116, 835
BstFNI CGCG 4 cut(s) 19, 155, 186, 354
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 3 cut(s) 21, 155, 284
BstKTI GATC 5 cut(s) 97, 145, 447, 548, 856
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 5 cut(s) 94, 142, 444, 545, 853
BstNI CCWGG 1 cut(s) 786
BstSCI CCNGG 1 cut(s) 784
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 4 cut(s) 19, 155, 186, 354
BstV1I GCAGC 2 cut(s) 256, 285
BstX2I RGATCY 3 cut(s) 94, 444, 545
BstYI RGATCY 3 cut(s) 94, 444, 545
BsuRI GGCC 2 cut(s) 257, 830
BtgI CCRYGG 1 cut(s) 374
BtgZI GCGATG 2 cut(s) 84, 867
BtsCI GGATG 2 cut(s) 116, 835
BtsIMutI CAGTG 2 cut(s) 887, 1000
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 5 cut(s) 151, 286, 362, 473, 490
CfoI GCGC 3 cut(s) 21, 155, 284
Cfr10I RCCGGY 3 cut(s) 149, 284, 305
Cfr13I GGNCC 4 cut(s) 577, 719, 791, 829
CseI GACGC 5 cut(s) 144, 169, 175, 202, 305
Csp6I GTAC 4 cut(s) 84, 238, 608, 731
CviAII CATG 4 cut(s) 169, 202, 494, 849
CviQI GTAC 4 cut(s) 84, 238, 608, 731
DdeI CTNAG 3 cut(s) 480, 498, 801
DinI GGCGCC 1 cut(s) 283
DpnI GATC 5 cut(s) 96, 144, 446, 547, 855
DpnII GATC 5 cut(s) 94, 142, 444, 545, 853
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 4 cut(s) 65, 179, 203, 594
EarI CTCTTC 4 cut(s) 65, 179, 203, 594
EciI GGCGGA 1 cut(s) 503
Eco147I AGGCCT 1 cut(s) 257
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 3 cut(s) 577, 719, 791
Eco57I CTGAAG 2 cut(s) 75, 952
EcoO109I RGGNCCY 1 cut(s) 791
EcoRII CCWGG 1 cut(s) 784
EcoRV GATATC 1 cut(s) 562
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 4 cut(s) 172, 205, 497, 852
FaiI YATR 6 cut(s) 170, 203, 459, 495, 746, 850
FaqI GGGAC 2 cut(s) 563, 992
FatI CATG 4 cut(s) 168, 201, 493, 848
FauI CCCGC 2 cut(s) 154, 338
Fnu4HI GCNGC 5 cut(s) 17, 104, 245, 274, 541
FokI GGATG 2 cut(s) 103, 822
Fsp4HI GCNGC 5 cut(s) 17, 104, 245, 274, 541
FspBI CTAG 2 cut(s) 489, 549
GlaI GCGC 3 cut(s) 20, 154, 283
GluI GCNGC 5 cut(s) 17, 104, 245, 274, 541
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 2 cut(s) 257, 830
HapII CCGG 6 cut(s) 123, 150, 279, 285, 306, 517
HgaI GACGC 5 cut(s) 144, 169, 175, 202, 305
HhaI GCGC 3 cut(s) 21, 155, 284
Hin1I GRCGYC 4 cut(s) 180, 282, 297, 327
Hin1II CATG 4 cut(s) 172, 205, 497, 852
Hin6I GCGC 3 cut(s) 19, 153, 282
HinP1I GCGC 3 cut(s) 19, 153, 282
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 803, 964
HinfI GANTC 8 cut(s) 197, 466, 478, 572, 665, 748, 845, 926
HpaII CCGG 6 cut(s) 123, 150, 279, 285, 306, 517
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 3 cut(s) 196, 334, 378
Hpy188I TCNGA 3 cut(s) 94, 319, 501
Hpy188III TCNNGA 2 cut(s) 463, 617
Hpy8I GTNNAC 3 cut(s) 196, 334, 378
Hpy99I CGWCG 7 cut(s) 143, 191, 299, 305, 329, 332, 540
HpyAV CCTTC 2 cut(s) 804, 821
HpyCH4III ACNGT 2 cut(s) 139, 642
HpyCH4IV ACGT 2 cut(s) 327, 714
HpyCH4V TGCA 6 cut(s) 415, 590, 672, 707, 823, 869
HpyF3I CTNAG 3 cut(s) 480, 498, 801
HpySE526I ACGT 2 cut(s) 327, 714
Hsp92I GRCGYC 4 cut(s) 180, 282, 297, 327
Hsp92II CATG 4 cut(s) 172, 205, 497, 852
HspAI GCGC 3 cut(s) 19, 153, 282
KasI GGCGCC 1 cut(s) 281
KroI GCCGGC 2 cut(s) 149, 284
KroNI GCCGGC 2 cut(s) 151, 286
Kzo9I GATC 5 cut(s) 94, 142, 444, 545, 853
LguI GCTCTTC 3 cut(s) 179, 203, 594
LmnI GCTCC 5 cut(s) 26, 137, 281, 388, 519
Lsp1109I GCAGC 2 cut(s) 256, 285
LweI GCATC 1 cut(s) 684
MaeI CTAG 2 cut(s) 489, 549
MaeII ACGT 2 cut(s) 327, 714
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 96, 144, 446, 547, 855
MboI GATC 5 cut(s) 94, 142, 444, 545, 853
MboII GAAGA 6 cut(s) 52, 121, 166, 220, 608, 611
MflI RGATCY 3 cut(s) 94, 444, 545
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 3 cut(s) 337, 585, 699
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 3 cut(s) 191, 460, 472
MmeI TCCRAC 3 cut(s) 285, 776, 788
MreI CGCCGGCG 1 cut(s) 149
MroNI GCCGGC 2 cut(s) 149, 284
MseI TTAA 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 725, 875
MspI CCGG 6 cut(s) 123, 150, 279, 285, 306, 517
MspR9I CCNGG 1 cut(s) 786
Mva1269I GAATGC 2 cut(s) 823, 871
MvaI CCWGG 1 cut(s) 786
MvnI CGCG 4 cut(s) 19, 155, 186, 354
NaeI GCCGGC 2 cut(s) 151, 286
NarI GGCGCC 1 cut(s) 282
NdeII GATC 5 cut(s) 94, 142, 444, 545, 853
NgoMIV GCCGGC 2 cut(s) 149, 284
NheI GCTAGC 1 cut(s) 488
NlaIII CATG 4 cut(s) 172, 205, 497, 852
NlaIV GGNNCC 6 cut(s) 127, 283, 350, 579, 792, 831
PaqCI CACCTGC 1 cut(s) 137
PceI AGGCCT 1 cut(s) 257
PciSI GCTCTTC 3 cut(s) 179, 203, 594
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 2 cut(s) 823, 871
PdiI GCCGGC 2 cut(s) 151, 286
PfeI GAWTC 5 cut(s) 572, 665, 748, 845, 926
Pfl23II CGTACG 1 cut(s) 83
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 770
PkrI GCNGC 5 cut(s) 18, 105, 246, 275, 542
PleI GAGTC 3 cut(s) 191, 460, 472
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 3 cut(s) 191, 460, 472
PpuMI RGGWCCY 1 cut(s) 791
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspLI CGTACG 1 cut(s) 83
PspN4I GGNNCC 6 cut(s) 127, 283, 350, 579, 792, 831
PspPI GGNCC 4 cut(s) 577, 719, 791, 829
PspPPI RGGWCCY 1 cut(s) 791
PsuI RGATCY 3 cut(s) 94, 444, 545
PsyI GACNNNGTC 1 cut(s) 299
PvuII CAGCTG 2 cut(s) 725, 875
RsaI GTAC 4 cut(s) 85, 239, 609, 732
RsaNI GTAC 4 cut(s) 84, 238, 608, 731
SapI GCTCTTC 3 cut(s) 179, 203, 594
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 5 cut(s) 17, 104, 245, 274, 541
Sau3AI GATC 5 cut(s) 94, 142, 444, 545, 853
Sau96I GGNCC 4 cut(s) 577, 719, 791, 829
SchI GAGTC 3 cut(s) 191, 460, 472
ScrFI CCNGG 1 cut(s) 786
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 1 cut(s) 684
SfcI CTRYAG 1 cut(s) 840
SfoI GGCGCC 1 cut(s) 283
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 3 cut(s) 577, 719, 791
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 3 cut(s) 337, 585, 699
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 9 cut(s) 8, 17, 104, 147, 184, 345, 352, 514, 541
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 2 cut(s) 489, 549
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 784
TaaI ACNGT 2 cut(s) 139, 642
TaiI ACGT 2 cut(s) 330, 717
TaqI TCGA 2 cut(s) 141, 689
TaqII GACCGA 1 cut(s) 565
TasI AATT 3 cut(s) 337, 585, 699
TatI WGTACW 2 cut(s) 607, 730
TauI GCSGC 3 cut(s) 19, 106, 543
TfiI GAWTC 5 cut(s) 572, 665, 748, 845, 926
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 2 cut(s) 894, 1000
TseI GCWGC 2 cut(s) 244, 273
TspDTI ATGAA 4 cut(s) 157, 725, 761, 929
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 894, 1000
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 770
VpaK11BI GGWCC 3 cut(s) 577, 719, 791
XspI CTAG 2 cut(s) 489, 549
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.