Prupe.5G182000_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0003904
Physical Location & Seq
Forward (+)
15208927 .. 15211253
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G182000.1

Sequence Viewer

Length: 897 bp
ATGGCTGGCACGTGCTCCACCGTCGAGCCTGCGGGCGCCGGAGAGATCATGCTCTTCGGCGTGCGCGTGGTGATCGACTCCATGAGGAAGAGCGTGAGTTTGAACAATCTCTCGCAGTACGAGCAGCCTCAAGAGGGCTCCAACAACAACAGCGGCAATAACACCATCGCCGGCAAGGATGACGTGGCCGGTTACGCCTCTGAGAACGACGTAGTTCACAATTCTGGCGGAAATCGCGAGCGCGAACGCAAGCGAGGGGTTCCATGGACGGAGGAAGAGCACAAGCTATTCCTGCTAGGGTTGCAGAAAGTAGGGAAGGGCGATTGGAGAGGGATCTCTAGAAACTTCGTGAAGACTCGCACACCCACTCAGGTCGCCAGCCACGCTCAGAAATACTTTCTGCGCCGAAACAACCACAATCGCCGCCGCCGCAGATCTAGCCTCTTCGATATCACAACAGATACGGTCACTGCAACTCCAATGGATGAAGAGCAAGTACATCATCAAAATAACACATCTCAATCACATCCATTGCCACCTCCACCACCATCTGAGGCTTGCAATCCTAGTGGATTTTCGATGGTGCCAAATTTTTCATTGACTGTAGGTCCAGCTGTCTTGCCAGTTCCCATTGAGAATCCAATGGGAAATCTAACCTTGGGACACGCAAATCTTGAGAACAATGCTTCGGCTAAGCTTGTCCGTCCAATTGCCCTTCATTCGGCCCCTCATGCTACAGAAATGTCTGATCTAAACTTGAAGTCGACAATGGACACGTCGACTCTAACTCTCAACCTCTCCTTGTCAATGGACCCGAGGGAATCGTCATCAAGGCATTCGGCTTTCCAGGCAATGCCAAGCTTCAGCAATGGGGATAGCATTATTAGTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

32.49

Weight (kDa)

7.2

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 35, 583
AccI GTMKAC 2 cut(s) 764, 779
AccII CGCG 3 cut(s) 66, 237, 243
AciI CCGC 6 cut(s) 32, 153, 228, 424, 427, 430
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 1 cut(s) 847
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 2 cut(s) 119, 498
AfiI CCNNNNNNNGG 2 cut(s) 134, 721
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 2 cut(s) 103, 760
AhdI GACNNNNNGTC 1 cut(s) 606
AjiI CACGTC 2 cut(s) 184, 777
AjnI CCWGG 1 cut(s) 846
AluBI AGCT 4 cut(s) 286, 614, 697, 861
AluI AGCT 4 cut(s) 286, 614, 697, 861
Alw21I GWGCWC 2 cut(s) 17, 282
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 2 cut(s) 186, 723
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 589
AspLEI GCGC 4 cut(s) 38, 66, 243, 405
AspS9I GGNCC 3 cut(s) 608, 724, 811
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 2 cut(s) 608, 811
BanI GGYRCC 2 cut(s) 35, 583
BanII GRGCYC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 480, 512
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 2 cut(s) 17, 282
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 173, 556, 574
BciT130I CCWGG 1 cut(s) 848
BfaI CTAG 4 cut(s) 296, 339, 438, 567
BfmI CTRYAG 2 cut(s) 603, 735
BfoI RGCGCY 1 cut(s) 39
BglII AGATCT 1 cut(s) 434
BisI GCNGC 5 cut(s) 125, 154, 424, 427, 430
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 5 cut(s) 126, 155, 425, 428, 431
Bme1390I CCNGG 1 cut(s) 848
Bme18I GGWCC 2 cut(s) 608, 811
BmeRI GACNNNNNGTC 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 814
BmgBI CACGTC 2 cut(s) 184, 777
BmgT120I GGNCC 3 cut(s) 608, 724, 811
BmiI GGNNCC 6 cut(s) 37, 139, 261, 585, 726, 813
BmrFI CCNGG 1 cut(s) 848
BpiI GAAGAC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 114, 695
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 263, 657, 815
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 721
Bse118I RCCGGY 2 cut(s) 170, 188
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 3 cut(s) 530, 858, 874
BseBI CCWGG 1 cut(s) 848
BseDI CCNNGG 3 cut(s) 263, 657, 815
BseGI GGATG 3 cut(s) 184, 490, 526
BseLI CCNNNNNNNGG 2 cut(s) 134, 721
BseMI GCAATG 3 cut(s) 530, 858, 874
BseMII CTCAG 4 cut(s) 192, 383, 401, 543
BseNI ACTGG 1 cut(s) 623
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 3 cut(s) 66, 237, 243
BshFI GGCC 2 cut(s) 188, 725
BshNI GGYRCC 2 cut(s) 35, 583
BsiHKAI GWGCWC 2 cut(s) 17, 282
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 3 cut(s) 39, 171, 189
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 2 cut(s) 134, 721
BsmFI GGGAC 1 cut(s) 675
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 2 cut(s) 188, 725
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 3 cut(s) 17, 140, 282
Bsp143I GATC 5 cut(s) 45, 72, 333, 434, 748
Bsp1720I GCTNAGC 1 cut(s) 693
Bsp19I CCATGG 1 cut(s) 263
Bsp68I TCGCGA 1 cut(s) 237
BspACI CCGC 6 cut(s) 32, 153, 228, 424, 427, 430
BspANI GGCC 2 cut(s) 188, 725
BspCNI CTCAG 4 cut(s) 193, 382, 400, 544
BspFNI CGCG 3 cut(s) 66, 237, 243
BspLI GGNNCC 6 cut(s) 37, 139, 261, 585, 726, 813
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 4 cut(s) 59, 83, 270, 483
BspT107I GGYRCC 2 cut(s) 35, 583
BsrDI GCAATG 3 cut(s) 530, 858, 874
BsrFI RCCGGY 2 cut(s) 170, 188
BsrI ACTGG 1 cut(s) 623
BssAI RCCGGY 2 cut(s) 170, 188
BssECI CCNNGG 3 cut(s) 263, 657, 815
BssMI GATC 5 cut(s) 45, 72, 333, 434, 748
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 263, 657
Bst2UI CCWGG 1 cut(s) 848
Bst4CI ACNGT 3 cut(s) 22, 466, 604
Bst6I CTCTTC 5 cut(s) 59, 83, 270, 449, 483
BstACI GRCGYC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 9 cut(s) 7, 30, 34, 62, 172, 239, 251, 379, 559
BstDEI CTNAG 5 cut(s) 201, 369, 387, 552, 693
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 3 cut(s) 184, 490, 526
BstFNI CGCG 3 cut(s) 66, 237, 243
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 4 cut(s) 38, 66, 243, 405
BstKTI GATC 5 cut(s) 48, 75, 336, 437, 751
BstMBI GATC 5 cut(s) 45, 72, 333, 434, 748
BstNI CCWGG 1 cut(s) 848
BstSCI CCNGG 1 cut(s) 846
BstSFI CTRYAG 2 cut(s) 603, 735
BstUI CGCG 3 cut(s) 66, 237, 243
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 2 cut(s) 333, 434
BstYI RGATCY 2 cut(s) 333, 434
BsuRI GGCC 2 cut(s) 188, 725
BtgI CCRYGG 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 151
BtrI CACGTC 2 cut(s) 184, 777
BtsCI GGATG 3 cut(s) 184, 490, 526
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
BtuMI TCGCGA 1 cut(s) 237
Cac8I GCNNGC 9 cut(s) 7, 30, 34, 62, 172, 239, 251, 379, 559
CfoI GCGC 4 cut(s) 38, 66, 243, 405
Cfr10I RCCGGY 2 cut(s) 170, 188
Cfr13I GGNCC 3 cut(s) 608, 724, 811
Csp6I GTAC 2 cut(s) 118, 497
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 4 cut(s) 49, 82, 264, 731
CviQI GTAC 2 cut(s) 118, 497
DdeI CTNAG 5 cut(s) 201, 369, 387, 552, 693
DinI GGCGCC 1 cut(s) 37
DpnI GATC 5 cut(s) 47, 74, 335, 436, 750
DpnII GATC 5 cut(s) 45, 72, 333, 434, 748
DriI GACNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 5 cut(s) 59, 83, 270, 449, 483
Eam1105I GACNNNNNGTC 1 cut(s) 606
EarI CTCTTC 5 cut(s) 59, 83, 270, 449, 483
EciI GGCGGA 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 263, 657
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 608, 811
Eco57I CTGAAG 1 cut(s) 847
Eco72I CACGTG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 846
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 263, 657
EcoT38I GRGCYC 1 cut(s) 140
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 263, 657
FaeI CATG 4 cut(s) 52, 85, 267, 734
FaiI YATR 4 cut(s) 50, 83, 265, 732
FaqI GGGAC 1 cut(s) 675
FatI CATG 4 cut(s) 48, 81, 263, 730
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 2 cut(s) 764, 779
Fnu4HI GCNGC 5 cut(s) 125, 154, 424, 427, 430
FokI GGATG 3 cut(s) 191, 497, 513
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 5 cut(s) 125, 154, 424, 427, 430
FspBI CTAG 4 cut(s) 296, 339, 438, 567
GlaI GCGC 4 cut(s) 37, 65, 242, 404
GluI GCNGC 5 cut(s) 125, 154, 424, 427, 430
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 188, 725
HapII CCGG 3 cut(s) 39, 171, 189
HhaI GCGC 4 cut(s) 38, 66, 243, 405
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 4 cut(s) 52, 85, 267, 734
Hin6I GCGC 4 cut(s) 36, 64, 241, 403
HinP1I GCGC 4 cut(s) 36, 64, 241, 403
HincII GTYRAC 2 cut(s) 765, 780
HindII GTYRAC 2 cut(s) 765, 780
HindIII AAGCTT 2 cut(s) 695, 859
HinfI GANTC 5 cut(s) 77, 355, 637, 781, 821
HpaII CCGG 3 cut(s) 39, 171, 189
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 3 cut(s) 217, 765, 780
Hpy188I TCNGA 4 cut(s) 202, 390, 553, 748
Hpy188III TCNNGA 5 cut(s) 131, 236, 339, 349, 674
Hpy8I GTNNAC 3 cut(s) 217, 765, 780
Hpy99I CGWCG 3 cut(s) 26, 212, 781
HpyAV CCTTC 2 cut(s) 310, 725
HpyCH4III ACNGT 3 cut(s) 22, 466, 604
HpyCH4IV ACGT 4 cut(s) 11, 183, 210, 776
HpyCH4V TGCA 3 cut(s) 304, 473, 561
HpyF3I CTNAG 5 cut(s) 201, 369, 387, 552, 693
HpySE526I ACGT 4 cut(s) 11, 183, 210, 776
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 4 cut(s) 52, 85, 267, 734
HspAI GCGC 4 cut(s) 36, 64, 241, 403
KasI GGCGCC 1 cut(s) 35
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 5 cut(s) 45, 72, 333, 434, 748
LguI GCTCTTC 4 cut(s) 59, 83, 270, 483
LmnI GCTCC 2 cut(s) 20, 143
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 4 cut(s) 296, 339, 438, 567
MaeII ACGT 4 cut(s) 11, 183, 210, 776
MaeIII GTNAC 2 cut(s) 191, 466
MalI GATC 5 cut(s) 47, 74, 335, 436, 750
MboI GATC 5 cut(s) 45, 72, 333, 434, 748
MboII GAAGA 6 cut(s) 46, 100, 287, 364, 436, 500
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 333, 434
MhlI GDGCHC 3 cut(s) 17, 140, 282
MluCI AATT 3 cut(s) 220, 589, 708
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 3 cut(s) 71, 349, 775
MmeI TCCRAC 1 cut(s) 165
MroNI GCCGGC 1 cut(s) 170
MspA1I CMGCKG 2 cut(s) 153, 614
MspI CCGG 3 cut(s) 39, 171, 189
MspR9I CCNGG 1 cut(s) 848
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 1 cut(s) 848
MvnI CGCG 3 cut(s) 66, 237, 243
NaeI GCCGGC 1 cut(s) 172
NarI GGCGCC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 263
NdeII GATC 5 cut(s) 45, 72, 333, 434, 748
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 4 cut(s) 52, 85, 267, 734
NlaIV GGNNCC 6 cut(s) 37, 139, 261, 585, 726, 813
NmuCI GTSAC 1 cut(s) 466
NruI TCGCGA 1 cut(s) 237
PciSI GCTCTTC 4 cut(s) 59, 83, 270, 483
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 835
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 637, 821
PkrI GCNGC 5 cut(s) 126, 155, 425, 428, 431
PleI GAGTC 3 cut(s) 71, 349, 775
PluTI GGCGCC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 3 cut(s) 71, 349, 775
Ppu21I YACGTR 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 846
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 846
PspN4I GGNNCC 6 cut(s) 37, 139, 261, 585, 726, 813
PspPI GGNCC 3 cut(s) 608, 724, 811
PsuI RGATCY 2 cut(s) 333, 434
PvuII CAGCTG 1 cut(s) 614
RruI TCGCGA 1 cut(s) 237
RsaI GTAC 2 cut(s) 119, 498
RsaNI GTAC 2 cut(s) 118, 497
SalI GTCGAC 2 cut(s) 763, 778
SapI GCTCTTC 4 cut(s) 59, 83, 270, 483
SatI GCNGC 5 cut(s) 125, 154, 424, 427, 430
Sau3AI GATC 5 cut(s) 45, 72, 333, 434, 748
Sau96I GGNCC 3 cut(s) 608, 724, 811
SchI GAGTC 3 cut(s) 71, 349, 775
ScrFI CCNGG 1 cut(s) 848
SduI GDGCHC 3 cut(s) 17, 140, 282
SfcI CTRYAG 2 cut(s) 603, 735
SfoI GGCGCC 1 cut(s) 37
SinI GGWCC 2 cut(s) 608, 811
SmlI CTYRAG 2 cut(s) 129, 674
SmoI CTYRAG 2 cut(s) 129, 674
Sse9I AATT 3 cut(s) 220, 589, 708
SsiI CCGC 6 cut(s) 32, 153, 228, 424, 427, 430
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 4 cut(s) 296, 339, 438, 567
StyD4I CCNGG 1 cut(s) 846
StyI CCWWGG 2 cut(s) 263, 657
TaaI ACNGT 3 cut(s) 22, 466, 604
TaiI ACGT 4 cut(s) 14, 186, 213, 779
TaqI TCGA 6 cut(s) 24, 75, 447, 578, 764, 779
TasI AATT 3 cut(s) 220, 589, 708
TatI WGTACW 1 cut(s) 496
TauI GCSGC 4 cut(s) 156, 426, 429, 432
TfiI GAWTC 2 cut(s) 637, 821
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 501, 585, 707
TspGWI ACGGA 2 cut(s) 284, 692
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 608, 811
XapI RAATTY 1 cut(s) 589
XbaI TCTAGA 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 764, 779
XspI CTAG 4 cut(s) 296, 339, 438, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.