Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003904

Physical Location & Seq

Genomic Coordinates Reverse (-)

36022864 .. 36024302

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGCAGGAAATGCTCACAATGTGGGAACATGGGTCACAATTCAAGGACTTGCGGTGTCAGGCAGCCGCGGCAGAGAGGTGGAGGTGGAGGTGGTGGCCTTAGGCTTTTTGGGGTCCAAGTACTTGACCTATCTTCTTCTTCTTCCTCATCTAATTCTCTAATTTCCAGGAAGAAGAAGAATATAATAATTAAGAGATGTCCTCCGAGCATGGTCCACTGCTTGCCATCTGTCGCAGCTTCTTCTCCAACAGCACCCTCCTCTTCTACATCTTCACGCCTTCAAAGCAGAGCCTTGATCGACTTAAATTCTGAGAAAATGTCAAATGGCTATCCCTCTGATGGCCTCACAGCGTTACCCCAAGAAAATAATAACAAGGGTGTGGCTTGGAGTGAGGAAGAGCACCGAGTGTTTGTGATGGGGCTAGAAAAGCTCGGTAAGGGCGACTGGAAGGGCATCTCTCGGCATTTTGTTACCACAAGAACTCCAACCCAAGTCGCCAGTCATGCTCAGAAGTATTTTCTGAGAATAAACACCCTCAACAAGAAACGACGCCGTCCCAACCTTTTTTATCTGTCAGCTGTCTTCTCATCAACTTTAGCAGCAGAGCCTGCAGCTCCTCTTCCAACCGCAGCAACTGATTTAGAACTTGAGCTTGCAGCTCCGATACCGTTGGATCAACAGACTAAACCCTGCCCTAGAGCCCTTGTAATTGCACCTATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

243

Amino Acids

26.08

Weight (kDa)

10.08

Isoelectric Point (pI)

66.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19000 AT1G19000 AT1G74840 AT1G74840
fragaria_vesca	FvH4_2g31190 FvH4_5g16170 FvH4_5g16170
malus_domestica	MD01G1036800.v1.1 MD06G1183300.v1.1 MD14G1189300.v1.1
prunus_persica	Prupe.1G413400_v2.0.a1 Prupe.5G182000_v2.0.a1
pyrus_communis	pycom06g16230 pycom14g15700
rosa_chinensis	RchiOBHm_Chr7g0179981
rosa_laevigata	RLG00000005305 RLG00000015426
rosa_multiflora	Rmu_co8001466.1_g000001 Rmu_co8001468.1_g000001 Rmu_sc0003965.1_g000004 Rmu_ssc0000119.1_g000011
rosa_roxburghii	Rroxscaffold_3G00273260 Rroxscaffold_7G00211840 Rroxscaffold_7G00216350
rosa_rugosa	Rorug06G0429500
rosa_samantha	Rh6AG015400 Rh6BG013600 Rh6CG010700 Rh6DG011900 Rh7AG030000 Rh7BG029300 Rh7CG031000 Rh7DG030300
rosa_wichuraiana	Rw7G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AciI	CCGC	4 cut(s)	54, 68, 70, 630
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	553
AdeI	CACNNNGTG	2 cut(s)	23, 409
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	45, 284
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	6 cut(s)	239, 433, 581, 617, 655, 662
AluI	AGCT	6 cut(s)	239, 433, 581, 617, 655, 662
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	684
AlwNI	CAGNNNCTG	2 cut(s)	611, 638
AoxI	GGCC	2 cut(s)	97, 343
ApeKI	GCWGC	6 cut(s)	64, 236, 602, 614, 632, 659
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	115, 214
AvaII	GGWCC	2 cut(s)	115, 214
AxyI	CCTNAGG	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	706
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	6 cut(s)	76, 248, 614, 626, 644, 671
BccI	CCATC	3 cut(s)	235, 335, 412
BceAI	ACGGC	1 cut(s)	540
BciT130I	CCWGG	1 cut(s)	169
BfaI	CTAG	2 cut(s)	425, 699
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	8 cut(s)	65, 68, 71, 237, 603, 615, 633, 660
BlsI	GCNGC	8 cut(s)	66, 69, 72, 238, 604, 616, 634, 661
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	115, 214
BmgT120I	GGNCC	2 cut(s)	115, 214
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	577
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpuEI	CTTGAG	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	452, 501
Bse21I	CCTNAGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	303, 515, 524
BseNI	ACTGG	2 cut(s)	452, 501
BseRI	GAGGAG	2 cut(s)	250, 609
BseXI	GCAGC	6 cut(s)	76, 248, 614, 626, 644, 671
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	99, 345
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	99, 345
Bsp1286I	GDGCHC	2 cut(s)	405, 706
Bsp143I	GATC	2 cut(s)	297, 676
BspACI	CCGC	4 cut(s)	54, 68, 70, 630
BspANI	GGCC	2 cut(s)	99, 345
BspCNI	CTCAG	3 cut(s)	304, 516, 523
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	1 cut(s)	684
BspQI	GCTCTTC	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	452, 501
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	297, 676
BssNI	GRCGYC	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	3 cut(s)	268, 393, 627
BstACI	GRCGYC	1 cut(s)	553
BstAPI	GCANNNNNTGC	2 cut(s)	12, 611
BstC8I	GCNNGC	3 cut(s)	224, 612, 657
BstDEI	CTNAG	4 cut(s)	101, 312, 510, 524
BstDSI	CCRYGG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	300, 679
BstMBI	GATC	2 cut(s)	297, 676
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 70, 285, 430, 506, 611
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	6 cut(s)	76, 248, 614, 626, 644, 671
BstV2I	GAAGAC	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	99, 345
BtgI	CCRYGG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	224, 612, 657
CaiI	CAGNNNCTG	2 cut(s)	611, 638
Cfr13I	GGNCC	2 cut(s)	115, 214
Cfr42I	CCGCGG	1 cut(s)	71
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	3 cut(s)	31, 211, 506
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	4 cut(s)	101, 312, 510, 524
DpnI	GATC	2 cut(s)	299, 678
DpnII	GATC	2 cut(s)	297, 676
DraIII	CACNNNGTG	2 cut(s)	23, 409
Eam1104I	CTCTTC	3 cut(s)	268, 393, 627
EarI	CTCTTC	3 cut(s)	268, 393, 627
Eco24I	GRGCYC	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	115, 214
Eco81I	CCTNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	706
FaeI	CATG	3 cut(s)	34, 214, 509
FaiI	YATR	6 cut(s)	32, 185, 212, 507, 722, 724
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	3 cut(s)	30, 210, 505
Fnu4HI	GCNGC	8 cut(s)	65, 68, 71, 237, 603, 615, 633, 660
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	8 cut(s)	65, 68, 71, 237, 603, 615, 633, 660
FspBI	CTAG	2 cut(s)	425, 699
GluI	GCNGC	8 cut(s)	65, 68, 71, 237, 603, 615, 633, 660
HaeIII	GGCC	2 cut(s)	99, 345
HgaI	GACGC	1 cut(s)	561
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	3 cut(s)	34, 214, 509
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	6 cut(s)	207, 313, 340, 513, 525, 666
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	2 cut(s)	290, 445
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4V	TGCA	3 cut(s)	614, 659, 716
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 70, 285, 430, 506, 611
HpyF3I	CTNAG	4 cut(s)	101, 312, 510, 524
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	3 cut(s)	34, 214, 509
KspI	CCGCGG	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	297, 676
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	622, 667
LpnPI	CCDG	7 cut(s)	46, 154, 181, 433, 514, 624, 706
Lsp1109I	GCAGC	6 cut(s)	76, 248, 614, 626, 644, 671
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	425, 699
MaeIII	GTNAC	3 cut(s)	35, 354, 472
MalI	GATC	2 cut(s)	299, 678
MboI	GATC	2 cut(s)	297, 676
MhlI	GDGCHC	2 cut(s)	405, 706
MluCI	AATT	6 cut(s)	40, 154, 162, 189, 307, 711
MmeI	TCCRAC	4 cut(s)	272, 512, 650, 654
MseI	TTAA	3 cut(s)	192, 305, 727
MslI	CAYNNNNRTG	1 cut(s)	721
MspA1I	CMGCKG	2 cut(s)	70, 581
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	6 cut(s)	12, 70, 285, 430, 506, 611
NdeII	GATC	2 cut(s)	297, 676
NlaIII	CATG	3 cut(s)	34, 214, 509
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PflFI	GACNNNGTC	1 cut(s)	555
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	8 cut(s)	66, 69, 72, 238, 604, 616, 634, 661
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	115, 214
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	2 cut(s)	611, 638
PsyI	GACNNNGTC	1 cut(s)	555
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	721
SacII	CCGCGG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	192, 305, 727
SatI	GCNGC	8 cut(s)	65, 68, 71, 237, 603, 615, 633, 660
Sau3AI	GATC	2 cut(s)	297, 676
Sau96I	GGNCC	2 cut(s)	115, 214
ScaI	AGTACT	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	405, 706
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	612
Sfr303I	CCGCGG	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	115, 214
SmiMI	CAYNNNNRTG	1 cut(s)	721
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	6 cut(s)	40, 154, 162, 189, 307, 711
SsiI	CCGC	4 cut(s)	54, 68, 70, 630
SspMI	CTAG	2 cut(s)	425, 699
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	672
TaqI	TCGA	1 cut(s)	300
TasI	AATT	6 cut(s)	40, 154, 162, 189, 307, 711
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	2 cut(s)	70, 73
Tru1I	TTAA	3 cut(s)	192, 305, 727
Tru9I	TTAA	3 cut(s)	192, 305, 727
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	6 cut(s)	64, 236, 602, 614, 632, 659
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	224
Tth111I	GACNNNGTC	1 cut(s)	555
VpaK11BI	GGWCC	2 cut(s)	115, 214
XapI	RAATTY	1 cut(s)	307
XspI	CTAG	2 cut(s)	425, 699
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.