Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8001468.1

Orthogroup ID

OG0003904

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 235

Gene Structure 235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8001468.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 235 bp

aagagtgatcccatgggcagaagaggagcatcgaatgttcttaattggtcttgagaaattggggaaaggagactggcgtggaatagcgcgaaattatgtaaagactaggactcctactcaggtggcaaaccatgcccacaggtattttacccggctgagtacttctagctccagtgatccacctcacatgccagaagaacaagctttgctgttggggtcgtctatggtagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

9.4

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19000 AT1G19000 AT1G74840 AT1G74840
fragaria_vesca	FvH4_2g31190 FvH4_5g16170 FvH4_5g16170
malus_domestica	MD01G1036800.v1.1 MD06G1183300.v1.1 MD14G1189300.v1.1
prunus_persica	Prupe.1G413400_v2.0.a1 Prupe.5G182000_v2.0.a1
pyrus_communis	pycom06g16230 pycom14g15700
rosa_chinensis	RchiOBHm_Chr7g0179981
rosa_laevigata	RLG00000005305 RLG00000015426
rosa_multiflora	Rmu_co8001466.1_g000001 Rmu_co8001468.1_g000001 Rmu_sc0003965.1_g000004 Rmu_ssc0000119.1_g000011
rosa_roxburghii	Rroxscaffold_3G00273260 Rroxscaffold_7G00211840 Rroxscaffold_7G00216350
rosa_rugosa	Rorug06G0429500
rosa_samantha	Rh6AG015400 Rh6BG013600 Rh6CG010700 Rh6DG011900 Rh7AG030000 Rh7BG029300 Rh7CG031000 Rh7DG030300
rosa_wichuraiana	Rw7G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AclWI	GGATC	2 cut(s)	2, 171
AfaI	GTAC	1 cut(s)	161
AluBI	AGCT	2 cut(s)	169, 204
AluI	AGCT	2 cut(s)	169, 204
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	2, 171
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	106, 166
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bse1I	ACTGG	2 cut(s)	78, 172
BseDI	CCNNGG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	132, 147
BseNI	ACTGG	2 cut(s)	78, 172
BseRI	GAGGAG	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	7, 176
Bsp19I	CCATGG	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	131, 148
BspFNI	CGCG	1 cut(s)	89
BspPI	GGATC	2 cut(s)	2, 171
BsrI	ACTGG	2 cut(s)	78, 172
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	7, 176
BssT1I	CCWWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	118, 156
BstDSI	CCRYGG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	10, 179
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	7, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	13, 132, 188
CviJI	RGCY	4 cut(s)	155, 169, 204, 231
CviKI_1	RGCY	4 cut(s)	155, 169, 204, 231
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	118, 156
DpnI	GATC	2 cut(s)	9, 178
DpnII	GATC	2 cut(s)	7, 176
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	16, 135, 191
FaiI	YATR	5 cut(s)	14, 97, 133, 189, 225
FatI	CATG	3 cut(s)	12, 131, 187
FspBI	CTAG	2 cut(s)	106, 166
GlaI	GCGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	16, 135, 191
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	118, 156
Hsp92II	CATG	3 cut(s)	16, 135, 191
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	7, 176
LmnI	GCTCC	2 cut(s)	26, 174
LpnPI	CCDG	6 cut(s)	59, 105, 125, 165, 185, 205
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	106, 166
MalI	GATC	2 cut(s)	9, 178
MboI	GATC	2 cut(s)	7, 176
MboII	GAAGA	2 cut(s)	33, 207
MluCI	AATT	3 cut(s)	43, 57, 92
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	17, 193
MseI	TTAA	1 cut(s)	42
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	7, 176
NlaIII	CATG	3 cut(s)	16, 135, 191
NspI	RCATGY	1 cut(s)	191
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	7, 176
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	5 cut(s)	124, 144, 171, 185, 206
SfaNI	GCATC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	3 cut(s)	43, 57, 92
SspMI	CTAG	2 cut(s)	106, 166
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	1 cut(s)	32
TasI	AATT	3 cut(s)	43, 57, 92
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	179
TspRI	CASTG	1 cut(s)	179
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	2 cut(s)	106, 166
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.