AT1G74840
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003904
Physical Location & Seq
Reverse (-)
28115443 .. 28117422
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74840.2

Sequence Viewer

Length: 798 bp
ATGGCCGACGGTAGTACTAGTTCTTCGGAGTCCACTACCGCCTGCGCTGGAAGCGGCACAAGAAGAGAGATTATGCTGTTCGGAGTCAGGGTTGTGCTTGACCCGATGAGAAAGTGCGTGAGTTTGAACAATCTGTCTGACTATGAACAGACGGCGGAGACTCCAAAGATCGACGGCGAAGATAGAGATGAACAAGATATGAACAAAACCCCGGCCGGTTACGCCTCGGCGGATGAAGCTCTTCCCATGTCTTCTTCTAACGGCAAAATCGAGAGGAAACGAGGAGTTCCATGGACTGAAGAAGAACACAAGCTGTTCTTGCTTGGGCTGCAGAGAGTCGGTAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTCAAGACCAGAACCTCTACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCAGGCGAAGTAATCTTAACCGTCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGTCATACCCATGGAAGAAGATCACCAAGTGCTTATACAGGAGAACACATCTCAATCATCTTCTCCTGTACCGGAAATCAACAACTTCTCTATACATCCGGTTATGCAAGTCTTTCCCGAGTTCCCGGTACCAACAGGGAATCAATCATACGGACAGCTTACTTCATCGAATCTCATCAATTTGGTTCCATTAACTTTTCAGTCAAGTCCAGCACCGCTTTCTCTCAACCTCTCACTAGCTTCATCTAATCTTAATGAACCATCTCCTTCAATGCATCCAGCATTCAACACGATTGGAGTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.27

Weight (kDa)

6.23

Isoelectric Point (pI)

71.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 96 - 142 6.6e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 619
AciI CCGC 6 cut(s) 39, 54, 155, 230, 454, 707
AcoI YGGCCR 2 cut(s) 3, 213
AcuI CTGAAG 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 520
AfaI GTAC 3 cut(s) 16, 561, 621
AgsI TTSAA 3 cut(s) 127, 762, 778
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 4 cut(s) 239, 313, 649, 731
AluI AGCT 4 cut(s) 239, 313, 649, 731
Alw26I GTCTC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 2 cut(s) 3, 213
ApeKI GCWGC 1 cut(s) 328
Asp700I GAANNNNTTC 2 cut(s) 240, 422
Asp718I GGTACC 1 cut(s) 619
AspLEI GCGC 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 212, 617
AsuHPI GGTGA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 608
AxyI CCTNAGG 1 cut(s) 428
BanI GGYRCC 1 cut(s) 619
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 315
BccI CCATC 1 cut(s) 760
BceAI ACGGC 3 cut(s) 168, 190, 277
BcnI CCSGG 2 cut(s) 212, 617
BcoDI GTCTC 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 4 cut(s) 18, 405, 465, 728
BfmI CTRYAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 461
BisI GCNGC 3 cut(s) 55, 329, 454
BlsI GCNGC 3 cut(s) 56, 330, 455
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 212, 617
BmeT110I CYCGRG 1 cut(s) 608
BmiI GGNNCC 2 cut(s) 621, 678
BmrFI CCNGG 2 cut(s) 212, 617
BmsI GCATC 1 cut(s) 775
BpiI GAAGAC 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 212, 617
BsaJI CCNNGG 4 cut(s) 210, 225, 290, 501
BsaWI WCCGGW 2 cut(s) 562, 589
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bse118I RCCGGY 1 cut(s) 215
Bse21I CCTNAGG 1 cut(s) 428
BseDI CCNNGG 4 cut(s) 210, 225, 290, 501
BseGI GGATG 3 cut(s) 238, 586, 766
BseMII CTCAG 2 cut(s) 428, 442
BseRI GAGGAG 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 5, 215
BshNI GGYRCC 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 5 cut(s) 212, 216, 563, 590, 617
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 2 cut(s) 5, 215
BsoBI CYCGRG 1 cut(s) 608
Bsp143I GATC 3 cut(s) 168, 461, 511
Bsp19I CCATGG 2 cut(s) 290, 501
BspACI CCGC 6 cut(s) 39, 54, 155, 230, 454, 707
BspANI GGCC 2 cut(s) 5, 215
BspCNI CTCAG 2 cut(s) 427, 441
BspLI GGNNCC 2 cut(s) 621, 678
BspMAI CTGCAG 1 cut(s) 333
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 210, 225, 290, 501
BssMI GATC 3 cut(s) 168, 461, 511
BssT1I CCWWGG 2 cut(s) 290, 501
Bst4CI ACNGT 3 cut(s) 11, 449, 493
Bst6I CTCTTC 2 cut(s) 58, 246
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 414, 428, 795
BstDSI CCRYGG 2 cut(s) 290, 501
BstF5I GGATG 3 cut(s) 238, 586, 766
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 171, 464, 514
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 168, 461, 511
BstMCI CGRYCG 1 cut(s) 216
BstMWI GCNNNNNNNGC 6 cut(s) 51, 221, 236, 319, 328, 410
BstSCI CCNGG 2 cut(s) 210, 615
BstSFI CTRYAG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BstZI CGGCCG 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 428
BsuRI GGCC 2 cut(s) 5, 215
BtgI CCRYGG 2 cut(s) 290, 501
BtsCI GGATG 3 cut(s) 238, 586, 766
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 215
Csp6I GTAC 3 cut(s) 15, 560, 620
CviAII CATG 5 cut(s) 247, 291, 410, 478, 502
CviJI RGCY 8 cut(s) 5, 215, 239, 313, 328, 468, 649, 731
CviKI_1 RGCY 8 cut(s) 5, 215, 239, 313, 328, 468, 649, 731
CviQI GTAC 3 cut(s) 15, 560, 620
DdeI CTNAG 3 cut(s) 414, 428, 795
DpnI GATC 3 cut(s) 170, 463, 513
DpnII GATC 3 cut(s) 168, 461, 511
DraIII CACNNNGTG 1 cut(s) 520
EaeI YGGCCR 2 cut(s) 3, 213
EagI CGGCCG 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 58, 246
EarI CTCTTC 2 cut(s) 58, 246
EciI GGCGGA 2 cut(s) 170, 245
EclXI CGGCCG 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 290, 501
Eco52I CGGCCG 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 290, 501
EcoT22I ATGCAT 1 cut(s) 768
ErhI CCWWGG 2 cut(s) 290, 501
FaeI CATG 5 cut(s) 250, 294, 413, 481, 505
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 5 cut(s) 246, 290, 409, 477, 501
Fnu4HI GCNGC 3 cut(s) 55, 329, 454
FokI GGATG 3 cut(s) 245, 573, 753
Fsp4HI GCNGC 3 cut(s) 55, 329, 454
FspBI CTAG 4 cut(s) 18, 405, 465, 728
GlaI GCGC 1 cut(s) 46
GluI GCNGC 3 cut(s) 55, 329, 454
HaeIII GGCC 2 cut(s) 5, 215
HapII CCGG 5 cut(s) 212, 216, 563, 590, 617
HhaI GCGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 250, 294, 413, 481, 505
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 7 cut(s) 29, 84, 160, 336, 631, 661, 789
HpaII CCGG 5 cut(s) 212, 216, 563, 590, 617
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 28, 83, 139, 417
Hpy188III TCNNGA 4 cut(s) 271, 366, 379, 608
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 3 cut(s) 11, 176, 453
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 3 cut(s) 11, 449, 493
HpyCH4V TGCA 3 cut(s) 331, 598, 766
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 221, 236, 319, 328, 410
HpyF3I CTNAG 3 cut(s) 414, 428, 795
Hsp92II CATG 5 cut(s) 250, 294, 413, 481, 505
HspAI GCGC 1 cut(s) 45
KpnI GGTACC 1 cut(s) 623
Kzo9I GATC 3 cut(s) 168, 461, 511
LguI GCTCTTC 1 cut(s) 246
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 1 cut(s) 775
MaeI CTAG 4 cut(s) 18, 405, 465, 728
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 170, 463, 513
MboI GATC 3 cut(s) 168, 461, 511
MflI RGATCY 1 cut(s) 461
MluCI AATT 1 cut(s) 670
MlyI GAGTC 5 cut(s) 38, 93, 154, 345, 798
MnlI CCTC 6 cut(s) 235, 267, 275, 400, 437, 731
Mph1103I ATGCAT 1 cut(s) 768
MroXI GAANNNNTTC 2 cut(s) 240, 422
MseI TTAA 3 cut(s) 444, 683, 744
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 5 cut(s) 212, 216, 563, 590, 617
MspR9I CCNGG 2 cut(s) 212, 617
Mva1269I GAATGC 1 cut(s) 773
MwoI GCNNNNNNNGC 6 cut(s) 51, 221, 236, 319, 328, 410
NciI CCSGG 2 cut(s) 212, 617
NcoI CCATGG 2 cut(s) 290, 501
NdeII GATC 3 cut(s) 168, 461, 511
NlaIII CATG 5 cut(s) 250, 294, 413, 481, 505
NlaIV GGNNCC 2 cut(s) 621, 678
NmeAIII GCCGAG 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 773
PdmI GAANNNNTTC 2 cut(s) 240, 422
PfeI GAWTC 2 cut(s) 631, 661
PkrI GCNGC 3 cut(s) 56, 330, 455
PleI GAGTC 5 cut(s) 37, 92, 154, 344, 797
PpsI GAGTC 5 cut(s) 37, 92, 154, 344, 797
PspN4I GGNNCC 2 cut(s) 621, 678
PsrI GAACNNNNNNTAC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 333
PsuI RGATCY 1 cut(s) 461
RsaI GTAC 3 cut(s) 16, 561, 621
RsaNI GTAC 3 cut(s) 15, 560, 620
RseI CAYNNNNRTG 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 444, 683, 744
SatI GCNGC 3 cut(s) 55, 329, 454
Sau3AI GATC 3 cut(s) 168, 461, 511
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 5 cut(s) 38, 93, 154, 345, 798
ScrFI CCNGG 2 cut(s) 212, 617
SetI ASST 6 cut(s) 241, 315, 392, 651, 723, 733
SfaNI GCATC 1 cut(s) 775
SfcI CTRYAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 1 cut(s) 670
SsiI CCGC 6 cut(s) 39, 54, 155, 230, 454, 707
SspMI CTAG 4 cut(s) 18, 405, 465, 728
StyD4I CCNGG 2 cut(s) 210, 615
StyI CCWWGG 2 cut(s) 290, 501
TaaI ACNGT 3 cut(s) 11, 449, 493
TaqI TCGA 3 cut(s) 171, 270, 659
TasI AATT 1 cut(s) 670
TatI WGTACW 1 cut(s) 14
TauI GCSGC 2 cut(s) 57, 456
TfiI GAWTC 2 cut(s) 631, 661
Tru1I TTAA 3 cut(s) 444, 683, 744
Tru9I TTAA 3 cut(s) 444, 683, 744
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 7 cut(s) 159, 204, 215, 249, 645, 723, 762
TspGWI ACGGA 1 cut(s) 657
XmnI GAANNNNTTC 2 cut(s) 240, 422
XspI CTAG 4 cut(s) 18, 405, 465, 728
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.