Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003904

Physical Location & Seq

Genomic Coordinates Reverse (-)

56529888 .. 56531280

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0429500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGTCCTCTGTGATTGAAAGAAAGGGATCAGGGAAGCTAGGCTGGAGAGAGCAAACCCTAGCCTCCATGTCTGTACCTCCTTCTCCTCTGATTGCCCTAGTTGGGATAGTCGTGTTGTTATTGTACCTTTCGTCCTACTCAAATTACAGGGCCCAGATGTATAAGACCCAAGCTAGTTTCAATCTTTTTCTCTTGTTTTTGCCTATGATATTGATATTCCTGGCCTACTACATGACCAAGTATGGGAGGTTTATGAGTCCGACGACGAATGAGAAGGTGGTGAATGCTCAGTCCGGCGCGTCGCCTTGGGGGGTTAGTTTGTTCCTGGGGCTCATGCTGATGTTGGTCTCCTATCAGTCTTATTTTCAGTCCAAGTGGTGGCCGCACTGGCGTGCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

134

Amino Acids

15.34

Weight (kDa)

9.82

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19000 AT1G19000 AT1G74840 AT1G74840
fragaria_vesca	FvH4_2g31190 FvH4_5g16170 FvH4_5g16170
malus_domestica	MD01G1036800.v1.1 MD06G1183300.v1.1 MD14G1189300.v1.1
prunus_persica	Prupe.1G413400_v2.0.a1 Prupe.5G182000_v2.0.a1
pyrus_communis	pycom06g16230 pycom14g15700
rosa_chinensis	RchiOBHm_Chr7g0179981
rosa_laevigata	RLG00000005305 RLG00000015426
rosa_multiflora	Rmu_co8001466.1_g000001 Rmu_co8001468.1_g000001 Rmu_sc0003965.1_g000004 Rmu_ssc0000119.1_g000011
rosa_roxburghii	Rroxscaffold_3G00273260 Rroxscaffold_7G00211840 Rroxscaffold_7G00216350
rosa_rugosa	Rorug06G0429500
rosa_samantha	Rh6AG015400 Rh6BG013600 Rh6CG010700 Rh6DG011900 Rh7AG030000 Rh7BG029300 Rh7CG031000 Rh7DG030300
rosa_wichuraiana	Rw7G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccII	CGCG	1 cut(s)	302
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	383
AfaI	GTAC	2 cut(s)	78, 128
AfiI	CCNNNNNNNGG	3 cut(s)	105, 246, 381
AgsI	TTSAA	2 cut(s)	20, 184
AjnI	CCWGG	2 cut(s)	222, 327
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	2 cut(s)	40, 176
AluI	AGCT	2 cut(s)	40, 176
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	3 cut(s)	153, 225, 383
ApaI	GGGCCC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	153, 154
AsuHPI	GGTGA	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	157, 336
BciT130I	CCWGG	2 cut(s)	224, 329
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	4 cut(s)	41, 62, 101, 177
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	224, 329
BmgT120I	GGNCC	2 cut(s)	153, 154
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	224, 329
BpmI	CTGGAG	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	308, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 246, 381
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	224, 329
BseDI	CCNNGG	2 cut(s)	308, 328
BseLI	CCNNNNNNNGG	3 cut(s)	105, 246, 381
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	155, 227, 385
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	3 cut(s)	105, 246, 381
BsmAI	GTCTC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	155, 227, 385
Bso31I	GGTCTC	1 cut(s)	355
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	157, 336
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	155, 227, 385
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	308, 328
BssMI	GATC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	224, 329
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	224, 329
BstSCI	CCNGG	2 cut(s)	222, 327
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	155, 227, 385
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	153, 154
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	77, 127
CviAII	CATG	3 cut(s)	70, 235, 337
CviJI	RGCY	8 cut(s)	40, 45, 65, 155, 176, 227, 334, 385
CviKI_1	RGCY	8 cut(s)	40, 45, 65, 155, 176, 227, 334, 385
CviQI	GTAC	2 cut(s)	77, 127
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	2 cut(s)	157, 336
Eco31I	GGTCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	222, 327
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	2 cut(s)	157, 336
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	73, 238, 340
FaiI	YATR	7 cut(s)	71, 165, 209, 236, 246, 257, 338
FatI	CATG	3 cut(s)	69, 234, 336
Fnu4HI	GCNGC	1 cut(s)	386
FriOI	GRGCYC	2 cut(s)	157, 336
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	4 cut(s)	41, 62, 101, 177
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	155, 227, 385
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	73, 238, 340
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	5, 259
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	93, 264
Hpy99I	CGWCG	3 cut(s)	268, 271, 307
HpyAV	CCTTC	2 cut(s)	93, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	73, 238, 340
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	29
MaeI	CTAG	4 cut(s)	41, 62, 101, 177
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	157, 336
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	14, 268
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	19, 76, 90, 99, 243
MslI	CAYNNNNRTG	2 cut(s)	341, 393
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	224, 329
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	2 cut(s)	224, 329
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	73, 238, 340
NlaIV	GGNNCC	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	393
PctI	GAATGC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	13, 267
PpsI	GAGTC	2 cut(s)	13, 267
Psp6I	CCWGG	2 cut(s)	222, 327
PspGI	CCWGG	2 cut(s)	222, 327
PspN4I	GGNNCC	1 cut(s)	155
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	153, 154
RsaI	GTAC	2 cut(s)	78, 128
RsaNI	GTAC	2 cut(s)	77, 127
RseI	CAYNNNNRTG	2 cut(s)	341, 393
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	2 cut(s)	153, 154
SchI	GAGTC	2 cut(s)	14, 268
ScrFI	CCNGG	2 cut(s)	224, 329
SduI	GDGCHC	2 cut(s)	157, 336
SetI	ASST	6 cut(s)	42, 82, 132, 178, 254, 282
SmiMI	CAYNNNNRTG	2 cut(s)	341, 393
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	4 cut(s)	41, 62, 101, 177
StyD4I	CCNGG	2 cut(s)	222, 327
StyI	CCWWGG	1 cut(s)	308
TasI	AATT	1 cut(s)	145
TauI	GCSGC	1 cut(s)	388
TscAI	CASTG	1 cut(s)	395
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	381
XspI	CTAG	4 cut(s)	41, 62, 101, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.