Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000119.1

Orthogroup ID

OG0003904

Physical Location & Seq

Genomic Coordinates Forward (+)

42394 .. 44258

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000119.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgtcctccggcacttgctccaccaccgtcgatcccgccgccggcgcggccaaagagttcatgctgttcggcgtgcgcgtggtggttgactccatgaggaagagcgtcagtctcaataatctctcgcagtacgaacaccctaccgaggcctccaacaacaacaacaataacagctccggcgccggcgccggcgccggcaaggacgacgccgtcgctggttacgtatctgagaacgacgtcgttcacaattctggcgggaatcgcgagcgcgaacgcaagcgaggagttccgtggacggaggatgagcacaagctatttctgcttggattgcagaaagtagggaaaggagattggagagggatctcaaggaactatgtcaagactcgcacgccgactcaggtggctagccatgctcagaagtactttctccgccggagcaaccacaatcgccgccgccgcagatctagcctatttgatatcaccaccgattcggtccctgcaactccaatggaagaagagcaagtacatcatcaagataacacatctcacctgcactcgttgccaccacctccaccacaatccgaatcttgcaatcctaatggattttcgatggtgccaatttttccaatgaacgtaggtccagctgttgtacaagtcgccactaagaaaccaacaggaaatctaaaactgggacaaggaaatccggggtgtccttcccctaagatcgtccatccagttgctctgcactcggcccctcatgctacagaagcatctgatctaaacttgaatgcgacaatcgacacatcgcctctagctctcaacctctccttgtcaatgaactcgagggaatcatcgtcaaggcattcggctttccaagcaatgtcaagcttcggcaatggggacaacatcatcactgttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

307

Amino Acids

33.08

Weight (kDa)

8.99

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19000 AT1G19000 AT1G74840 AT1G74840
fragaria_vesca	FvH4_2g31190 FvH4_5g16170 FvH4_5g16170
malus_domestica	MD01G1036800.v1.1 MD06G1183300.v1.1 MD14G1189300.v1.1
prunus_persica	Prupe.1G413400_v2.0.a1 Prupe.5G182000_v2.0.a1
pyrus_communis	pycom06g16230 pycom14g15700
rosa_chinensis	RchiOBHm_Chr7g0179981
rosa_laevigata	RLG00000005305 RLG00000015426
rosa_multiflora	Rmu_co8001466.1_g000001 Rmu_co8001468.1_g000001 Rmu_sc0003965.1_g000004 Rmu_ssc0000119.1_g000011
rosa_roxburghii	Rroxscaffold_3G00273260 Rroxscaffold_7G00211840 Rroxscaffold_7G00216350
rosa_rugosa	Rorug06G0429500
rosa_samantha	Rh6AG015400 Rh6BG013600 Rh6CG010700 Rh6DG011900 Rh7AG030000 Rh7BG029300 Rh7CG031000 Rh7DG030300
rosa_wichuraiana	Rw7G002410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	558
AasI	GACNNNNNNGTC	1 cut(s)	209
AatII	GACGTC	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	4 cut(s)	179, 185, 191, 613
AccII	CGCG	4 cut(s)	47, 78, 264, 270
AciI	CCGC	8 cut(s)	36, 39, 47, 255, 430, 451, 454, 457
AclWI	GGATC	2 cut(s)	26, 368
AcoI	YGGCCR	1 cut(s)	48
AcyI	GRCGYC	5 cut(s)	180, 186, 192, 207, 237
AfaI	GTAC	4 cut(s)	131, 422, 525, 651
AfiI	CCNNNNNNNGG	2 cut(s)	41, 145
AgsI	TTSAA	1 cut(s)	787
AluBI	AGCT	5 cut(s)	174, 313, 644, 815, 888
AluI	AGCT	5 cut(s)	174, 313, 644, 815, 888
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	26, 368
Ama87I	CYCGRG	1 cut(s)	841
AoxI	GGCC	3 cut(s)	48, 147, 750
AspLEI	GCGC	6 cut(s)	47, 78, 182, 188, 194, 270
AspS9I	GGNCC	3 cut(s)	493, 638, 751
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	2 cut(s)	472, 539
AsuNHI	GCTAGC	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	841
AvaII	GGWCC	2 cut(s)	493, 638
BanI	GGYRCC	4 cut(s)	179, 185, 191, 613
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
Bbv12I	GWGCWC	1 cut(s)	309
BccI	CCATC	2 cut(s)	604, 738
BceAI	ACGGC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	3 cut(s)	405, 465, 812
BfmI	CTRYAG	1 cut(s)	762
BfoI	RGCGCY	3 cut(s)	183, 189, 195
BfuAI	ACCTGC	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	5 cut(s)	39, 48, 451, 454, 457
BlsI	GCNGC	5 cut(s)	40, 49, 452, 455, 458
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	493, 638
BmeT110I	CYCGRG	1 cut(s)	841
BmgT120I	GGNCC	3 cut(s)	493, 638, 751
BmiI	GGNNCC	6 cut(s)	181, 187, 193, 495, 615, 753
BmrFI	CCNGG	1 cut(s)	705
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	1 cut(s)	779
BmtI	GCTAGC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	223
BsaHI	GRCGYC	5 cut(s)	180, 186, 192, 207, 237
BsaJI	CCNNGG	3 cut(s)	144, 290, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 145
Bse118I	RCCGGY	4 cut(s)	41, 182, 188, 194
Bse1I	ACTGG	2 cut(s)	693, 734
Bse3DI	GCAATG	2 cut(s)	885, 901
BseDI	CCNNGG	3 cut(s)	144, 290, 704
BseGI	GGATG	2 cut(s)	307, 730
BseLI	CCNNNNNNNGG	2 cut(s)	41, 145
BseMI	GCAATG	2 cut(s)	885, 901
BseMII	CTCAG	3 cut(s)	219, 410, 428
BseNI	ACTGG	2 cut(s)	693, 734
BseRI	GAGGAG	1 cut(s)	297
BsgI	GTGCAG	2 cut(s)	536, 728
Bsh1236I	CGCG	4 cut(s)	47, 78, 264, 270
BshFI	GGCC	3 cut(s)	50, 149, 752
BshNI	GGYRCC	4 cut(s)	179, 185, 191, 613
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	841
BsiSI	CCGG	8 cut(s)	9, 42, 177, 183, 189, 195, 433, 704
BslFI	GGGAC	3 cut(s)	479, 705, 914
BslI	CCNNNNNNNGG	2 cut(s)	41, 145
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	3 cut(s)	479, 705, 914
BsmI	GAATGC	2 cut(s)	793, 862
BsnI	GGCC	3 cut(s)	50, 149, 752
BsoBI	CYCGRG	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	5 cut(s)	31, 360, 461, 723, 775
Bsp68I	TCGCGA	1 cut(s)	264
BspACI	CCGC	8 cut(s)	36, 39, 47, 255, 430, 451, 454, 457
BspANI	GGCC	3 cut(s)	50, 149, 752
BspCNI	CTCAG	3 cut(s)	220, 409, 427
BspFNI	CGCG	4 cut(s)	47, 78, 264, 270
BspLI	GGNNCC	6 cut(s)	181, 187, 193, 495, 615, 753
BspMI	ACCTGC	1 cut(s)	558
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	26, 368
BspQI	GCTCTTC	2 cut(s)	95, 510
BspT107I	GGYRCC	4 cut(s)	179, 185, 191, 613
BsrDI	GCAATG	2 cut(s)	885, 901
BsrFI	RCCGGY	4 cut(s)	41, 182, 188, 194
BsrGI	TGTACA	1 cut(s)	649
BsrI	ACTGG	2 cut(s)	693, 734
BssAI	RCCGGY	4 cut(s)	41, 182, 188, 194
BssECI	CCNNGG	3 cut(s)	144, 290, 704
BssMI	GATC	5 cut(s)	31, 360, 461, 723, 775
BssNI	GRCGYC	5 cut(s)	180, 186, 192, 207, 237
Bst4CI	ACNGT	2 cut(s)	28, 916
Bst6I	CTCTTC	2 cut(s)	95, 510
BstACI	GRCGYC	5 cut(s)	180, 186, 192, 207, 237
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstAUI	TGTACA	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	9 cut(s)	43, 74, 184, 190, 196, 266, 278, 389, 406
BstDEI	CTNAG	5 cut(s)	228, 396, 414, 663, 720
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	307, 730
BstFNI	CGCG	4 cut(s)	47, 78, 264, 270
BstH2I	RGCGCY	3 cut(s)	183, 189, 195
BstHHI	GCGC	6 cut(s)	47, 78, 182, 188, 194, 270
BstKTI	GATC	5 cut(s)	34, 363, 464, 726, 778
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	31, 360, 461, 723, 775
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	1 cut(s)	762
BstSNI	TACGTA	1 cut(s)	223
BstUI	CGCG	4 cut(s)	47, 78, 264, 270
BstX2I	RGATCY	2 cut(s)	360, 461
BstYI	RGATCY	2 cut(s)	360, 461
BsuRI	GGCC	3 cut(s)	50, 149, 752
BtgI	CCRYGG	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	789
BtsCI	GGATG	2 cut(s)	307, 730
BtsIMutI	CAGTG	1 cut(s)	912
BtuMI	TCGCGA	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	9 cut(s)	43, 74, 184, 190, 196, 266, 278, 389, 406
CfoI	GCGC	6 cut(s)	47, 78, 182, 188, 194, 270
Cfr10I	RCCGGY	4 cut(s)	41, 182, 188, 194
Cfr13I	GGNCC	3 cut(s)	493, 638, 751
CseI	GACGC	2 cut(s)	94, 215
Csp6I	GTAC	4 cut(s)	130, 421, 524, 650
CviAII	CATG	4 cut(s)	61, 94, 410, 758
CviQI	GTAC	4 cut(s)	130, 421, 524, 650
DdeI	CTNAG	5 cut(s)	228, 396, 414, 663, 720
DinI	GGCGCC	3 cut(s)	181, 187, 193
DpnI	GATC	5 cut(s)	33, 362, 463, 725, 777
DpnII	GATC	5 cut(s)	31, 360, 461, 723, 775
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	95, 510
EarI	CTCTTC	2 cut(s)	95, 510
EciI	GGCGGA	1 cut(s)	419
Eco105I	TACGTA	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	149
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	493, 638
Eco88I	CYCGRG	1 cut(s)	841
EcoRV	GATATC	1 cut(s)	478
EgeI	GGCGCC	3 cut(s)	181, 187, 193
EheI	GGCGCC	3 cut(s)	181, 187, 193
FaeI	CATG	4 cut(s)	64, 97, 413, 761
FaiI	YATR	5 cut(s)	62, 95, 375, 411, 759
FaqI	GGGAC	3 cut(s)	479, 705, 914
FatI	CATG	4 cut(s)	60, 93, 409, 757
FauI	CCCGC	2 cut(s)	43, 248
Fnu4HI	GCNGC	5 cut(s)	39, 48, 451, 454, 457
FokI	GGATG	2 cut(s)	314, 717
Fsp4HI	GCNGC	5 cut(s)	39, 48, 451, 454, 457
FspBI	CTAG	3 cut(s)	405, 465, 812
GlaI	GCGC	6 cut(s)	46, 77, 181, 187, 193, 269
GluI	GCNGC	5 cut(s)	39, 48, 451, 454, 457
HaeII	RGCGCY	3 cut(s)	183, 189, 195
HaeIII	GGCC	3 cut(s)	50, 149, 752
HapII	CCGG	8 cut(s)	9, 42, 177, 183, 189, 195, 433, 704
HgaI	GACGC	2 cut(s)	94, 215
HhaI	GCGC	6 cut(s)	47, 78, 182, 188, 194, 270
Hin1I	GRCGYC	5 cut(s)	180, 186, 192, 207, 237
Hin1II	CATG	4 cut(s)	64, 97, 413, 761
Hin6I	GCGC	6 cut(s)	45, 76, 180, 186, 192, 268
HinP1I	GCGC	6 cut(s)	45, 76, 180, 186, 192, 268
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	7 cut(s)	89, 259, 382, 394, 488, 584, 848
HpaII	CCGG	8 cut(s)	9, 42, 177, 183, 189, 195, 433, 704
HphI	GGTGA	2 cut(s)	472, 539
Hpy166II	GTNNAC	3 cut(s)	88, 244, 294
Hpy188I	TCNGA	4 cut(s)	229, 417, 583, 775
Hpy188III	TCNNGA	3 cut(s)	263, 379, 533
Hpy8I	GTNNAC	3 cut(s)	88, 244, 294
Hpy99I	CGWCG	5 cut(s)	32, 209, 215, 239, 242
HpyAV	CCTTC	1 cut(s)	723
HpyCH4III	ACNGT	2 cut(s)	28, 916
HpyCH4IV	ACGT	3 cut(s)	222, 237, 633
HpyCH4V	TGCA	5 cut(s)	331, 500, 553, 591, 745
HpyF3I	CTNAG	5 cut(s)	228, 396, 414, 663, 720
HpySE526I	ACGT	3 cut(s)	222, 237, 633
Hsp92I	GRCGYC	5 cut(s)	180, 186, 192, 207, 237
Hsp92II	CATG	4 cut(s)	64, 97, 413, 761
HspAI	GCGC	6 cut(s)	45, 76, 180, 186, 192, 268
KasI	GGCGCC	3 cut(s)	179, 185, 191
KroI	GCCGGC	4 cut(s)	41, 182, 188, 194
KroNI	GCCGGC	4 cut(s)	43, 184, 190, 196
Kzo9I	GATC	5 cut(s)	31, 360, 461, 723, 775
LguI	GCTCTTC	2 cut(s)	95, 510
LmnI	GCTCC	3 cut(s)	23, 179, 435
LweI	GCATC	1 cut(s)	779
MaeI	CTAG	3 cut(s)	405, 465, 812
MaeII	ACGT	3 cut(s)	222, 237, 633
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	5 cut(s)	33, 362, 463, 725, 777
MboI	GATC	5 cut(s)	31, 360, 461, 723, 775
MboII	GAAGA	3 cut(s)	112, 524, 527
MflI	RGATCY	2 cut(s)	360, 461
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	247, 618
Mly113I	GGCGCC	3 cut(s)	180, 186, 192
MlyI	GAGTC	3 cut(s)	83, 376, 388
MmeI	TCCRAC	1 cut(s)	177
MreI	CGCCGGCG	3 cut(s)	41, 182, 188
MroNI	GCCGGC	4 cut(s)	41, 182, 188, 194
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	8 cut(s)	9, 42, 177, 183, 189, 195, 433, 704
MspR9I	CCNGG	1 cut(s)	705
Mva1269I	GAATGC	2 cut(s)	793, 862
MvnI	CGCG	4 cut(s)	47, 78, 264, 270
NaeI	GCCGGC	4 cut(s)	43, 184, 190, 196
NarI	GGCGCC	3 cut(s)	180, 186, 192
NciI	CCSGG	1 cut(s)	705
NdeII	GATC	5 cut(s)	31, 360, 461, 723, 775
NgoMIV	GCCGGC	4 cut(s)	41, 182, 188, 194
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	64, 97, 413, 761
NlaIV	GGNNCC	6 cut(s)	181, 187, 193, 495, 615, 753
NmeAIII	GCCGAG	1 cut(s)	728
NruI	TCGCGA	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	841
PaqCI	CACCTGC	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	149
PciSI	GCTCTTC	2 cut(s)	95, 510
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 219
PctI	GAATGC	2 cut(s)	793, 862
PdiI	GCCGGC	4 cut(s)	43, 184, 190, 196
PfeI	GAWTC	4 cut(s)	259, 488, 584, 848
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	5 cut(s)	40, 49, 452, 455, 458
PleI	GAGTC	3 cut(s)	83, 376, 388
PluTI	GGCGCC	3 cut(s)	183, 189, 195
PpsI	GAGTC	3 cut(s)	83, 376, 388
Ppu21I	YACGTR	1 cut(s)	223
PspN4I	GGNNCC	6 cut(s)	181, 187, 193, 495, 615, 753
PspPI	GGNCC	3 cut(s)	493, 638, 751
PspXI	VCTCGAGB	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	360, 461
PsyI	GACNNNGTC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	644
RruI	TCGCGA	1 cut(s)	264
RsaI	GTAC	4 cut(s)	131, 422, 525, 651
RsaNI	GTAC	4 cut(s)	130, 421, 524, 650
SapI	GCTCTTC	2 cut(s)	95, 510
SatI	GCNGC	5 cut(s)	39, 48, 451, 454, 457
Sau3AI	GATC	5 cut(s)	31, 360, 461, 723, 775
Sau96I	GGNCC	3 cut(s)	493, 638, 751
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	3 cut(s)	83, 376, 388
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	779
SfcI	CTRYAG	1 cut(s)	762
SfoI	GGCGCC	3 cut(s)	181, 187, 193
Sfr274I	CTCGAG	1 cut(s)	841
SgrAI	CRCCGGYG	3 cut(s)	41, 182, 188
SinI	GGWCC	2 cut(s)	493, 638
SlaI	CTCGAG	1 cut(s)	841
SmlI	CTYRAG	2 cut(s)	364, 841
SmoI	CTYRAG	2 cut(s)	364, 841
SnaBI	TACGTA	1 cut(s)	223
Sse9I	AATT	2 cut(s)	247, 618
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	8 cut(s)	36, 39, 47, 255, 430, 451, 454, 457
SspDI	GGCGCC	3 cut(s)	179, 185, 191
SspMI	CTAG	3 cut(s)	405, 465, 812
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	703
TaaI	ACNGT	2 cut(s)	28, 916
TaiI	ACGT	3 cut(s)	225, 240, 636
TaqI	TCGA	4 cut(s)	30, 608, 798, 842
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	2 cut(s)	247, 618
TatI	WGTACW	3 cut(s)	420, 523, 649
TauI	GCSGC	5 cut(s)	41, 50, 453, 456, 459
TfiI	GAWTC	4 cut(s)	259, 488, 584, 848
TscAI	CASTG	1 cut(s)	919
TspDTI	ATGAA	3 cut(s)	49, 644, 851
TspGWI	ACGGA	2 cut(s)	279, 311
TspRI	CASTG	1 cut(s)	919
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	493, 638
XhoI	CTCGAG	1 cut(s)	841
XspI	CTAG	3 cut(s)	405, 465, 812
ZraI	GACGTC	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.