26S proteasome non-ATPase regulatory subunit 3 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20200 AT1G75990 |
| fragaria_vesca | FvH4_2g15510 FvH4_2g15510 |
| malus_domestica | MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1 |
| prunus_persica | Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1 |
| pyrus_communis | pycom05g11770 pycom06g20010 pycom10g10860 |
| rosa_chinensis | RchiOBHm_Chr6g0278511 |
| rosa_laevigata | RLG00000007962 RLG00000013222 |
| rosa_multiflora | Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320 |
| rosa_rugosa | Rorug06G0117600 |
| rosa_samantha | Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300 |
| rosa_wichuraiana | Rw0G003080 Rw4G016480 Rw6G019790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 349 |
| Acc65I | GGTACC | 1 cut(s) | 723 |
| AccB1I | GGYRCC | 2 cut(s) | 682, 723 |
| AccI | GTMKAC | 1 cut(s) | 868 |
| AccII | CGCG | 2 cut(s) | 546, 1197 |
| AciI | CCGC | 6 cut(s) | 546, 797, 956, 1054, 1081, 1169 |
| AclWI | GGATC | 4 cut(s) | 225, 238, 829, 842 |
| AcoI | YGGCCR | 2 cut(s) | 309, 798 |
| AcsI | RAATTY | 2 cut(s) | 79, 540 |
| AcuI | CTGAAG | 3 cut(s) | 411, 776, 814 |
| AfaI | GTAC | 4 cut(s) | 404, 550, 725, 751 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 793 |
| AgeI | ACCGGT | 1 cut(s) | 524 |
| AgsI | TTSAA | 3 cut(s) | 85, 705, 1297 |
| AjiI | CACGTC | 1 cut(s) | 13 |
| AjnI | CCWGG | 4 cut(s) | 207, 226, 800, 993 |
| Alw21I | GWGCWC | 2 cut(s) | 198, 351 |
| Alw26I | GTCTC | 3 cut(s) | 161, 449, 1249 |
| AlwI | GGATC | 4 cut(s) | 225, 238, 829, 842 |
| Ama87I | CYCGRG | 2 cut(s) | 350, 737 |
| AoxI | GGCC | 4 cut(s) | 309, 798, 924, 1188 |
| ApeKI | GCWGC | 3 cut(s) | 95, 320, 818 |
| ApoI | RAATTY | 2 cut(s) | 79, 540 |
| AsiGI | ACCGGT | 1 cut(s) | 524 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 609 |
| Asp718I | GGTACC | 1 cut(s) | 723 |
| AspS9I | GGNCC | 2 cut(s) | 465, 925 |
| AsuHPI | GGTGA | 4 cut(s) | 175, 284, 539, 890 |
| AvaI | CYCGRG | 2 cut(s) | 350, 737 |
| AvaII | GGWCC | 1 cut(s) | 465 |
| AxyI | CCTNAGG | 1 cut(s) | 267 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1075, 1108 |
| BamHI | GGATCC | 2 cut(s) | 230, 834 |
| BanI | GGYRCC | 2 cut(s) | 682, 723 |
| BanII | GRGCYC | 1 cut(s) | 351 |
| BauI | CACGAG | 1 cut(s) | 144 |
| BbsI | GAAGAC | 1 cut(s) | 1455 |
| Bbv12I | GWGCWC | 2 cut(s) | 198, 351 |
| BbvCI | CCTCAGC | 2 cut(s) | 1136, 1443 |
| BbvI | GCAGC | 3 cut(s) | 107, 307, 830 |
| BciT130I | CCWGG | 4 cut(s) | 209, 228, 802, 995 |
| BclI | TGATCA | 2 cut(s) | 391, 655 |
| BcoDI | GTCTC | 3 cut(s) | 161, 449, 1249 |
| BfmI | CTRYAG | 3 cut(s) | 162, 342, 813 |
| BfuAI | ACCTGC | 1 cut(s) | 349 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 308 |
| BglII | AGATCT | 1 cut(s) | 354 |
| BisI | GCNGC | 4 cut(s) | 96, 321, 798, 819 |
| BlpI | GCTNAGC | 1 cut(s) | 1431 |
| BlsI | GCNGC | 4 cut(s) | 97, 322, 799, 820 |
| Bme1390I | CCNGG | 4 cut(s) | 209, 228, 802, 995 |
| Bme18I | GGWCC | 1 cut(s) | 465 |
| BmeT110I | CYCGRG | 2 cut(s) | 350, 737 |
| BmgBI | CACGTC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 2 cut(s) | 465, 925 |
| BmiI | GGNNCC | 5 cut(s) | 225, 232, 684, 725, 836 |
| BmrFI | CCNGG | 4 cut(s) | 209, 228, 802, 995 |
| BmrI | ACTGGG | 2 cut(s) | 120, 1266 |
| BmsI | GCATC | 7 cut(s) | 343, 491, 574, 1156, 1185, 1201, 1226 |
| BmuI | ACTGGG | 2 cut(s) | 120, 1266 |
| BpiI | GAAGAC | 1 cut(s) | 1455 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1342, 1374 |
| Bpu10I | CCTNAGC | 3 cut(s) | 170, 1136, 1443 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1431 |
| BpuEI | CTTGAG | 4 cut(s) | 431, 1005, 1087, 1285 |
| Bsa29I | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| BsaAI | YACGTR | 1 cut(s) | 629 |
| BsaI | GGTCTC | 1 cut(s) | 1249 |
| BsaWI | WCCGGW | 1 cut(s) | 524 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 793 |
| Bse118I | RCCGGY | 2 cut(s) | 185, 524 |
| Bse1I | ACTGG | 3 cut(s) | 115, 1078, 1261 |
| Bse21I | CCTNAGG | 1 cut(s) | 267 |
| Bse3DI | GCAATG | 1 cut(s) | 435 |
| BseBI | CCWGG | 4 cut(s) | 209, 228, 802, 995 |
| BseCI | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| BseGI | GGATG | 1 cut(s) | 1241 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 793 |
| BseMI | GCAATG | 1 cut(s) | 435 |
| BseMII | CTCAG | 4 cut(s) | 20, 943, 1127, 1434 |
| BseNI | ACTGG | 3 cut(s) | 115, 1078, 1261 |
| BseRI | GAGGAG | 1 cut(s) | 1411 |
| BseXI | GCAGC | 3 cut(s) | 107, 307, 830 |
| BseYI | CCCAGC | 2 cut(s) | 595, 874 |
| Bsh1236I | CGCG | 2 cut(s) | 546, 1197 |
| BshFI | GGCC | 4 cut(s) | 311, 800, 926, 1190 |
| BshNI | GGYRCC | 2 cut(s) | 682, 723 |
| BshTI | ACCGGT | 1 cut(s) | 524 |
| BshVI | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| BsiHKAI | GWGCWC | 2 cut(s) | 198, 351 |
| BsiHKCI | CYCGRG | 2 cut(s) | 350, 737 |
| BsiSI | CCGG | 2 cut(s) | 186, 525 |
| BslFI | GGGAC | 2 cut(s) | 983, 1274 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 793 |
| BsmAI | GTCTC | 3 cut(s) | 161, 449, 1249 |
| BsmBI | CGTCTC | 2 cut(s) | 161, 449 |
| BsmFI | GGGAC | 2 cut(s) | 983, 1274 |
| BsnI | GGCC | 4 cut(s) | 311, 800, 926, 1190 |
| Bso31I | GGTCTC | 1 cut(s) | 1249 |
| BsoBI | CYCGRG | 2 cut(s) | 350, 737 |
| Bsp1286I | GDGCHC | 2 cut(s) | 198, 351 |
| Bsp143I | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1431 |
| BspACI | CCGC | 6 cut(s) | 546, 797, 956, 1054, 1081, 1169 |
| BspANI | GGCC | 4 cut(s) | 311, 800, 926, 1190 |
| BspCNI | CTCAG | 4 cut(s) | 19, 942, 1128, 1435 |
| BspDI | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| BspFNI | CGCG | 2 cut(s) | 546, 1197 |
| BspLI | GGNNCC | 5 cut(s) | 225, 232, 684, 725, 836 |
| BspMAI | CTGCAG | 1 cut(s) | 346 |
| BspMI | ACCTGC | 1 cut(s) | 349 |
| BspPI | GGATC | 4 cut(s) | 225, 238, 829, 842 |
| BspQI | GCTCTTC | 1 cut(s) | 1416 |
| BspT107I | GGYRCC | 2 cut(s) | 682, 723 |
| BspTNI | GGTCTC | 1 cut(s) | 1249 |
| BsrDI | GCAATG | 1 cut(s) | 435 |
| BsrFI | RCCGGY | 2 cut(s) | 185, 524 |
| BsrI | ACTGG | 3 cut(s) | 115, 1078, 1261 |
| BssAI | RCCGGY | 2 cut(s) | 185, 524 |
| BssMI | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| BssSI | CACGAG | 1 cut(s) | 144 |
| Bst2BI | CACGAG | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 4 cut(s) | 209, 228, 802, 995 |
| Bst4CI | ACNGT | 2 cut(s) | 714, 991 |
| Bst6I | CTCTTC | 6 cut(s) | 61, 205, 259, 558, 1388, 1416 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 437 |
| BstBAI | YACGTR | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 2 cut(s) | 433, 1428 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 791 |
| BstF5I | GGATG | 1 cut(s) | 1241 |
| BstFNI | CGCG | 2 cut(s) | 546, 1197 |
| BstKTI | GATC | 8 cut(s) | 233, 357, 394, 532, 658, 677, 837, 1225 |
| BstMAI | GTCTC | 3 cut(s) | 161, 449, 1249 |
| BstMBI | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 308, 317, 437, 806, 815, 1211, 1343, 1432 |
| BstNI | CCWGG | 4 cut(s) | 209, 228, 802, 995 |
| BstNSI | RCATGY | 1 cut(s) | 1327 |
| BstSCI | CCNGG | 4 cut(s) | 207, 226, 800, 993 |
| BstSFI | CTRYAG | 3 cut(s) | 162, 342, 813 |
| BstSNI | TACGTA | 1 cut(s) | 629 |
| BstUI | CGCG | 2 cut(s) | 546, 1197 |
| BstV1I | GCAGC | 3 cut(s) | 107, 307, 830 |
| BstV2I | GAAGAC | 1 cut(s) | 1455 |
| BstX2I | RGATCY | 3 cut(s) | 230, 354, 834 |
| BstYI | RGATCY | 3 cut(s) | 230, 354, 834 |
| Bsu15I | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| Bsu36I | CCTNAGG | 1 cut(s) | 267 |
| BsuRI | GGCC | 4 cut(s) | 311, 800, 926, 1190 |
| BsuTUI | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| BtgZI | GCGATG | 1 cut(s) | 1401 |
| BtrI | CACGTC | 1 cut(s) | 13 |
| BtsCI | GGATG | 1 cut(s) | 1241 |
| BveI | ACCTGC | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 2 cut(s) | 433, 1428 |
| Cfr10I | RCCGGY | 2 cut(s) | 185, 524 |
| Cfr13I | GGNCC | 2 cut(s) | 465, 925 |
| ClaI | ATCGAT | 3 cut(s) | 47, 105, 1221 |
| CseI | GACGC | 2 cut(s) | 143, 782 |
| Csp6I | GTAC | 4 cut(s) | 403, 549, 724, 750 |
| CspAI | ACCGGT | 1 cut(s) | 524 |
| CviAII | CATG | 4 cut(s) | 281, 286, 1240, 1324 |
| CviQI | GTAC | 4 cut(s) | 403, 549, 724, 750 |
| DpnI | GATC | 8 cut(s) | 232, 356, 393, 531, 657, 676, 836, 1224 |
| DpnII | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| EaeI | YGGCCR | 2 cut(s) | 309, 798 |
| Eam1104I | CTCTTC | 6 cut(s) | 61, 205, 259, 558, 1388, 1416 |
| EarI | CTCTTC | 6 cut(s) | 61, 205, 259, 558, 1388, 1416 |
| EciI | GGCGGA | 1 cut(s) | 1043 |
| Ecl136II | GAGCTC | 1 cut(s) | 349 |
| Eco105I | TACGTA | 1 cut(s) | 629 |
| Eco24I | GRGCYC | 1 cut(s) | 351 |
| Eco31I | GGTCTC | 1 cut(s) | 1249 |
| Eco47I | GGWCC | 1 cut(s) | 465 |
| Eco53kI | GAGCTC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 3 cut(s) | 411, 776, 814 |
| Eco81I | CCTNAGG | 1 cut(s) | 267 |
| Eco88I | CYCGRG | 2 cut(s) | 350, 737 |
| EcoICRI | GAGCTC | 1 cut(s) | 349 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 791 |
| EcoO109I | RGGNCCY | 1 cut(s) | 925 |
| EcoRII | CCWGG | 4 cut(s) | 207, 226, 800, 993 |
| EcoT22I | ATGCAT | 2 cut(s) | 1241, 1329 |
| EcoT38I | GRGCYC | 1 cut(s) | 351 |
| Esp3I | CGTCTC | 2 cut(s) | 161, 449 |
| FaeI | CATG | 4 cut(s) | 284, 289, 1243, 1327 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 771, 803, 1096, 1128, 1294, 1326, 1410, 1442 |
| FaqI | GGGAC | 2 cut(s) | 983, 1274 |
| FatI | CATG | 4 cut(s) | 280, 285, 1239, 1323 |
| FauNDI | CATATG | 1 cut(s) | 1437 |
| FbaI | TGATCA | 2 cut(s) | 391, 655 |
| FblI | GTMKAC | 1 cut(s) | 868 |
| Fnu4HI | GCNGC | 4 cut(s) | 96, 321, 798, 819 |
| FokI | GGATG | 1 cut(s) | 1248 |
| FriOI | GRGCYC | 1 cut(s) | 351 |
| Fsp4HI | GCNGC | 4 cut(s) | 96, 321, 798, 819 |
| GluI | GCNGC | 4 cut(s) | 96, 321, 798, 819 |
| GsaI | CCCAGC | 2 cut(s) | 599, 878 |
| HaeIII | GGCC | 4 cut(s) | 311, 800, 926, 1190 |
| HapII | CCGG | 2 cut(s) | 186, 525 |
| HgaI | GACGC | 2 cut(s) | 143, 782 |
| Hin1II | CATG | 4 cut(s) | 284, 289, 1243, 1327 |
| HincII | GTYRAC | 1 cut(s) | 457 |
| HindII | GTYRAC | 1 cut(s) | 457 |
| HindIII | AAGCTT | 1 cut(s) | 417 |
| HinfI | GANTC | 5 cut(s) | 4, 489, 745, 1050, 1107 |
| HpaII | CCGG | 2 cut(s) | 186, 525 |
| HphI | GGTGA | 4 cut(s) | 175, 284, 539, 890 |
| Hpy166II | GTNNAC | 2 cut(s) | 457, 869 |
| Hpy188I | TCNGA | 7 cut(s) | 235, 387, 396, 615, 932, 1150, 1343 |
| Hpy8I | GTNNAC | 2 cut(s) | 457, 869 |
| Hpy99I | CGWCG | 3 cut(s) | 138, 1202, 1276 |
| HpyAV | CCTTC | 9 cut(s) | 48, 79, 118, 214, 336, 456, 620, 797, 916 |
| HpyCH4III | ACNGT | 2 cut(s) | 714, 991 |
| HpyCH4IV | ACGT | 3 cut(s) | 12, 453, 628 |
| HpyCH4V | TGCA | 9 cut(s) | 76, 95, 344, 565, 575, 640, 843, 1239, 1327 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 308, 317, 437, 806, 815, 1211, 1343, 1432 |
| HpySE526I | ACGT | 3 cut(s) | 12, 453, 628 |
| Hsp92II | CATG | 4 cut(s) | 284, 289, 1243, 1327 |
| KpnI | GGTACC | 1 cut(s) | 727 |
| Ksp22I | TGATCA | 2 cut(s) | 391, 655 |
| Kzo9I | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| LguI | GCTCTTC | 1 cut(s) | 1416 |
| LmnI | GCTCC | 2 cut(s) | 328, 1202 |
| Lsp1109I | GCAGC | 3 cut(s) | 107, 307, 830 |
| LweI | GCATC | 7 cut(s) | 343, 491, 574, 1156, 1185, 1201, 1226 |
| MaeII | ACGT | 3 cut(s) | 12, 453, 628 |
| MaeIII | GTNAC | 1 cut(s) | 629 |
| MalI | GATC | 8 cut(s) | 232, 356, 393, 531, 657, 676, 836, 1224 |
| MboI | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| MflI | RGATCY | 3 cut(s) | 230, 354, 834 |
| MhlI | GDGCHC | 2 cut(s) | 198, 351 |
| MluCI | AATT | 4 cut(s) | 79, 540, 855, 1305 |
| MlyI | GAGTC | 2 cut(s) | 483, 1044 |
| Mph1103I | ATGCAT | 2 cut(s) | 1241, 1329 |
| MroXI | GAANNNNTTC | 1 cut(s) | 609 |
| MslI | CAYNNNNRTG | 1 cut(s) | 473 |
| MspI | CCGG | 2 cut(s) | 186, 525 |
| MspR9I | CCNGG | 4 cut(s) | 209, 228, 802, 995 |
| MvaI | CCWGG | 4 cut(s) | 209, 228, 802, 995 |
| MvnI | CGCG | 2 cut(s) | 546, 1197 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 308, 317, 437, 806, 815, 1211, 1343, 1432 |
| NdeI | CATATG | 1 cut(s) | 1437 |
| NdeII | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| NlaIII | CATG | 4 cut(s) | 284, 289, 1243, 1327 |
| NlaIV | GGNNCC | 5 cut(s) | 225, 232, 684, 725, 836 |
| NsiI | ATGCAT | 2 cut(s) | 1241, 1329 |
| NspI | RCATGY | 1 cut(s) | 1327 |
| PaeR7I | CTCGAG | 1 cut(s) | 350 |
| PciSI | GCTCTTC | 1 cut(s) | 1416 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 142, 151 |
| PdmI | GAANNNNTTC | 1 cut(s) | 609 |
| PfeI | GAWTC | 2 cut(s) | 745, 1107 |
| PfoI | TCCNGGA | 3 cut(s) | 207, 226, 993 |
| PinAI | ACCGGT | 1 cut(s) | 524 |
| PkrI | GCNGC | 4 cut(s) | 97, 322, 799, 820 |
| PleI | GAGTC | 2 cut(s) | 483, 1044 |
| PpsI | GAGTC | 2 cut(s) | 483, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 629 |
| Psp124BI | GAGCTC | 1 cut(s) | 351 |
| Psp6I | CCWGG | 4 cut(s) | 207, 226, 800, 993 |
| PspFI | CCCAGC | 2 cut(s) | 595, 874 |
| PspGI | CCWGG | 4 cut(s) | 207, 226, 800, 993 |
| PspN4I | GGNNCC | 5 cut(s) | 225, 232, 684, 725, 836 |
| PspPI | GGNCC | 2 cut(s) | 465, 925 |
| PstI | CTGCAG | 1 cut(s) | 346 |
| PsuI | RGATCY | 3 cut(s) | 230, 354, 834 |
| RsaI | GTAC | 4 cut(s) | 404, 550, 725, 751 |
| RsaNI | GTAC | 4 cut(s) | 403, 549, 724, 750 |
| RseI | CAYNNNNRTG | 1 cut(s) | 473 |
| SacI | GAGCTC | 1 cut(s) | 351 |
| SapI | GCTCTTC | 1 cut(s) | 1416 |
| SatI | GCNGC | 4 cut(s) | 96, 321, 798, 819 |
| Sau3AI | GATC | 8 cut(s) | 230, 354, 391, 529, 655, 674, 834, 1222 |
| Sau96I | GGNCC | 2 cut(s) | 465, 925 |
| SchI | GAGTC | 2 cut(s) | 483, 1044 |
| ScrFI | CCNGG | 4 cut(s) | 209, 228, 802, 995 |
| SduI | GDGCHC | 2 cut(s) | 198, 351 |
| SfaNI | GCATC | 7 cut(s) | 343, 491, 574, 1156, 1185, 1201, 1226 |
| SfcI | CTRYAG | 3 cut(s) | 162, 342, 813 |
| Sfr274I | CTCGAG | 1 cut(s) | 350 |
| SinI | GGWCC | 1 cut(s) | 465 |
| SlaI | CTCGAG | 1 cut(s) | 350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 473 |
| SmlI | CTYRAG | 5 cut(s) | 350, 446, 1020, 1102, 1300 |
| SmoI | CTYRAG | 5 cut(s) | 350, 446, 1020, 1102, 1300 |
| SnaBI | TACGTA | 1 cut(s) | 629 |
| Sse9I | AATT | 4 cut(s) | 79, 540, 855, 1305 |
| SsiI | CCGC | 6 cut(s) | 546, 797, 956, 1054, 1081, 1169 |
| SstI | GAGCTC | 1 cut(s) | 351 |
| StyD4I | CCNGG | 4 cut(s) | 207, 226, 800, 993 |
| TaaI | ACNGT | 2 cut(s) | 714, 991 |
| TaiI | ACGT | 3 cut(s) | 15, 456, 631 |
| TaqI | TCGA | 7 cut(s) | 47, 105, 351, 762, 942, 1221, 1271 |
| TasI | AATT | 4 cut(s) | 79, 540, 855, 1305 |
| TatI | WGTACW | 1 cut(s) | 402 |
| TauI | GCSGC | 1 cut(s) | 800 |
| TfiI | GAWTC | 2 cut(s) | 745, 1107 |
| TseI | GCWGC | 3 cut(s) | 95, 320, 818 |
| TspDTI | ATGAA | 3 cut(s) | 35, 291, 358 |
| TspGWI | ACGGA | 3 cut(s) | 785, 1215, 1248 |
| VpaK11BI | GGWCC | 1 cut(s) | 465 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 791 |
| XapI | RAATTY | 2 cut(s) | 79, 540 |
| XceI | RCATGY | 1 cut(s) | 1327 |
| XhoI | CTCGAG | 1 cut(s) | 350 |
| XmiI | GTMKAC | 1 cut(s) | 868 |
| XmnI | GAANNNNTTC | 1 cut(s) | 609 |
| Zsp2I | ATGCAT | 2 cut(s) | 1241, 1329 |