AT1G20200

26S proteasome non-ATPase regulatory subunit 3 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
7001087 .. 7004432
3346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20200.1

Sequence Viewer

Length: 1467 bp
ATGACTCAGGACGTGGAGATGAAAGATAACAACACCCCTTCTCAATCGATTATCTCTTCTTCTACCTCTACTATGCAGAATTTGAAGGAGATTGCAGCACTCATCGATACTGGGTCTTACACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTGCGTCTCACTATAGGGCTTAGGCAGAAACTCACCGGCTCTGTGCTCTCTTCCTTCCTGGATTTTGCTTTGGTTCCAGGATCCGAAGCTCACTCTCGCCTCTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATGGAAGTTGATACTGCCTCATCGGCCACACAAGCTGCTCCTTCTAAGCATCTACCTGCAGAGCTCGAGATCTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAGAAGTACAACGAGGCTAAAGCTTGTTCTTCAGCAAGCATTGCTCGTCTCAAGAACGTCAACCGAAGGACCATTGATGTGATAGCATCAAGACTCTACTTTTACTATTCTTTGAGTTATGAGCAAACCGGTGATCTTGCTGAAATTCGCGGTACTCTTCTTGCGTTGCATCATTCTGCAACGCTAAGACACGATGAGCTGGGTCAGGAAACCCTTCTGAACCTGTTGCTACGTAACTATTTGCATTACAACCTCTATGATCAGGCAGAGAAGCTAAGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAACCAACAGTTTTGTAGGTACCTTTTCTATCTCGGGAAGATTCGTACTATTCAGCTCGAATATACGGACGCAAAAGAGAGCCTTCTTCAGGCGGCCAGGAAAGCCCCTATAGCAGCTTTGGGCTTCAGGATCCAATGCAATAAATGGGCAATTCTGGTTCGTCTACTGCTGGGTGAGATACCAGAGCGTTCTATCTTCACTCAAAAGGGTATGGAGAAGGCCCTCAGACCCTACTTCGAGCTAACAAATGCGGTTAGGATTGGGGACTTGGAGTTGTTTAGGACAGTCCAGGAGAAGTTCTTGGACACATTTGCTCAAGACAGAACGCACAATCTCATCGTGCGACTCCGCCACAATGTCATCAGGACTGGACTGCGGAACATAAGTATCTCCTACTCAAGAATCTCTTTACCCGATGTTGCCAAAAAGCTGAGGCTCAACTCTGAAAACCCTGTGGCTGATGCGGAAAGCATCGTGGCAAAGGCCATACGCGACGGAGCTATTGATGCTACAATCGATCACAAAAACGGATGCATGGTCTCCAAAGAAACTGGGGACATCTACTCGACGAATGAGCCACAAACTGCGTTCAACTCAAGAATTGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTCCTAACACTCACAAGGAGAAAGAAAGCGATGAGAAGAGGAGAGAGAGGAAGCAACAGGAAGAAGAGCTTGCTAAGCATATGGCTGAGGAAGACGATGATGATTTTTAG

Protein Analysis

488

Amino Acids

55.58

Weight (kDa)

8.35

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PSMD3_N PF25573 22 - 317 3e-105 PSMD3-like, N-terminal TPR repeats
PCI PF01399 337 - 417 1.9e-20 PCI domain
Rpn3_C PF08375 421 - 487 1.2e-26 Proteasome regulatory subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 723
AccB1I GGYRCC 2 cut(s) 682, 723
AccI GTMKAC 1 cut(s) 868
AccII CGCG 2 cut(s) 546, 1197
AciI CCGC 6 cut(s) 546, 797, 956, 1054, 1081, 1169
AclWI GGATC 4 cut(s) 225, 238, 829, 842
AcoI YGGCCR 2 cut(s) 309, 798
AcsI RAATTY 2 cut(s) 79, 540
AcuI CTGAAG 3 cut(s) 411, 776, 814
AfaI GTAC 4 cut(s) 404, 550, 725, 751
AfiI CCNNNNNNNGG 1 cut(s) 793
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 3 cut(s) 85, 705, 1297
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 4 cut(s) 207, 226, 800, 993
Alw21I GWGCWC 2 cut(s) 198, 351
Alw26I GTCTC 3 cut(s) 161, 449, 1249
AlwI GGATC 4 cut(s) 225, 238, 829, 842
Ama87I CYCGRG 2 cut(s) 350, 737
AoxI GGCC 4 cut(s) 309, 798, 924, 1188
ApeKI GCWGC 3 cut(s) 95, 320, 818
ApoI RAATTY 2 cut(s) 79, 540
AsiGI ACCGGT 1 cut(s) 524
Asp700I GAANNNNTTC 1 cut(s) 609
Asp718I GGTACC 1 cut(s) 723
AspS9I GGNCC 2 cut(s) 465, 925
AsuHPI GGTGA 4 cut(s) 175, 284, 539, 890
AvaI CYCGRG 2 cut(s) 350, 737
AvaII GGWCC 1 cut(s) 465
AxyI CCTNAGG 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 1075, 1108
BamHI GGATCC 2 cut(s) 230, 834
BanI GGYRCC 2 cut(s) 682, 723
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 1455
Bbv12I GWGCWC 2 cut(s) 198, 351
BbvCI CCTCAGC 2 cut(s) 1136, 1443
BbvI GCAGC 3 cut(s) 107, 307, 830
BciT130I CCWGG 4 cut(s) 209, 228, 802, 995
BclI TGATCA 2 cut(s) 391, 655
BcoDI GTCTC 3 cut(s) 161, 449, 1249
BfmI CTRYAG 3 cut(s) 162, 342, 813
BfuAI ACCTGC 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 308
BglII AGATCT 1 cut(s) 354
BisI GCNGC 4 cut(s) 96, 321, 798, 819
BlpI GCTNAGC 1 cut(s) 1431
BlsI GCNGC 4 cut(s) 97, 322, 799, 820
Bme1390I CCNGG 4 cut(s) 209, 228, 802, 995
Bme18I GGWCC 1 cut(s) 465
BmeT110I CYCGRG 2 cut(s) 350, 737
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 465, 925
BmiI GGNNCC 5 cut(s) 225, 232, 684, 725, 836
BmrFI CCNGG 4 cut(s) 209, 228, 802, 995
BmrI ACTGGG 2 cut(s) 120, 1266
BmsI GCATC 7 cut(s) 343, 491, 574, 1156, 1185, 1201, 1226
BmuI ACTGGG 2 cut(s) 120, 1266
BpiI GAAGAC 1 cut(s) 1455
BplI GAGNNNNNCTC 2 cut(s) 1342, 1374
Bpu10I CCTNAGC 3 cut(s) 170, 1136, 1443
Bpu1102I GCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 4 cut(s) 431, 1005, 1087, 1285
Bsa29I ATCGAT 3 cut(s) 47, 105, 1221
BsaAI YACGTR 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 1249
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse118I RCCGGY 2 cut(s) 185, 524
Bse1I ACTGG 3 cut(s) 115, 1078, 1261
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 4 cut(s) 209, 228, 802, 995
BseCI ATCGAT 3 cut(s) 47, 105, 1221
BseGI GGATG 1 cut(s) 1241
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 4 cut(s) 20, 943, 1127, 1434
BseNI ACTGG 3 cut(s) 115, 1078, 1261
BseRI GAGGAG 1 cut(s) 1411
BseXI GCAGC 3 cut(s) 107, 307, 830
BseYI CCCAGC 2 cut(s) 595, 874
Bsh1236I CGCG 2 cut(s) 546, 1197
BshFI GGCC 4 cut(s) 311, 800, 926, 1190
BshNI GGYRCC 2 cut(s) 682, 723
BshTI ACCGGT 1 cut(s) 524
BshVI ATCGAT 3 cut(s) 47, 105, 1221
BsiHKAI GWGCWC 2 cut(s) 198, 351
BsiHKCI CYCGRG 2 cut(s) 350, 737
BsiSI CCGG 2 cut(s) 186, 525
BslFI GGGAC 2 cut(s) 983, 1274
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 3 cut(s) 161, 449, 1249
BsmBI CGTCTC 2 cut(s) 161, 449
BsmFI GGGAC 2 cut(s) 983, 1274
BsnI GGCC 4 cut(s) 311, 800, 926, 1190
Bso31I GGTCTC 1 cut(s) 1249
BsoBI CYCGRG 2 cut(s) 350, 737
Bsp1286I GDGCHC 2 cut(s) 198, 351
Bsp143I GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
Bsp1720I GCTNAGC 1 cut(s) 1431
BspACI CCGC 6 cut(s) 546, 797, 956, 1054, 1081, 1169
BspANI GGCC 4 cut(s) 311, 800, 926, 1190
BspCNI CTCAG 4 cut(s) 19, 942, 1128, 1435
BspDI ATCGAT 3 cut(s) 47, 105, 1221
BspFNI CGCG 2 cut(s) 546, 1197
BspLI GGNNCC 5 cut(s) 225, 232, 684, 725, 836
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 4 cut(s) 225, 238, 829, 842
BspQI GCTCTTC 1 cut(s) 1416
BspT107I GGYRCC 2 cut(s) 682, 723
BspTNI GGTCTC 1 cut(s) 1249
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 2 cut(s) 185, 524
BsrI ACTGG 3 cut(s) 115, 1078, 1261
BssAI RCCGGY 2 cut(s) 185, 524
BssMI GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
BssSI CACGAG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 4 cut(s) 209, 228, 802, 995
Bst4CI ACNGT 2 cut(s) 714, 991
Bst6I CTCTTC 6 cut(s) 61, 205, 259, 558, 1388, 1416
BstAPI GCANNNNNTGC 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 433, 1428
BstENI CCTNNNNNAGG 1 cut(s) 791
BstF5I GGATG 1 cut(s) 1241
BstFNI CGCG 2 cut(s) 546, 1197
BstKTI GATC 8 cut(s) 233, 357, 394, 532, 658, 677, 837, 1225
BstMAI GTCTC 3 cut(s) 161, 449, 1249
BstMBI GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
BstMWI GCNNNNNNNGC 8 cut(s) 308, 317, 437, 806, 815, 1211, 1343, 1432
BstNI CCWGG 4 cut(s) 209, 228, 802, 995
BstNSI RCATGY 1 cut(s) 1327
BstSCI CCNGG 4 cut(s) 207, 226, 800, 993
BstSFI CTRYAG 3 cut(s) 162, 342, 813
BstSNI TACGTA 1 cut(s) 629
BstUI CGCG 2 cut(s) 546, 1197
BstV1I GCAGC 3 cut(s) 107, 307, 830
BstV2I GAAGAC 1 cut(s) 1455
BstX2I RGATCY 3 cut(s) 230, 354, 834
BstYI RGATCY 3 cut(s) 230, 354, 834
Bsu15I ATCGAT 3 cut(s) 47, 105, 1221
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 4 cut(s) 311, 800, 926, 1190
BsuTUI ATCGAT 3 cut(s) 47, 105, 1221
BtgZI GCGATG 1 cut(s) 1401
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 1241
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 433, 1428
Cfr10I RCCGGY 2 cut(s) 185, 524
Cfr13I GGNCC 2 cut(s) 465, 925
ClaI ATCGAT 3 cut(s) 47, 105, 1221
CseI GACGC 2 cut(s) 143, 782
Csp6I GTAC 4 cut(s) 403, 549, 724, 750
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 4 cut(s) 281, 286, 1240, 1324
CviQI GTAC 4 cut(s) 403, 549, 724, 750
DpnI GATC 8 cut(s) 232, 356, 393, 531, 657, 676, 836, 1224
DpnII GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
EaeI YGGCCR 2 cut(s) 309, 798
Eam1104I CTCTTC 6 cut(s) 61, 205, 259, 558, 1388, 1416
EarI CTCTTC 6 cut(s) 61, 205, 259, 558, 1388, 1416
EciI GGCGGA 1 cut(s) 1043
Ecl136II GAGCTC 1 cut(s) 349
Eco105I TACGTA 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 1249
Eco47I GGWCC 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 3 cut(s) 411, 776, 814
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 2 cut(s) 350, 737
EcoICRI GAGCTC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 4 cut(s) 207, 226, 800, 993
EcoT22I ATGCAT 2 cut(s) 1241, 1329
EcoT38I GRGCYC 1 cut(s) 351
Esp3I CGTCTC 2 cut(s) 161, 449
FaeI CATG 4 cut(s) 284, 289, 1243, 1327
FalI AAGNNNNNCTT 8 cut(s) 771, 803, 1096, 1128, 1294, 1326, 1410, 1442
FaqI GGGAC 2 cut(s) 983, 1274
FatI CATG 4 cut(s) 280, 285, 1239, 1323
FauNDI CATATG 1 cut(s) 1437
FbaI TGATCA 2 cut(s) 391, 655
FblI GTMKAC 1 cut(s) 868
Fnu4HI GCNGC 4 cut(s) 96, 321, 798, 819
FokI GGATG 1 cut(s) 1248
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 4 cut(s) 96, 321, 798, 819
GluI GCNGC 4 cut(s) 96, 321, 798, 819
GsaI CCCAGC 2 cut(s) 599, 878
HaeIII GGCC 4 cut(s) 311, 800, 926, 1190
HapII CCGG 2 cut(s) 186, 525
HgaI GACGC 2 cut(s) 143, 782
Hin1II CATG 4 cut(s) 284, 289, 1243, 1327
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 5 cut(s) 4, 489, 745, 1050, 1107
HpaII CCGG 2 cut(s) 186, 525
HphI GGTGA 4 cut(s) 175, 284, 539, 890
Hpy166II GTNNAC 2 cut(s) 457, 869
Hpy188I TCNGA 7 cut(s) 235, 387, 396, 615, 932, 1150, 1343
Hpy8I GTNNAC 2 cut(s) 457, 869
Hpy99I CGWCG 3 cut(s) 138, 1202, 1276
HpyAV CCTTC 9 cut(s) 48, 79, 118, 214, 336, 456, 620, 797, 916
HpyCH4III ACNGT 2 cut(s) 714, 991
HpyCH4IV ACGT 3 cut(s) 12, 453, 628
HpyCH4V TGCA 9 cut(s) 76, 95, 344, 565, 575, 640, 843, 1239, 1327
HpyF10VI GCNNNNNNNGC 8 cut(s) 308, 317, 437, 806, 815, 1211, 1343, 1432
HpySE526I ACGT 3 cut(s) 12, 453, 628
Hsp92II CATG 4 cut(s) 284, 289, 1243, 1327
KpnI GGTACC 1 cut(s) 727
Ksp22I TGATCA 2 cut(s) 391, 655
Kzo9I GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
LguI GCTCTTC 1 cut(s) 1416
LmnI GCTCC 2 cut(s) 328, 1202
Lsp1109I GCAGC 3 cut(s) 107, 307, 830
LweI GCATC 7 cut(s) 343, 491, 574, 1156, 1185, 1201, 1226
MaeII ACGT 3 cut(s) 12, 453, 628
MaeIII GTNAC 1 cut(s) 629
MalI GATC 8 cut(s) 232, 356, 393, 531, 657, 676, 836, 1224
MboI GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
MflI RGATCY 3 cut(s) 230, 354, 834
MhlI GDGCHC 2 cut(s) 198, 351
MluCI AATT 4 cut(s) 79, 540, 855, 1305
MlyI GAGTC 2 cut(s) 483, 1044
Mph1103I ATGCAT 2 cut(s) 1241, 1329
MroXI GAANNNNTTC 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 473
MspI CCGG 2 cut(s) 186, 525
MspR9I CCNGG 4 cut(s) 209, 228, 802, 995
MvaI CCWGG 4 cut(s) 209, 228, 802, 995
MvnI CGCG 2 cut(s) 546, 1197
MwoI GCNNNNNNNGC 8 cut(s) 308, 317, 437, 806, 815, 1211, 1343, 1432
NdeI CATATG 1 cut(s) 1437
NdeII GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
NlaIII CATG 4 cut(s) 284, 289, 1243, 1327
NlaIV GGNNCC 5 cut(s) 225, 232, 684, 725, 836
NsiI ATGCAT 2 cut(s) 1241, 1329
NspI RCATGY 1 cut(s) 1327
PaeR7I CTCGAG 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 1416
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 151
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 745, 1107
PfoI TCCNGGA 3 cut(s) 207, 226, 993
PinAI ACCGGT 1 cut(s) 524
PkrI GCNGC 4 cut(s) 97, 322, 799, 820
PleI GAGTC 2 cut(s) 483, 1044
PpsI GAGTC 2 cut(s) 483, 1044
Ppu21I YACGTR 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 4 cut(s) 207, 226, 800, 993
PspFI CCCAGC 2 cut(s) 595, 874
PspGI CCWGG 4 cut(s) 207, 226, 800, 993
PspN4I GGNNCC 5 cut(s) 225, 232, 684, 725, 836
PspPI GGNCC 2 cut(s) 465, 925
PstI CTGCAG 1 cut(s) 346
PsuI RGATCY 3 cut(s) 230, 354, 834
RsaI GTAC 4 cut(s) 404, 550, 725, 751
RsaNI GTAC 4 cut(s) 403, 549, 724, 750
RseI CAYNNNNRTG 1 cut(s) 473
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 1416
SatI GCNGC 4 cut(s) 96, 321, 798, 819
Sau3AI GATC 8 cut(s) 230, 354, 391, 529, 655, 674, 834, 1222
Sau96I GGNCC 2 cut(s) 465, 925
SchI GAGTC 2 cut(s) 483, 1044
ScrFI CCNGG 4 cut(s) 209, 228, 802, 995
SduI GDGCHC 2 cut(s) 198, 351
SfaNI GCATC 7 cut(s) 343, 491, 574, 1156, 1185, 1201, 1226
SfcI CTRYAG 3 cut(s) 162, 342, 813
Sfr274I CTCGAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 5 cut(s) 350, 446, 1020, 1102, 1300
SmoI CTYRAG 5 cut(s) 350, 446, 1020, 1102, 1300
SnaBI TACGTA 1 cut(s) 629
Sse9I AATT 4 cut(s) 79, 540, 855, 1305
SsiI CCGC 6 cut(s) 546, 797, 956, 1054, 1081, 1169
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 4 cut(s) 207, 226, 800, 993
TaaI ACNGT 2 cut(s) 714, 991
TaiI ACGT 3 cut(s) 15, 456, 631
TaqI TCGA 7 cut(s) 47, 105, 351, 762, 942, 1221, 1271
TasI AATT 4 cut(s) 79, 540, 855, 1305
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 800
TfiI GAWTC 2 cut(s) 745, 1107
TseI GCWGC 3 cut(s) 95, 320, 818
TspDTI ATGAA 3 cut(s) 35, 291, 358
TspGWI ACGGA 3 cut(s) 785, 1215, 1248
VpaK11BI GGWCC 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 791
XapI RAATTY 2 cut(s) 79, 540
XceI RCATGY 1 cut(s) 1327
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 868
XmnI GAANNNNTTC 1 cut(s) 609
Zsp2I ATGCAT 2 cut(s) 1241, 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.