Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Reverse (-)

16066649 .. 16067237

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0117600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCGAATTACAATAACATCAAAAGCAAAGCATTCACCAAAAGAGAGGAGTCACTTTCACCTAAACTCACATATTTGTCACTTTCAGAGAATAACATTAGTGGCACTATCCCAGGTTCTTTTGGAAATCTTAGCCAGCTCACAACACTTCATCTTCGTTCAAATCAATTATCTGGTCCAATCCCATCTTGTCTGGGTAATCTTGGCAAACTTACTAATCTTGATCTTAGTTTCAATAAATTTCAGAGAGAAATTCCCCAGTCATTATCCAATGTAGCAAGTCTCAAGAGACTTGCTCTAGCTGGTAATAATCTGAGCGGTACAGTGGAGTTCCTCAAATTTCTTAAACTACCAAATCTAAAATTGGTAGCAATAGCTGTTGTCATATATCTTGGCAGCAATAGCTCTTCTCCTCCATTCCCTCCTCGATCTTGTTCGATGACCACCGTGGTCGTTCCCGAGCACCCACCTCCAACCTCCTGTGAGCTTTCACTCTCTCGAGTCGGTATGATGGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI Rpn3_C

Protein Analysis

173

Amino Acids

18.65

Weight (kDa)

9.72

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	21 - 57	4.5e-08	Leucine rich repeat
LRR_4	PF12799	21 - 57	1.5e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	22 - 125	7.4e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	1 cut(s)	318
AcsI	RAATTY	3 cut(s)	239, 252, 338
AfaI	GTAC	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	162, 235
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	5 cut(s)	139, 302, 377, 405, 487
AluI	AGCT	5 cut(s)	139, 302, 377, 405, 487
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	283, 287
Ama87I	CYCGRG	2 cut(s)	458, 498
ApeKI	GCWGC	1 cut(s)	396
ApoI	RAATTY	3 cut(s)	239, 252, 338
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	28, 51
AvaI	CYCGRG	2 cut(s)	458, 498
AvaII	GGWCC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	2 cut(s)	193, 505
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	283, 287
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	2 cut(s)	458, 498
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	112, 447
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	112, 447
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	3 cut(s)	62, 402, 414
BseXI	GCAGC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	465
BsiHKCI	CYCGRG	2 cut(s)	458, 498
BsmAI	GTCTC	2 cut(s)	283, 287
BsmI	GAATGC	1 cut(s)	32
BsoBI	CYCGRG	2 cut(s)	458, 498
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	223, 428
BspACI	CCGC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	412
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	112, 447
BssMI	GATC	2 cut(s)	223, 428
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	325, 448
Bst6I	CTCTTC	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	131, 227, 314
BstDSI	CCRYGG	1 cut(s)	447
BstKTI	GATC	2 cut(s)	226, 431
BstMAI	GTCTC	2 cut(s)	283, 287
BstMBI	GATC	2 cut(s)	223, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	321
CviJI	RGCY	6 cut(s)	135, 139, 302, 377, 405, 487
CviKI_1	RGCY	6 cut(s)	135, 139, 302, 377, 405, 487
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	3 cut(s)	131, 227, 314
DpnI	GATC	2 cut(s)	225, 430
DpnII	GATC	2 cut(s)	223, 428
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	176
Eco88I	CYCGRG	2 cut(s)	458, 498
EcoRII	CCWGG	1 cut(s)	112
FaiI	YATR	4 cut(s)	73, 386, 388, 509
Fnu4HI	GCNGC	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	50, 501
HphI	GGTGA	2 cut(s)	28, 51
Hpy188I	TCNGA	3 cut(s)	88, 246, 315
Hpy188III	TCNNGA	4 cut(s)	221, 286, 458, 498
HpyCH4III	ACNGT	2 cut(s)	325, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	3 cut(s)	131, 227, 314
Kzo9I	GATC	2 cut(s)	223, 428
LguI	GCTCTTC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	99, 126, 149, 159, 179, 272, 288, 493
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	51, 78
MalI	GATC	2 cut(s)	225, 430
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	2 cut(s)	223, 428
MboII	GAAGA	2 cut(s)	146, 399
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	7 cut(s)	7, 167, 239, 252, 338, 362, 517
MlyI	GAGTC	2 cut(s)	59, 510
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	7 cut(s)	40, 344, 423, 432, 435, 480, 487
MseI	TTAA	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	402
NdeII	GATC	2 cut(s)	223, 428
NmuCI	GTSAC	2 cut(s)	51, 78
PaeR7I	CTCGAG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	412
PctI	GAATGC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	2 cut(s)	58, 509
PpsI	GAGTC	2 cut(s)	58, 509
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	2 cut(s)	223, 428
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	59, 510
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	9 cut(s)	64, 118, 141, 304, 379, 407, 472, 479, 489
Sfr274I	CTCGAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	284, 498
SmoI	CTYRAG	2 cut(s)	284, 498
Sse9I	AATT	7 cut(s)	7, 167, 239, 252, 338, 362, 517
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	325, 448
TaqI	TCGA	4 cut(s)	5, 427, 437, 499
TasI	AATT	7 cut(s)	7, 167, 239, 252, 338, 362, 517
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	51, 78
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	2 cut(s)	51, 78
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	3 cut(s)	239, 252, 338
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.