Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Reverse (-)

54449987 .. 54450500

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGAAGAGGCGGAAGCTGAGTGTTTCTGTGCTCTCGGCGTTTCTCAGTTTCGCCTTTTCGCTGGGATCTAAGGCTTACACCAAGCTACACAATTATATTGCAAAGAAGATACACCAAGCTACACAATTATATTGCAAAGAAGATAGGTTGTCCTATCTTCCGAAGGATGTTGACACTGCAACTTCTGCCACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAGAATACAGTGAGGCTAAAGCTTGTGCCACAGCTGGCATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI Rpn3_C

Protein Analysis

106

Amino Acids

11.86

Weight (kDa)

9.28

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_PSMD3_N	PF25573	3 - 103	9e-13	PSMD3-like, N-terminal TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	76
AluBI	AGCT	6 cut(s)	19, 88, 122, 226, 296, 308
AluI	AGCT	6 cut(s)	19, 88, 122, 226, 296, 308
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	11, 61, 213
BseYI	CCCAGC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	68, 268
BspACI	CCGC	1 cut(s)	13
BspCNI	CTCAG	3 cut(s)	12, 60, 214
BspPI	GGATC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	312
BssMI	GATC	2 cut(s)	68, 268
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	2
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	4 cut(s)	20, 47, 72, 222
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	71, 271
BstMBI	GATC	2 cut(s)	68, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 314
BstNSI	RCATGY	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 289
Cac8I	GCNNGC	1 cut(s)	310
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	8 cut(s)	19, 77, 88, 122, 226, 290, 296, 308
CviKI_1	RGCY	8 cut(s)	19, 77, 88, 122, 226, 290, 296, 308
DdeI	CTNAG	4 cut(s)	20, 47, 72, 222
DpnI	GATC	2 cut(s)	70, 270
DpnII	GATC	2 cut(s)	68, 268
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EciI	GGCGGA	1 cut(s)	28
FaeI	CATG	1 cut(s)	215
FaiI	YATR	3 cut(s)	99, 133, 213
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	268
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	165, 264, 273
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	104, 138, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 314
HpyF3I	CTNAG	4 cut(s)	20, 47, 72, 222
Hsp92II	CATG	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	68, 268
LpnPI	CCDG	4 cut(s)	50, 233, 234, 294
MaeI	CTAG	1 cut(s)	227
MalI	GATC	2 cut(s)	70, 270
MboI	GATC	2 cut(s)	68, 268
MboII	GAAGA	4 cut(s)	19, 121, 152, 155
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	94, 128
MnlI	CCTC	3 cut(s)	3, 226, 280
MspA1I	CMGCKG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	188, 314
NdeII	GATC	2 cut(s)	68, 268
NlaIII	CATG	1 cut(s)	215
NmeAIII	GCCGAG	1 cut(s)	17
NspI	RCATGY	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	68, 268
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	7 cut(s)	21, 90, 124, 152, 228, 298, 310
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	94, 128
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	2 cut(s)	94, 128
TscAI	CASTG	2 cut(s)	184, 289
TspRI	CASTG	2 cut(s)	184, 289
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.