Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Forward (+)

37600121 .. 37609957

Gene Structure 9837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTTTGTTAGAGATGCTAAGGCTCTTTGTCCACACCTTGTCATTCTTCCTTATGATTTTGAAGCATATGAGGAGGCAGTAAGCTATGACGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATATGGATATGTTAGCCTCAATTATAATACAAGAGATCTTTGAGACTACTGGATGCATTGCAAGTGCTGGCATAGCTAGAAATATGCTCATGGCTCGCCTTACAACAAGAACTGCTAAACCAGACGTGAGGTATTACTTTATGGCACAAGAAGCTTATAGCAGAAAGAGCATATTCAGGCATTCTGAGTCACCAAGTGTGTATATTAGCAATATGTACAACTTCATGAGAGTCCCTTCTACTACTCCCACAACCCTCCACCATTTAAAGGAGATTGCTTCGCTCCTTGAGACCGCTGCGTATACCAAGGAGGTCCGGCGAGTTGTCCGCGCCGTTAGGCTAACGATGGCGAAGAGGCGGAAGCTGAGTGTTTCTGTGCTCTCGGCGTTTCTCAGTTTCGCCTTTTCGCCAGGATCTAAGGCTCACACCAAGCTACACAATTATATTGCAAAGAAGGACGATGAGCATGACATGGATGTTGACACTGAAACTTTTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGAATTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAGAATACAGTGAGAACATGAATAGGAGAACTGTTGATGTCCTGGCATCAAGGCTTTACTTCTATCACTCTATTAGCTATGAATATACCGGTGATCTCGCAGAAATTAGAGGGACCTCATATCAAGCAACTAGAATTAGACAGTACTTTCCATATTGGAAAGCAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI Rpn3_C

Protein Analysis

292

Amino Acids

33.8

Weight (kDa)

7.72

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	25 - 78	1.2e-07	impB/mucB/samB family
TPR_PSMD3_N	PF25573	126 - 278	1.2e-25	PSMD3-like, N-terminal TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	1 cut(s)	456
AciI	CCGC	3 cut(s)	420, 454, 484
AclWI	GGATC	1 cut(s)	547
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	344, 851
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgeI	ACCGGT	1 cut(s)	794
AgsI	TTSAA	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	535, 747
AluBI	AGCT	8 cut(s)	84, 203, 281, 490, 559, 658, 783, 876
AluI	AGCT	8 cut(s)	84, 203, 281, 490, 559, 658, 783, 876
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	2 cut(s)	164, 410
AlwI	GGATC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	439, 819
AsuHPI	GGTGA	2 cut(s)	309, 809
AvaII	GGWCC	2 cut(s)	439, 819
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	443
BciT130I	CCWGG	2 cut(s)	537, 749
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	164, 410
BfaI	CTAG	3 cut(s)	204, 659, 837
BglII	AGATCT	1 cut(s)	162
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	2 cut(s)	537, 749
Bme18I	GGWCC	2 cut(s)	439, 819
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	439, 819
BmiI	GGNNCC	1 cut(s)	820
BmrFI	CCNGG	2 cut(s)	537, 749
BmsI	GCATC	3 cut(s)	4, 170, 761
Bpu10I	CCTNAGC	2 cut(s)	18, 654
BpuEI	CTTGAG	2 cut(s)	434, 612
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	794
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	537, 749
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	185, 607
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	4 cut(s)	303, 482, 532, 645
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	1 cut(s)	456
BshTI	ACCGGT	1 cut(s)	794
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	442, 795
BslFI	GGGAC	2 cut(s)	344, 832
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	164, 410
BsmFI	GGGAC	2 cut(s)	344, 832
BsmI	GAATGC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	162, 539, 700, 799
BspACI	CCGC	3 cut(s)	420, 454, 484
BspCNI	CTCAG	4 cut(s)	304, 483, 531, 646
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	820
BspPI	GGATC	1 cut(s)	547
BspTNI	GGTCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	794
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	4 cut(s)	162, 539, 700, 799
BssNAI	GTATAC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	537, 749
Bst4CI	ACNGT	3 cut(s)	716, 739, 849
Bst6I	CTCTTC	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	196, 223
BstDEI	CTNAG	6 cut(s)	18, 312, 491, 518, 543, 654
BstF5I	GGATG	2 cut(s)	185, 607
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	165, 542, 703, 802
BstMAI	GTCTC	2 cut(s)	164, 410
BstMBI	GATC	4 cut(s)	162, 539, 700, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 278, 294
BstNI	CCWGG	2 cut(s)	537, 749
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	535, 747
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	162, 539
BstYI	RGATCY	2 cut(s)	162, 539
BstZ17I	GTATAC	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	185, 607
BtsIMutI	CAGTG	2 cut(s)	609, 721
Cac8I	GCNNGC	2 cut(s)	196, 223
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	439, 819
Csp6I	GTAC	2 cut(s)	343, 850
CspAI	ACCGGT	1 cut(s)	794
CviAII	CATG	6 cut(s)	217, 352, 593, 598, 644, 724
CviQI	GTAC	2 cut(s)	343, 850
DdeI	CTNAG	6 cut(s)	18, 312, 491, 518, 543, 654
DpnI	GATC	4 cut(s)	164, 541, 702, 801
DpnII	GATC	4 cut(s)	162, 539, 700, 799
DraI	TTTAAA	1 cut(s)	393
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EciI	GGCGGA	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	439, 819
EcoO109I	RGGNCCY	1 cut(s)	819
EcoRII	CCWGG	2 cut(s)	535, 747
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	6 cut(s)	220, 355, 596, 601, 647, 727
FaqI	GGGAC	2 cut(s)	344, 832
FatI	CATG	6 cut(s)	216, 351, 592, 597, 643, 723
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	192, 614
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	3 cut(s)	204, 659, 837
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	1 cut(s)	423
HapII	CCGG	2 cut(s)	442, 795
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	6 cut(s)	220, 355, 596, 601, 647, 727
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	2 cut(s)	314, 357
HpaII	CCGG	2 cut(s)	442, 795
HphI	GGTGA	2 cut(s)	309, 809
Hpy166II	GTNNAC	3 cut(s)	32, 429, 607
Hpy188I	TCNGA	3 cut(s)	313, 696, 705
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	32, 429, 607
HpyAV	CCTTC	3 cut(s)	113, 372, 574
HpyCH4III	ACNGT	3 cut(s)	716, 739, 849
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	183, 188, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 278, 294
HpyF3I	CTNAG	6 cut(s)	18, 312, 491, 518, 543, 654
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	6 cut(s)	220, 355, 596, 601, 647, 727
HspAI	GCGC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	162, 539, 700, 799
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	3 cut(s)	4, 170, 761
MaeI	CTAG	3 cut(s)	204, 659, 837
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	106, 315
MalI	GATC	4 cut(s)	164, 541, 702, 801
MboI	GATC	4 cut(s)	162, 539, 700, 799
MboII	GAAGA	2 cut(s)	38, 490
MflI	RGATCY	2 cut(s)	162, 539
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	5 cut(s)	147, 565, 664, 810, 840
MlyI	GAGTC	2 cut(s)	323, 366
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	442, 795
MspR9I	CCNGG	2 cut(s)	537, 749
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	537, 749
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	200, 278, 294
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	162, 539, 700, 799
NlaIII	CATG	6 cut(s)	220, 355, 596, 601, 647, 727
NlaIV	GGNNCC	1 cut(s)	820
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	106, 315
NsiI	ATGCAT	1 cut(s)	185
NspI	RCATGY	1 cut(s)	647
PagI	TCATGA	1 cut(s)	351
PctI	GAATGC	1 cut(s)	307
PinAI	ACCGGT	1 cut(s)	794
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	322, 365
PpsI	GAGTC	2 cut(s)	322, 365
PpuMI	RGGWCCY	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	819
Psp6I	CCWGG	2 cut(s)	535, 747
PspGI	CCWGG	2 cut(s)	535, 747
PspN4I	GGNNCC	1 cut(s)	820
PspPI	GGNCC	2 cut(s)	439, 819
PspPPI	RGGWCCY	1 cut(s)	819
PsuI	RGATCY	2 cut(s)	162, 539
RsaI	GTAC	2 cut(s)	344, 851
RsaNI	GTAC	2 cut(s)	343, 850
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	4 cut(s)	162, 539, 700, 799
Sau96I	GGNCC	2 cut(s)	439, 819
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	2 cut(s)	323, 366
ScrFI	CCNGG	2 cut(s)	537, 749
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	3 cut(s)	4, 170, 761
SinI	GGWCC	2 cut(s)	439, 819
SmlI	CTYRAG	2 cut(s)	413, 627
SmoI	CTYRAG	2 cut(s)	413, 627
Sse9I	AATT	5 cut(s)	147, 565, 664, 810, 840
SsiI	CCGC	3 cut(s)	420, 454, 484
SspMI	CTAG	3 cut(s)	204, 659, 837
StyD4I	CCNGG	2 cut(s)	535, 747
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	716, 739, 849
TaiI	ACGT	1 cut(s)	255
TasI	AATT	5 cut(s)	147, 565, 664, 810, 840
TatI	WGTACW	2 cut(s)	342, 849
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	616, 721
TseFI	GTSAC	2 cut(s)	106, 315
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	2 cut(s)	106, 315
TspDTI	ATGAA	3 cut(s)	340, 740, 801
TspRI	CASTG	2 cut(s)	616, 721
VpaK11BI	GGWCC	2 cut(s)	439, 819
XceI	RCATGY	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	3 cut(s)	204, 659, 837
ZrmI	AGTACT	1 cut(s)	851
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.