Rh4AG183800

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002752
Physical Location & Seq
Reverse (-)
45734444 .. 45747346
12903 bp
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UTR
Exon/CDS
Intron
Rh4AG183800.1

Sequence Viewer

Length: 270 bp
ATGGACGTACGGTGCGGTGAAACCAAAGAAGAGGTTAGGTCACCACTACTGTATGATGTGAAAAAATTCGAATTATACTATGATTGGATGCATGACGATGAGCATGACATGGATATTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAAAAAACAGTGAGGTGAGTGAATATAGTTATCGTTACGTGTGGGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI Rpn3_C

Protein Analysis

89

Amino Acids

10.69

Weight (kDa)

4.68

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PSMD3_N PF25573 31 - 83 1.8e-07 PSMD3-like, N-terminal TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 9
AflIII ACRYGT 1 cut(s) 255
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 29, 33, 244
AsuII TTCGAA 1 cut(s) 69
BclI TGATCA 1 cut(s) 211
BfaI CTAG 1 cut(s) 170
BmsI GCATC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 256
BseGI GGATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 156
BsiWI CGTACG 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 69
BssMI GATC 1 cut(s) 211
Bst4CI ACNGT 3 cut(s) 12, 51, 227
Bst6I CTCTTC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 165
BstEII GGTNACC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 158
BstPI GGTNACC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 232
Csp6I GTAC 1 cut(s) 8
CviAII CATG 4 cut(s) 92, 104, 109, 155
CviJI RGCY 1 cut(s) 169
CviKI_1 RGCY 1 cut(s) 169
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco91I GGTNACC 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 93
FaeI CATG 4 cut(s) 95, 107, 112, 158
FaiI YATR 8 cut(s) 54, 76, 81, 93, 105, 110, 156, 243
FatI CATG 4 cut(s) 91, 103, 108, 154
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 100
FspBI CTAG 1 cut(s) 170
Hin1II CATG 4 cut(s) 95, 107, 112, 158
HphI GGTGA 3 cut(s) 29, 33, 244
Hpy188I TCNGA 2 cut(s) 207, 216
HpyCH4III ACNGT 3 cut(s) 12, 51, 227
HpyCH4IV ACGT 2 cut(s) 6, 255
HpyCH4V TGCA 2 cut(s) 91, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 2 cut(s) 6, 255
Hsp92II CATG 4 cut(s) 95, 107, 112, 158
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 2 cut(s) 176, 177
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 6, 255
MaeIII GTNAC 2 cut(s) 39, 251
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 41
MluCI AATT 2 cut(s) 65, 71
MnlI CCTC 3 cut(s) 25, 169, 223
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 211
NlaIII CATG 4 cut(s) 95, 107, 112, 158
NmuCI GTSAC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 1 cut(s) 158
NspV TTCGAA 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 65
Pfl23II CGTACG 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 256
PspEI GGTNACC 1 cut(s) 39
PspLI CGTACG 1 cut(s) 7
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 96
Sau3AI GATC 1 cut(s) 211
SetI ASST 6 cut(s) 9, 36, 41, 171, 234, 258
SfaNI GCATC 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 2 cut(s) 65, 71
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 170
TaaI ACNGT 3 cut(s) 12, 51, 227
TaiI ACGT 2 cut(s) 9, 258
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 65, 71
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspRI CASTG 1 cut(s) 232
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.