26S proteasome non-ATPase regulatory subunit 3 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20200 AT1G75990 |
| fragaria_vesca | FvH4_2g15510 FvH4_2g15510 |
| malus_domestica | MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1 |
| prunus_persica | Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1 |
| pyrus_communis | pycom05g11770 pycom06g20010 pycom10g10860 |
| rosa_chinensis | RchiOBHm_Chr6g0278511 |
| rosa_laevigata | RLG00000007962 RLG00000013222 |
| rosa_multiflora | Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320 |
| rosa_rugosa | Rorug06G0117600 |
| rosa_samantha | Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300 |
| rosa_wichuraiana | Rw0G003080 Rw4G016480 Rw6G019790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1079 |
| Acc36I | ACCTGC | 1 cut(s) | 346 |
| AciI | CCGC | 4 cut(s) | 426, 1016, 1334, 1355 |
| AclWI | GGATC | 2 cut(s) | 121, 238 |
| AcoI | YGGCCR | 1 cut(s) | 570 |
| AcsI | RAATTY | 2 cut(s) | 79, 310 |
| AcuI | CTGAAG | 1 cut(s) | 255 |
| AdeI | CACNNNGTG | 1 cut(s) | 1060 |
| AfaI | GTAC | 5 cut(s) | 401, 547, 650, 722, 764 |
| AflII | CTTAAG | 1 cut(s) | 505 |
| AgsI | TTSAA | 4 cut(s) | 85, 613, 755, 1318 |
| AjnI | CCWGG | 2 cut(s) | 226, 597 |
| Alw21I | GWGCWC | 3 cut(s) | 348, 1345, 1425 |
| Alw26I | GTCTC | 7 cut(s) | 58, 161, 254, 788, 1129, 1246, 1251 |
| AlwI | GGATC | 2 cut(s) | 121, 238 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1160 |
| Ama87I | CYCGRG | 2 cut(s) | 347, 1297 |
| AoxI | GGCC | 4 cut(s) | 408, 570, 595, 929 |
| ApeKI | GCWGC | 2 cut(s) | 95, 794 |
| ApoI | RAATTY | 2 cut(s) | 79, 310 |
| AspLEI | GCGC | 3 cut(s) | 582, 682, 1080 |
| AspS9I | GGNCC | 1 cut(s) | 595 |
| AsuHPI | GGTGA | 4 cut(s) | 151, 554, 887, 977 |
| AsuNHI | GCTAGC | 1 cut(s) | 428 |
| AvaI | CYCGRG | 2 cut(s) | 347, 1297 |
| BanII | GRGCYC | 2 cut(s) | 348, 1425 |
| BauI | CACGAG | 1 cut(s) | 144 |
| BbsI | GAAGAC | 3 cut(s) | 926, 1026, 1452 |
| Bbv12I | GWGCWC | 3 cut(s) | 348, 1345, 1425 |
| BbvCI | CCTCAGC | 1 cut(s) | 1440 |
| BbvI | GCAGC | 2 cut(s) | 107, 781 |
| BccI | CCATC | 2 cut(s) | 1190, 1223 |
| BciT130I | CCWGG | 2 cut(s) | 228, 599 |
| BclI | TGATCA | 2 cut(s) | 388, 1062 |
| BcoDI | GTCTC | 7 cut(s) | 58, 161, 254, 788, 1129, 1246, 1251 |
| BfaI | CTAG | 3 cut(s) | 429, 798, 1462 |
| BfmI | CTRYAG | 3 cut(s) | 74, 339, 1112 |
| BfoI | RGCGCY | 1 cut(s) | 683 |
| BfrI | CTTAAG | 1 cut(s) | 505 |
| BfuAI | ACCTGC | 1 cut(s) | 346 |
| BisI | GCNGC | 2 cut(s) | 96, 795 |
| BlsI | GCNGC | 2 cut(s) | 97, 796 |
| BmcAI | AGTACT | 1 cut(s) | 547 |
| Bme1390I | CCNGG | 2 cut(s) | 228, 599 |
| BmeT110I | CYCGRG | 2 cut(s) | 347, 1297 |
| BmgT120I | GGNCC | 1 cut(s) | 595 |
| BmiI | GGNNCC | 3 cut(s) | 190, 225, 1352 |
| BmrFI | CCNGG | 2 cut(s) | 228, 599 |
| BmrI | ACTGGG | 1 cut(s) | 1148 |
| BmsI | GCATC | 6 cut(s) | 311, 340, 760, 824, 1153, 1182 |
| BmtI | GCTAGC | 1 cut(s) | 432 |
| BmuI | ACTGGG | 1 cut(s) | 1148 |
| BpiI | GAAGAC | 3 cut(s) | 926, 1026, 1452 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 683, 715 |
| BpmI | CTGGAG | 1 cut(s) | 1084 |
| Bpu10I | CCTNAGC | 2 cut(s) | 327, 1440 |
| BpuEI | CTTGAG | 1 cut(s) | 779 |
| BsaAI | YACGTR | 1 cut(s) | 542 |
| BsaI | GGTCTC | 1 cut(s) | 1246 |
| BsaJI | CCNNGG | 2 cut(s) | 733, 1245 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1250, 1280 |
| Bse1I | ACTGG | 3 cut(s) | 115, 835, 1154 |
| Bse3DI | GCAATG | 2 cut(s) | 432, 474 |
| BseBI | CCWGG | 2 cut(s) | 228, 599 |
| BseDI | CCNNGG | 2 cut(s) | 733, 1245 |
| BseGI | GGATG | 1 cut(s) | 1123 |
| BseMI | GCAATG | 2 cut(s) | 432, 474 |
| BseMII | CTCAG | 6 cut(s) | 20, 917, 1124, 1158, 1337, 1431 |
| BseNI | ACTGG | 3 cut(s) | 115, 835, 1154 |
| BseRI | GAGGAG | 4 cut(s) | 312, 776, 1400, 1433 |
| BseXI | GCAGC | 2 cut(s) | 107, 781 |
| BshFI | GGCC | 4 cut(s) | 410, 572, 597, 931 |
| BsiHKAI | GWGCWC | 3 cut(s) | 348, 1345, 1425 |
| BsiHKCI | CYCGRG | 2 cut(s) | 347, 1297 |
| BsmAI | GTCTC | 7 cut(s) | 58, 161, 254, 788, 1129, 1246, 1251 |
| BsmBI | CGTCTC | 3 cut(s) | 58, 161, 254 |
| BsnI | GGCC | 4 cut(s) | 410, 572, 597, 931 |
| Bso31I | GGTCTC | 1 cut(s) | 1246 |
| BsoBI | CYCGRG | 2 cut(s) | 347, 1297 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 1345, 1425 |
| Bsp143I | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| BspACI | CCGC | 4 cut(s) | 426, 1016, 1334, 1355 |
| BspANI | GGCC | 4 cut(s) | 410, 572, 597, 931 |
| BspCNI | CTCAG | 6 cut(s) | 19, 916, 1125, 1157, 1338, 1432 |
| BspLI | GGNNCC | 3 cut(s) | 190, 225, 1352 |
| BspMAI | CTGCAG | 1 cut(s) | 343 |
| BspMI | ACCTGC | 1 cut(s) | 346 |
| BspOI | GCTAGC | 1 cut(s) | 432 |
| BspPI | GGATC | 2 cut(s) | 121, 238 |
| BspQI | GCTCTTC | 1 cut(s) | 564 |
| BspTI | CTTAAG | 1 cut(s) | 505 |
| BspTNI | GGTCTC | 1 cut(s) | 1246 |
| BsrDI | GCAATG | 2 cut(s) | 432, 474 |
| BsrI | ACTGG | 3 cut(s) | 115, 835, 1154 |
| BssECI | CCNNGG | 2 cut(s) | 733, 1245 |
| BssMI | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| BssSI | CACGAG | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 2 cut(s) | 733, 1245 |
| Bst2BI | CACGAG | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 2 cut(s) | 228, 599 |
| Bst4CI | ACNGT | 4 cut(s) | 163, 466, 711, 1232 |
| Bst6I | CTCTTC | 6 cut(s) | 205, 259, 263, 555, 564, 1410 |
| BstAFI | CTTAAG | 1 cut(s) | 505 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 812 |
| BstBAI | YACGTR | 1 cut(s) | 542 |
| BstC8I | GCNNGC | 3 cut(s) | 430, 439, 1425 |
| BstDEI | CTNAG | 8 cut(s) | 6, 327, 903, 926, 1133, 1144, 1346, 1440 |
| BstF5I | GGATG | 1 cut(s) | 1123 |
| BstH2I | RGCGCY | 1 cut(s) | 683 |
| BstHHI | GCGC | 3 cut(s) | 582, 682, 1080 |
| BstKTI | GATC | 9 cut(s) | 116, 198, 233, 391, 529, 674, 744, 893, 1065 |
| BstMAI | GTCTC | 7 cut(s) | 58, 161, 254, 788, 1129, 1246, 1251 |
| BstMBI | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 434, 438, 447, 803, 812, 1086, 1208, 1340, 1363 |
| BstNI | CCWGG | 2 cut(s) | 228, 599 |
| BstSCI | CCNGG | 2 cut(s) | 226, 597 |
| BstSFI | CTRYAG | 3 cut(s) | 74, 339, 1112 |
| BstSNI | TACGTA | 1 cut(s) | 542 |
| BstV1I | GCAGC | 2 cut(s) | 107, 781 |
| BstV2I | GAAGAC | 3 cut(s) | 926, 1026, 1452 |
| BstX2I | RGATCY | 2 cut(s) | 113, 230 |
| BstYI | RGATCY | 2 cut(s) | 113, 230 |
| BsuRI | GGCC | 4 cut(s) | 410, 572, 597, 931 |
| BtsCI | GGATG | 1 cut(s) | 1123 |
| BtsI | GCAGTG | 1 cut(s) | 575 |
| BtsIMutI | CAGTG | 4 cut(s) | 575, 842, 1161, 1343 |
| BveI | ACCTGC | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 3 cut(s) | 430, 439, 1425 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1160 |
| CfoI | GCGC | 3 cut(s) | 582, 682, 1080 |
| Cfr13I | GGNCC | 1 cut(s) | 595 |
| CseI | GACGC | 2 cut(s) | 143, 1217 |
| Csp6I | GTAC | 5 cut(s) | 400, 546, 649, 721, 763 |
| CviAII | CATG | 3 cut(s) | 281, 286, 1435 |
| CviQI | GTAC | 5 cut(s) | 400, 546, 649, 721, 763 |
| DdeI | CTNAG | 8 cut(s) | 6, 327, 903, 926, 1133, 1144, 1346, 1440 |
| DpnI | GATC | 9 cut(s) | 115, 197, 232, 390, 528, 673, 743, 892, 1064 |
| DpnII | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| DraIII | CACNNNGTG | 1 cut(s) | 1060 |
| EaeI | YGGCCR | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 6 cut(s) | 205, 259, 263, 555, 564, 1410 |
| EarI | CTCTTC | 6 cut(s) | 205, 259, 263, 555, 564, 1410 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 1423 |
| Eco105I | TACGTA | 1 cut(s) | 542 |
| Eco130I | CCWWGG | 2 cut(s) | 733, 1245 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 1425 |
| Eco31I | GGTCTC | 1 cut(s) | 1246 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 1423 |
| Eco57I | CTGAAG | 1 cut(s) | 255 |
| Eco88I | CYCGRG | 2 cut(s) | 347, 1297 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 1423 |
| EcoRI | GAATTC | 1 cut(s) | 310 |
| EcoRII | CCWGG | 2 cut(s) | 226, 597 |
| EcoT14I | CCWWGG | 2 cut(s) | 733, 1245 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 1425 |
| ErhI | CCWWGG | 2 cut(s) | 733, 1245 |
| Esp3I | CGTCTC | 3 cut(s) | 58, 161, 254 |
| FaeI | CATG | 3 cut(s) | 284, 289, 1438 |
| FaiI | YATR | 9 cut(s) | 120, 282, 287, 857, 934, 1040, 1238, 1322, 1436 |
| FatI | CATG | 3 cut(s) | 280, 285, 1434 |
| FauI | CCCGC | 1 cut(s) | 1362 |
| FbaI | TGATCA | 2 cut(s) | 388, 1062 |
| Fnu4HI | GCNGC | 2 cut(s) | 96, 795 |
| FokI | GGATG | 1 cut(s) | 1130 |
| FriOI | GRGCYC | 2 cut(s) | 348, 1425 |
| Fsp4HI | GCNGC | 2 cut(s) | 96, 795 |
| FspBI | CTAG | 3 cut(s) | 429, 798, 1462 |
| FspI | TGCGCA | 1 cut(s) | 1079 |
| GlaI | GCGC | 3 cut(s) | 581, 681, 1079 |
| GluI | GCNGC | 2 cut(s) | 96, 795 |
| GsuI | CTGGAG | 1 cut(s) | 1084 |
| HaeII | RGCGCY | 1 cut(s) | 683 |
| HaeIII | GGCC | 4 cut(s) | 410, 572, 597, 931 |
| HgaI | GACGC | 2 cut(s) | 143, 1217 |
| HhaI | GCGC | 3 cut(s) | 582, 682, 1080 |
| Hin1II | CATG | 3 cut(s) | 284, 289, 1438 |
| Hin6I | GCGC | 3 cut(s) | 580, 680, 1078 |
| HinP1I | GCGC | 3 cut(s) | 580, 680, 1078 |
| HphI | GGTGA | 4 cut(s) | 151, 554, 887, 977 |
| Hpy166II | GTNNAC | 2 cut(s) | 454, 765 |
| Hpy188I | TCNGA | 8 cut(s) | 102, 235, 393, 830, 906, 1046, 1052, 1067 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 349, 745, 982, 1101 |
| Hpy8I | GTNNAC | 2 cut(s) | 454, 765 |
| Hpy99I | CGWCG | 5 cut(s) | 53, 138, 590, 1181, 1211 |
| HpyAV | CCTTC | 4 cut(s) | 79, 168, 1318, 1389 |
| HpyCH4III | ACNGT | 4 cut(s) | 163, 466, 711, 1232 |
| HpyCH4IV | ACGT | 3 cut(s) | 12, 541, 1059 |
| HpyCH4V | TGCA | 8 cut(s) | 95, 341, 533, 773, 815, 840, 1166, 1324 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 434, 438, 447, 803, 812, 1086, 1208, 1340, 1363 |
| HpyF3I | CTNAG | 8 cut(s) | 6, 327, 903, 926, 1133, 1144, 1346, 1440 |
| HpySE526I | ACGT | 3 cut(s) | 12, 541, 1059 |
| Hsp92II | CATG | 3 cut(s) | 284, 289, 1438 |
| HspAI | GCGC | 3 cut(s) | 580, 680, 1078 |
| Ksp22I | TGATCA | 2 cut(s) | 388, 1062 |
| Kzo9I | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| LguI | GCTCTTC | 1 cut(s) | 564 |
| LmnI | GCTCC | 5 cut(s) | 64, 325, 973, 1199, 1420 |
| Lsp1109I | GCAGC | 2 cut(s) | 107, 781 |
| LweI | GCATC | 6 cut(s) | 311, 340, 760, 824, 1153, 1182 |
| MaeI | CTAG | 3 cut(s) | 429, 798, 1462 |
| MaeII | ACGT | 3 cut(s) | 12, 541, 1059 |
| MaeIII | GTNAC | 2 cut(s) | 509, 965 |
| MalI | GATC | 9 cut(s) | 115, 197, 232, 390, 528, 673, 743, 892, 1064 |
| MboI | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| MflI | RGATCY | 2 cut(s) | 113, 230 |
| MhlI | GDGCHC | 3 cut(s) | 348, 1345, 1425 |
| MluCI | AATT | 6 cut(s) | 79, 310, 485, 590, 628, 960 |
| MlyI | GAGTC | 4 cut(s) | 790, 916, 1021, 1041 |
| MmeI | TCCRAC | 2 cut(s) | 145, 1075 |
| MseI | TTAA | 2 cut(s) | 506, 1293 |
| MspCI | CTTAAG | 1 cut(s) | 505 |
| MspR9I | CCNGG | 2 cut(s) | 228, 599 |
| MvaI | CCWGG | 2 cut(s) | 228, 599 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 434, 438, 447, 803, 812, 1086, 1208, 1340, 1363 |
| NdeII | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| NheI | GCTAGC | 1 cut(s) | 428 |
| NlaIII | CATG | 3 cut(s) | 284, 289, 1438 |
| NlaIV | GGNNCC | 3 cut(s) | 190, 225, 1352 |
| NmuCI | GTSAC | 1 cut(s) | 965 |
| NsbI | TGCGCA | 1 cut(s) | 1079 |
| PaeR7I | CTCGAG | 2 cut(s) | 347, 1297 |
| PciSI | GCTCTTC | 1 cut(s) | 564 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 142, 151, 1215 |
| PfeI | GAWTC | 5 cut(s) | 613, 751, 825, 831, 1104 |
| PfoI | TCCNGGA | 1 cut(s) | 226 |
| PkrI | GCNGC | 2 cut(s) | 97, 796 |
| PleI | GAGTC | 4 cut(s) | 789, 916, 1021, 1041 |
| PpsI | GAGTC | 4 cut(s) | 789, 916, 1021, 1041 |
| Ppu21I | YACGTR | 1 cut(s) | 542 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 1425 |
| Psp6I | CCWGG | 2 cut(s) | 226, 597 |
| PspGI | CCWGG | 2 cut(s) | 226, 597 |
| PspN4I | GGNNCC | 3 cut(s) | 190, 225, 1352 |
| PspPI | GGNCC | 1 cut(s) | 595 |
| PspXI | VCTCGAGB | 1 cut(s) | 1297 |
| PstI | CTGCAG | 1 cut(s) | 343 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1160 |
| PsuI | RGATCY | 2 cut(s) | 113, 230 |
| RsaI | GTAC | 5 cut(s) | 401, 547, 650, 722, 764 |
| RsaNI | GTAC | 5 cut(s) | 400, 546, 649, 721, 763 |
| SacI | GAGCTC | 2 cut(s) | 348, 1425 |
| SapI | GCTCTTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 2 cut(s) | 506, 1293 |
| SatI | GCNGC | 2 cut(s) | 96, 795 |
| Sau3AI | GATC | 9 cut(s) | 113, 195, 230, 388, 526, 671, 741, 890, 1062 |
| Sau96I | GGNCC | 1 cut(s) | 595 |
| ScaI | AGTACT | 1 cut(s) | 547 |
| SchI | GAGTC | 4 cut(s) | 790, 916, 1021, 1041 |
| ScrFI | CCNGG | 2 cut(s) | 228, 599 |
| SduI | GDGCHC | 3 cut(s) | 348, 1345, 1425 |
| SfaNI | GCATC | 6 cut(s) | 311, 340, 760, 824, 1153, 1182 |
| SfcI | CTRYAG | 3 cut(s) | 74, 339, 1112 |
| Sfr274I | CTCGAG | 2 cut(s) | 347, 1297 |
| SlaI | CTCGAG | 2 cut(s) | 347, 1297 |
| SmlI | CTYRAG | 4 cut(s) | 347, 505, 758, 1297 |
| SmoI | CTYRAG | 4 cut(s) | 347, 505, 758, 1297 |
| SnaBI | TACGTA | 1 cut(s) | 542 |
| Sse9I | AATT | 6 cut(s) | 79, 310, 485, 590, 628, 960 |
| SsiI | CCGC | 4 cut(s) | 426, 1016, 1334, 1355 |
| SspMI | CTAG | 3 cut(s) | 429, 798, 1462 |
| SstI | GAGCTC | 2 cut(s) | 348, 1425 |
| StyD4I | CCNGG | 2 cut(s) | 226, 597 |
| StyI | CCWWGG | 2 cut(s) | 733, 1245 |
| TaaI | ACNGT | 4 cut(s) | 163, 466, 711, 1232 |
| TaiI | ACGT | 3 cut(s) | 15, 544, 1062 |
| TaqI | TCGA | 6 cut(s) | 308, 348, 685, 1206, 1218, 1298 |
| TasI | AATT | 6 cut(s) | 79, 310, 485, 590, 628, 960 |
| TatI | WGTACW | 3 cut(s) | 399, 545, 762 |
| TfiI | GAWTC | 5 cut(s) | 613, 751, 825, 831, 1104 |
| Tru1I | TTAA | 2 cut(s) | 506, 1293 |
| Tru9I | TTAA | 2 cut(s) | 506, 1293 |
| TscAI | CASTG | 4 cut(s) | 582, 842, 1161, 1350 |
| TseFI | GTSAC | 1 cut(s) | 965 |
| TseI | GCWGC | 2 cut(s) | 95, 794 |
| Tsp45I | GTSAC | 1 cut(s) | 965 |
| TspDTI | ATGAA | 6 cut(s) | 35, 291, 355, 1290, 1344, 1418 |
| TspGWI | ACGGA | 3 cut(s) | 37, 122, 181 |
| TspRI | CASTG | 4 cut(s) | 582, 842, 1161, 1350 |
| Vha464I | CTTAAG | 1 cut(s) | 505 |
| XapI | RAATTY | 2 cut(s) | 79, 310 |
| XhoI | CTCGAG | 2 cut(s) | 347, 1297 |
| XspI | CTAG | 3 cut(s) | 429, 798, 1462 |
| ZrmI | AGTACT | 1 cut(s) | 547 |