AT1G75990

26S proteasome non-ATPase regulatory subunit 3 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
28524404 .. 28526848
2445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75990.1

Sequence Viewer

Length: 1464 bp
ATGACTCAGGACGTAGAGATGAAAGATAACCAAACCCCAACGCAATCCGTCGTCTCTGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACTGGATCTTATACAAAGGAAGTCCGTCGTATTGCTCGTGCTGTGCGTCTCACCGTTGGACTACGAAGGAAGCTCACGGGTTCCGTGATCTCTTCTTTCCTTGATTTCGCTTTGGTTCCTGGATCTGAAGCTCACACTCGTCTCTCTTCTTTTGTGCCGAAGAGTGATGAACATGACATGGAAGTTGATACAGCATCATCGAATTCCCAAGCTCCTCCTAAGCATCTACCTGCAGAGCTCGAGATTTACTGCTACTTCATTGTTCTTCTTTTTCTCATTGATCAGAAAAAGTACAACGAGGCCAAAGTTTGTTCTACCGCTAGCATTGCTCGCCTCAAAAGCGTAAACAGGAGAACCGTTGATGTCATTGCTTCCAAATTGTATTTTTACTACTCCTTAAGTTACGAGCTAACTAATGATCTTGCAGAGATACGTAGTACTCTTCTTGCTCTTCACCATTCGGCCACACTGCGCCACGACGAATTGGGCCAGGAAACACTTTTGAATCTGTTGCTTCGCAATTATCTACACTACAACCTGTACGACCAAGCAGAGAAGTTGAGATCAAAAGCGCCTCGATTTGAGGCACACTCTAACCAACAGTTTTGTAGGTACTTGTTTTACCTTGGCAAGATCAGGACGATTCAACTTGAGTACACCGATGCAAAAGAGAGTCTCCTCCAAGCTGCTAGGAAAGCACCTGTTGCATCTCTGGGATTCAGAATCCAGTGCAACAAGTGGGCTATCATAGTTCGGCTGTTGTTGGGTGAAATACCTGAACGATCTATCTTCACTCAGAAAGGAATGGAGAAGACTCTTAGGCCATATTTTGAGCTGACCAACGCTGTGAGAATTGGTGACTTGGAGCTGTTCGGGAAAATCCAAGAGAAGTTTGCCAAAACATTTGCGGAAGACAGGACTCACAACCTCATAGTCAGACTCCGACACAACGTGATCAGAACAGGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTACAGGATGTTGCTCAAAAGCTGAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATCGTCGCTAAAGCCATTAGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGTTGTATGGTCTCCAAGGAAACAGGAGACATCTACTCCACTAATGAACCACAGACTGCGTTTAACTCGAGGATTGCCTTCTGTTTGAATATGCACAATGAAGCGGTTAGAGCACTGAGGTTCCCGCCAAACACGCACAGGGAGAAAGAGAGCGAGGAGAAAAGAAGGGAGATGAAACAGCAAGAAGAGGAGCTCGCTAAATACATGGCTGAGGAAGACGATGATGATTTCTAG

Protein Analysis

487

Amino Acids

55.59

Weight (kDa)

8.52

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PSMD3_N PF25573 22 - 316 6.8e-105 PSMD3-like, N-terminal TPR repeats
PCI PF01399 335 - 416 1.4e-20 PCI domain
Rpn3_C PF08375 420 - 486 1.2e-25 Proteasome regulatory subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1079
Acc36I ACCTGC 1 cut(s) 346
AciI CCGC 4 cut(s) 426, 1016, 1334, 1355
AclWI GGATC 2 cut(s) 121, 238
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 2 cut(s) 79, 310
AcuI CTGAAG 1 cut(s) 255
AdeI CACNNNGTG 1 cut(s) 1060
AfaI GTAC 5 cut(s) 401, 547, 650, 722, 764
AflII CTTAAG 1 cut(s) 505
AgsI TTSAA 4 cut(s) 85, 613, 755, 1318
AjnI CCWGG 2 cut(s) 226, 597
Alw21I GWGCWC 3 cut(s) 348, 1345, 1425
Alw26I GTCTC 7 cut(s) 58, 161, 254, 788, 1129, 1246, 1251
AlwI GGATC 2 cut(s) 121, 238
AlwNI CAGNNNCTG 1 cut(s) 1160
Ama87I CYCGRG 2 cut(s) 347, 1297
AoxI GGCC 4 cut(s) 408, 570, 595, 929
ApeKI GCWGC 2 cut(s) 95, 794
ApoI RAATTY 2 cut(s) 79, 310
AspLEI GCGC 3 cut(s) 582, 682, 1080
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 4 cut(s) 151, 554, 887, 977
AsuNHI GCTAGC 1 cut(s) 428
AvaI CYCGRG 2 cut(s) 347, 1297
BanII GRGCYC 2 cut(s) 348, 1425
BauI CACGAG 1 cut(s) 144
BbsI GAAGAC 3 cut(s) 926, 1026, 1452
Bbv12I GWGCWC 3 cut(s) 348, 1345, 1425
BbvCI CCTCAGC 1 cut(s) 1440
BbvI GCAGC 2 cut(s) 107, 781
BccI CCATC 2 cut(s) 1190, 1223
BciT130I CCWGG 2 cut(s) 228, 599
BclI TGATCA 2 cut(s) 388, 1062
BcoDI GTCTC 7 cut(s) 58, 161, 254, 788, 1129, 1246, 1251
BfaI CTAG 3 cut(s) 429, 798, 1462
BfmI CTRYAG 3 cut(s) 74, 339, 1112
BfoI RGCGCY 1 cut(s) 683
BfrI CTTAAG 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 96, 795
BlsI GCNGC 2 cut(s) 97, 796
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 228, 599
BmeT110I CYCGRG 2 cut(s) 347, 1297
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 190, 225, 1352
BmrFI CCNGG 2 cut(s) 228, 599
BmrI ACTGGG 1 cut(s) 1148
BmsI GCATC 6 cut(s) 311, 340, 760, 824, 1153, 1182
BmtI GCTAGC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 1148
BpiI GAAGAC 3 cut(s) 926, 1026, 1452
BplI GAGNNNNNCTC 2 cut(s) 683, 715
BpmI CTGGAG 1 cut(s) 1084
Bpu10I CCTNAGC 2 cut(s) 327, 1440
BpuEI CTTGAG 1 cut(s) 779
BsaAI YACGTR 1 cut(s) 542
BsaI GGTCTC 1 cut(s) 1246
BsaJI CCNNGG 2 cut(s) 733, 1245
BsaXI ACNNNNNCTCC 2 cut(s) 1250, 1280
Bse1I ACTGG 3 cut(s) 115, 835, 1154
Bse3DI GCAATG 2 cut(s) 432, 474
BseBI CCWGG 2 cut(s) 228, 599
BseDI CCNNGG 2 cut(s) 733, 1245
BseGI GGATG 1 cut(s) 1123
BseMI GCAATG 2 cut(s) 432, 474
BseMII CTCAG 6 cut(s) 20, 917, 1124, 1158, 1337, 1431
BseNI ACTGG 3 cut(s) 115, 835, 1154
BseRI GAGGAG 4 cut(s) 312, 776, 1400, 1433
BseXI GCAGC 2 cut(s) 107, 781
BshFI GGCC 4 cut(s) 410, 572, 597, 931
BsiHKAI GWGCWC 3 cut(s) 348, 1345, 1425
BsiHKCI CYCGRG 2 cut(s) 347, 1297
BsmAI GTCTC 7 cut(s) 58, 161, 254, 788, 1129, 1246, 1251
BsmBI CGTCTC 3 cut(s) 58, 161, 254
BsnI GGCC 4 cut(s) 410, 572, 597, 931
Bso31I GGTCTC 1 cut(s) 1246
BsoBI CYCGRG 2 cut(s) 347, 1297
Bsp1286I GDGCHC 3 cut(s) 348, 1345, 1425
Bsp143I GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
BspACI CCGC 4 cut(s) 426, 1016, 1334, 1355
BspANI GGCC 4 cut(s) 410, 572, 597, 931
BspCNI CTCAG 6 cut(s) 19, 916, 1125, 1157, 1338, 1432
BspLI GGNNCC 3 cut(s) 190, 225, 1352
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 346
BspOI GCTAGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 121, 238
BspQI GCTCTTC 1 cut(s) 564
BspTI CTTAAG 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 1246
BsrDI GCAATG 2 cut(s) 432, 474
BsrI ACTGG 3 cut(s) 115, 835, 1154
BssECI CCNNGG 2 cut(s) 733, 1245
BssMI GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 2 cut(s) 733, 1245
Bst2BI CACGAG 1 cut(s) 144
Bst2UI CCWGG 2 cut(s) 228, 599
Bst4CI ACNGT 4 cut(s) 163, 466, 711, 1232
Bst6I CTCTTC 6 cut(s) 205, 259, 263, 555, 564, 1410
BstAFI CTTAAG 1 cut(s) 505
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 430, 439, 1425
BstDEI CTNAG 8 cut(s) 6, 327, 903, 926, 1133, 1144, 1346, 1440
BstF5I GGATG 1 cut(s) 1123
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 3 cut(s) 582, 682, 1080
BstKTI GATC 9 cut(s) 116, 198, 233, 391, 529, 674, 744, 893, 1065
BstMAI GTCTC 7 cut(s) 58, 161, 254, 788, 1129, 1246, 1251
BstMBI GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
BstMWI GCNNNNNNNGC 9 cut(s) 434, 438, 447, 803, 812, 1086, 1208, 1340, 1363
BstNI CCWGG 2 cut(s) 228, 599
BstSCI CCNGG 2 cut(s) 226, 597
BstSFI CTRYAG 3 cut(s) 74, 339, 1112
BstSNI TACGTA 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 107, 781
BstV2I GAAGAC 3 cut(s) 926, 1026, 1452
BstX2I RGATCY 2 cut(s) 113, 230
BstYI RGATCY 2 cut(s) 113, 230
BsuRI GGCC 4 cut(s) 410, 572, 597, 931
BtsCI GGATG 1 cut(s) 1123
BtsI GCAGTG 1 cut(s) 575
BtsIMutI CAGTG 4 cut(s) 575, 842, 1161, 1343
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 3 cut(s) 430, 439, 1425
CaiI CAGNNNCTG 1 cut(s) 1160
CfoI GCGC 3 cut(s) 582, 682, 1080
Cfr13I GGNCC 1 cut(s) 595
CseI GACGC 2 cut(s) 143, 1217
Csp6I GTAC 5 cut(s) 400, 546, 649, 721, 763
CviAII CATG 3 cut(s) 281, 286, 1435
CviQI GTAC 5 cut(s) 400, 546, 649, 721, 763
DdeI CTNAG 8 cut(s) 6, 327, 903, 926, 1133, 1144, 1346, 1440
DpnI GATC 9 cut(s) 115, 197, 232, 390, 528, 673, 743, 892, 1064
DpnII GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
DraIII CACNNNGTG 1 cut(s) 1060
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 6 cut(s) 205, 259, 263, 555, 564, 1410
EarI CTCTTC 6 cut(s) 205, 259, 263, 555, 564, 1410
Ecl136II GAGCTC 2 cut(s) 346, 1423
Eco105I TACGTA 1 cut(s) 542
Eco130I CCWWGG 2 cut(s) 733, 1245
Eco24I GRGCYC 2 cut(s) 348, 1425
Eco31I GGTCTC 1 cut(s) 1246
Eco53kI GAGCTC 2 cut(s) 346, 1423
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 2 cut(s) 347, 1297
EcoICRI GAGCTC 2 cut(s) 346, 1423
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 226, 597
EcoT14I CCWWGG 2 cut(s) 733, 1245
EcoT38I GRGCYC 2 cut(s) 348, 1425
ErhI CCWWGG 2 cut(s) 733, 1245
Esp3I CGTCTC 3 cut(s) 58, 161, 254
FaeI CATG 3 cut(s) 284, 289, 1438
FaiI YATR 9 cut(s) 120, 282, 287, 857, 934, 1040, 1238, 1322, 1436
FatI CATG 3 cut(s) 280, 285, 1434
FauI CCCGC 1 cut(s) 1362
FbaI TGATCA 2 cut(s) 388, 1062
Fnu4HI GCNGC 2 cut(s) 96, 795
FokI GGATG 1 cut(s) 1130
FriOI GRGCYC 2 cut(s) 348, 1425
Fsp4HI GCNGC 2 cut(s) 96, 795
FspBI CTAG 3 cut(s) 429, 798, 1462
FspI TGCGCA 1 cut(s) 1079
GlaI GCGC 3 cut(s) 581, 681, 1079
GluI GCNGC 2 cut(s) 96, 795
GsuI CTGGAG 1 cut(s) 1084
HaeII RGCGCY 1 cut(s) 683
HaeIII GGCC 4 cut(s) 410, 572, 597, 931
HgaI GACGC 2 cut(s) 143, 1217
HhaI GCGC 3 cut(s) 582, 682, 1080
Hin1II CATG 3 cut(s) 284, 289, 1438
Hin6I GCGC 3 cut(s) 580, 680, 1078
HinP1I GCGC 3 cut(s) 580, 680, 1078
HphI GGTGA 4 cut(s) 151, 554, 887, 977
Hpy166II GTNNAC 2 cut(s) 454, 765
Hpy188I TCNGA 8 cut(s) 102, 235, 393, 830, 906, 1046, 1052, 1067
Hpy188III TCNNGA 5 cut(s) 8, 349, 745, 982, 1101
Hpy8I GTNNAC 2 cut(s) 454, 765
Hpy99I CGWCG 5 cut(s) 53, 138, 590, 1181, 1211
HpyAV CCTTC 4 cut(s) 79, 168, 1318, 1389
HpyCH4III ACNGT 4 cut(s) 163, 466, 711, 1232
HpyCH4IV ACGT 3 cut(s) 12, 541, 1059
HpyCH4V TGCA 8 cut(s) 95, 341, 533, 773, 815, 840, 1166, 1324
HpyF10VI GCNNNNNNNGC 9 cut(s) 434, 438, 447, 803, 812, 1086, 1208, 1340, 1363
HpyF3I CTNAG 8 cut(s) 6, 327, 903, 926, 1133, 1144, 1346, 1440
HpySE526I ACGT 3 cut(s) 12, 541, 1059
Hsp92II CATG 3 cut(s) 284, 289, 1438
HspAI GCGC 3 cut(s) 580, 680, 1078
Ksp22I TGATCA 2 cut(s) 388, 1062
Kzo9I GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
LguI GCTCTTC 1 cut(s) 564
LmnI GCTCC 5 cut(s) 64, 325, 973, 1199, 1420
Lsp1109I GCAGC 2 cut(s) 107, 781
LweI GCATC 6 cut(s) 311, 340, 760, 824, 1153, 1182
MaeI CTAG 3 cut(s) 429, 798, 1462
MaeII ACGT 3 cut(s) 12, 541, 1059
MaeIII GTNAC 2 cut(s) 509, 965
MalI GATC 9 cut(s) 115, 197, 232, 390, 528, 673, 743, 892, 1064
MboI GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
MflI RGATCY 2 cut(s) 113, 230
MhlI GDGCHC 3 cut(s) 348, 1345, 1425
MluCI AATT 6 cut(s) 79, 310, 485, 590, 628, 960
MlyI GAGTC 4 cut(s) 790, 916, 1021, 1041
MmeI TCCRAC 2 cut(s) 145, 1075
MseI TTAA 2 cut(s) 506, 1293
MspCI CTTAAG 1 cut(s) 505
MspR9I CCNGG 2 cut(s) 228, 599
MvaI CCWGG 2 cut(s) 228, 599
MwoI GCNNNNNNNGC 9 cut(s) 434, 438, 447, 803, 812, 1086, 1208, 1340, 1363
NdeII GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
NheI GCTAGC 1 cut(s) 428
NlaIII CATG 3 cut(s) 284, 289, 1438
NlaIV GGNNCC 3 cut(s) 190, 225, 1352
NmuCI GTSAC 1 cut(s) 965
NsbI TGCGCA 1 cut(s) 1079
PaeR7I CTCGAG 2 cut(s) 347, 1297
PciSI GCTCTTC 1 cut(s) 564
PcsI WCGNNNNNNNCGW 3 cut(s) 142, 151, 1215
PfeI GAWTC 5 cut(s) 613, 751, 825, 831, 1104
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 2 cut(s) 97, 796
PleI GAGTC 4 cut(s) 789, 916, 1021, 1041
PpsI GAGTC 4 cut(s) 789, 916, 1021, 1041
Ppu21I YACGTR 1 cut(s) 542
Psp124BI GAGCTC 2 cut(s) 348, 1425
Psp6I CCWGG 2 cut(s) 226, 597
PspGI CCWGG 2 cut(s) 226, 597
PspN4I GGNNCC 3 cut(s) 190, 225, 1352
PspPI GGNCC 1 cut(s) 595
PspXI VCTCGAGB 1 cut(s) 1297
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 1160
PsuI RGATCY 2 cut(s) 113, 230
RsaI GTAC 5 cut(s) 401, 547, 650, 722, 764
RsaNI GTAC 5 cut(s) 400, 546, 649, 721, 763
SacI GAGCTC 2 cut(s) 348, 1425
SapI GCTCTTC 1 cut(s) 564
SaqAI TTAA 2 cut(s) 506, 1293
SatI GCNGC 2 cut(s) 96, 795
Sau3AI GATC 9 cut(s) 113, 195, 230, 388, 526, 671, 741, 890, 1062
Sau96I GGNCC 1 cut(s) 595
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 4 cut(s) 790, 916, 1021, 1041
ScrFI CCNGG 2 cut(s) 228, 599
SduI GDGCHC 3 cut(s) 348, 1345, 1425
SfaNI GCATC 6 cut(s) 311, 340, 760, 824, 1153, 1182
SfcI CTRYAG 3 cut(s) 74, 339, 1112
Sfr274I CTCGAG 2 cut(s) 347, 1297
SlaI CTCGAG 2 cut(s) 347, 1297
SmlI CTYRAG 4 cut(s) 347, 505, 758, 1297
SmoI CTYRAG 4 cut(s) 347, 505, 758, 1297
SnaBI TACGTA 1 cut(s) 542
Sse9I AATT 6 cut(s) 79, 310, 485, 590, 628, 960
SsiI CCGC 4 cut(s) 426, 1016, 1334, 1355
SspMI CTAG 3 cut(s) 429, 798, 1462
SstI GAGCTC 2 cut(s) 348, 1425
StyD4I CCNGG 2 cut(s) 226, 597
StyI CCWWGG 2 cut(s) 733, 1245
TaaI ACNGT 4 cut(s) 163, 466, 711, 1232
TaiI ACGT 3 cut(s) 15, 544, 1062
TaqI TCGA 6 cut(s) 308, 348, 685, 1206, 1218, 1298
TasI AATT 6 cut(s) 79, 310, 485, 590, 628, 960
TatI WGTACW 3 cut(s) 399, 545, 762
TfiI GAWTC 5 cut(s) 613, 751, 825, 831, 1104
Tru1I TTAA 2 cut(s) 506, 1293
Tru9I TTAA 2 cut(s) 506, 1293
TscAI CASTG 4 cut(s) 582, 842, 1161, 1350
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 2 cut(s) 95, 794
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 6 cut(s) 35, 291, 355, 1290, 1344, 1418
TspGWI ACGGA 3 cut(s) 37, 122, 181
TspRI CASTG 4 cut(s) 582, 842, 1161, 1350
Vha464I CTTAAG 1 cut(s) 505
XapI RAATTY 2 cut(s) 79, 310
XhoI CTCGAG 2 cut(s) 347, 1297
XspI CTAG 3 cut(s) 429, 798, 1462
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.