Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Reverse (-)

17142806 .. 17145469

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAACCAGATCAGCTTGGTCCAACACCTAATATCCTCACTTTCTCAAGCTTTGGACATCTTCTACCCACTTGCTGGCCGCCTTGCAGTGACCGAAAATAAAGATAATAGTACCTCGTGTGTTTTCATCAATTGTAATGACGCCGGAATCGAATTCTTACACGCAGCTGCTGATTGTGTCACAGTGGCCGATATCCTAGATTCCGTGGACGTTCCTGATGACATTGTCTGCCAACTCATTCCCATGAATGGTGTTCGGAACTGTGAAGGCATTTCGAAACCATTGCTTGCAGTGCAAGACGATGAGCATGACATGGATGTTGACACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAGAATACAGTGAGGCTAAAGCTTGTGCCACAGCTGGCATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

155

Amino Acids

16.77

Weight (kDa)

4.23

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 99	5.7e-15	Transferase family
TPR_PSMD3_N	PF25573	101 - 152	4e-09	PSMD3-like, N-terminal TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	1 cut(s)	79
AcoI	YGGCCR	2 cut(s)	76, 186
AcsI	RAATTY	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	74, 248
AluBI	AGCT	6 cut(s)	15, 50, 167, 373, 443, 455
AluI	AGCT	6 cut(s)	15, 50, 167, 373, 443, 455
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	76, 186
ApeKI	GCWGC	2 cut(s)	164, 167
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	154, 176
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BclI	TGATCA	1 cut(s)	415
BfaI	CTAG	2 cut(s)	197, 374
BisI	GCNGC	3 cut(s)	79, 165, 168
BlsI	GCNGC	3 cut(s)	80, 166, 169
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	30, 327
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 248
Bse3DI	GCAATG	2 cut(s)	281, 459
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	74, 248
BseMI	GCAATG	2 cut(s)	281, 459
BseMII	CTCAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	154, 176
BshFI	GGCC	2 cut(s)	78, 188
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	74, 248
BsnI	GGCC	2 cut(s)	78, 188
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	9, 415
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	78, 188
BspCNI	CTCAG	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	281, 459
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	9, 415
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst4CI	ACNGT	3 cut(s)	184, 263, 431
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	76, 288, 457
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	2 cut(s)	12, 418
BstMBI	GATC	2 cut(s)	9, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 335, 461
BstNSI	RCATGY	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	154, 176
BsuRI	GGCC	2 cut(s)	78, 188
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	3 cut(s)	93, 297, 324
BtsIMutI	CAGTG	5 cut(s)	93, 189, 297, 324, 436
Cac8I	GCNNGC	3 cut(s)	76, 288, 457
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	19
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	4 cut(s)	244, 308, 313, 359
CviJI	RGCY	9 cut(s)	15, 50, 78, 167, 188, 373, 437, 443, 455
CviKI_1	RGCY	9 cut(s)	15, 50, 78, 167, 188, 373, 437, 443, 455
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	11, 417
DpnII	GATC	2 cut(s)	9, 415
EaeI	YGGCCR	2 cut(s)	76, 186
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	193
FaeI	CATG	4 cut(s)	247, 311, 316, 362
FaiI	YATR	4 cut(s)	245, 309, 314, 360
FatI	CATG	4 cut(s)	243, 307, 312, 358
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	79, 165, 168
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	3 cut(s)	79, 165, 168
FspBI	CTAG	2 cut(s)	197, 374
GluI	GCNGC	3 cut(s)	79, 165, 168
HaeIII	GGCC	2 cut(s)	78, 188
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	247, 311, 316, 362
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	2 cut(s)	48, 441
HinfI	GANTC	2 cut(s)	147, 200
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	2 cut(s)	208, 322
Hpy188I	TCNGA	3 cut(s)	258, 411, 420
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	208, 322
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	3 cut(s)	184, 263, 431
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	4 cut(s)	86, 290, 295, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 335, 461
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	247, 311, 316, 362
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	9, 415
LpnPI	CCDG	7 cut(s)	20, 60, 157, 228, 380, 381, 441
Lsp1109I	GCAGC	2 cut(s)	154, 176
MaeI	CTAG	2 cut(s)	197, 374
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	88, 178
MalI	GATC	2 cut(s)	11, 417
MboI	GATC	2 cut(s)	9, 415
MboII	GAAGA	1 cut(s)	52
MfeI	CAATTG	1 cut(s)	130
MluCI	AATT	2 cut(s)	130, 152
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	46, 124, 373, 427
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	167, 455
MspI	CCGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	292, 335, 461
NdeII	GATC	2 cut(s)	9, 415
NlaIII	CATG	4 cut(s)	247, 311, 316, 362
NmuCI	GTSAC	2 cut(s)	88, 178
NspI	RCATGY	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	147, 200
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	80, 166, 169
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	2 cut(s)	167, 455
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	242
SatI	GCNGC	3 cut(s)	79, 165, 168
Sau3AI	GATC	2 cut(s)	9, 415
Sau96I	GGNCC	1 cut(s)	19
SetI	ASST	9 cut(s)	17, 30, 52, 116, 169, 213, 375, 445, 457
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	45, 342
SmoI	CTYRAG	2 cut(s)	45, 342
Sse9I	AATT	2 cut(s)	130, 152
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	197, 374
TaaI	ACNGT	3 cut(s)	184, 263, 431
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	150, 275
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	130, 152
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	147, 200
TscAI	CASTG	5 cut(s)	93, 189, 297, 331, 436
TseFI	GTSAC	2 cut(s)	88, 178
TseI	GCWGC	2 cut(s)	164, 167
Tsp45I	GTSAC	2 cut(s)	88, 178
TspDTI	ATGAA	3 cut(s)	17, 115, 260
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	5 cut(s)	93, 189, 297, 331, 436
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	2 cut(s)	197, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.