Rmu_sc0002777.1_g000004

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002777.1
Physical Location & Seq
Reverse (-)
12373 .. 17189
4817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002777.1_g000004.1.cds

Sequence Viewer

Length: 1836 bp
atgtggacggacgtgatctcgcaaaaccgacagctgacatggaccccagcgcaccctaacacctatataaatggggtctcaccccacgctcgagccacaagactaccgccaccagaagcacggttgccgccacgccaaccatcagaacacaactccgtgcacgaaacggaacctacgctaccaccaaaatcgagcgagacccaaccgccacaaagacctggtcatccaccaaattggagtccccaagcctggacatcaacaactgacccaacgctaacaccatcctacaagggaagaggagatgacttgcagaggaggctaaaccctaatcgactccgatcactgcggcctctaaattccagtcgctacaagatgactcaagacgtggagatgaaagaggtcccggccccttccaattcagtctcttctactactcccacaactctccactatttgaaggagattgcttcgcttcttgagaccgctgcgtactccaaggaggtcaggcgagttgtccgcgccgttaggctgacgatggcgaagaggcggaagctgagtgtttctgtgctctcggcttttctcagtttcgccttttcgccgggatctgaggctcacacccggttgtcctcctatcttccgaaggacgatgagcatgacatggatgttgatactgcaacctccgcaactctagttcccaagaaacatgcctcgcctgagctagagatttactgctacttgctgctgctgatttttctgattgatcagaaaaaatacagtgaggctaaagcttgtgccacagctggcattgctcgactaaagaacatgaataggagaactattgatgtcctggcatcaaggctctacttctattactctcttagctatgaatatactggtgatcttgcagaaattagagggaaccttcttaatcttcaccggattgcaactttgcgccgtgatgagctgggtcaggagacacttctgaaccttctgcttcgcaattacctgtcatataacctatatgatcaggcagagaaactgaggtccaaggctccccgatttgaggctcactcaaaccagcagttttgtcggtatctcttttatctgggaaagatcagaaccattcagttggagtatactgatgcaaaggagtcccttcttcaagctgctaggaaggcccctgtagctgcccttggctttcgaattcaatgtaacaagtgggcagttattgtacgcttgttgcttggagaaatccctgagaggactgtgtttatgcaaaaaggaatggagaaggctttgaggccatattttgaactaacaaatgctgtgaggattggtgacttggaactattcagaactatagctgacaagttctcgaatgtgtttagctcagacggaacccacaatttgattgtgaggctgcgacataatgttataagaacagggttgcgtaacattagcatctcgtattctcgaatttctctggctgatgttgccaaaaagctgagattggactcccccaaccctgttgctgatgctgaaagtattgtggccaaggcaatccgagatggtgcaattgatgccactctggatcatgcaaatggatatatggtgtcaaaggaaactggagatatctactctacaaatgagccccaagctgcatttgatacaaggattgctttctgcctcaatttgcacaatgatgcagtgcgagcactaaggtttccaccaaattctcacaaggagaaagaaagtgctgagaaaaggagggagagacagcagcaggagcaagagcttgcaaagcatatagctgaggaggatgatgacgaattttga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

611

Amino Acids

69.53

Weight (kDa)

9.31

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1436
AccI GTMKAC 1 cut(s) 1136
AccII CGCG 1 cut(s) 519
AciI CCGC 8 cut(s) 107, 128, 206, 346, 483, 517, 547, 681
AclWI GGATC 2 cut(s) 610, 1599
AcoI YGGCCR 1 cut(s) 1551
AcsI RAATTY 5 cut(s) 355, 1203, 1476, 1732, 1829
AfaI GTAC 2 cut(s) 491, 1233
AfiI CCNNNNNNNGG 2 cut(s) 249, 1063
AgsI TTSAA 4 cut(s) 457, 1163, 1208, 1313
AjiI CACGTC 2 cut(s) 13, 385
AjnI CCWGG 3 cut(s) 217, 248, 846
Alw21I GWGCWC 3 cut(s) 162, 570, 1717
Alw26I GTCTC 6 cut(s) 82, 191, 427, 473, 968, 1768
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 2 cut(s) 610, 1599
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 5 cut(s) 347, 405, 1176, 1301, 1551
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 8 cut(s) 485, 739, 742, 1166, 1187, 1420, 1658, 1780
ApoI RAATTY 5 cut(s) 355, 1203, 1476, 1732, 1829
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AspLEI GCGC 3 cut(s) 52, 521, 954
AspS9I GGNCC 5 cut(s) 42, 400, 406, 1044, 1177
AsuC2I CCSGG 3 cut(s) 404, 600, 619
AsuHPI GGTGA 4 cut(s) 72, 908, 926, 1349
AsuII TTCGAA 1 cut(s) 1201
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 3 cut(s) 42, 400, 1044
BaeGI GKGCMC 1 cut(s) 162
BalI TGGCCA 1 cut(s) 1553
BanII GRGCYC 1 cut(s) 1653
Bbv12I GWGCWC 3 cut(s) 162, 570, 1717
BbvCI CCTCAGC 1 cut(s) 1812
BbvI GCAGC 8 cut(s) 472, 726, 729, 1153, 1174, 1407, 1645, 1792
BccI CCATC 4 cut(s) 148, 289, 529, 1562
BceAI ACGGC 2 cut(s) 506, 939
BcgI CGANNNNNNTGC 2 cut(s) 1070, 1104
BciT130I CCWGG 3 cut(s) 219, 250, 848
BclI TGATCA 2 cut(s) 760, 1024
BcnI CCSGG 3 cut(s) 404, 600, 619
BcoDI GTCTC 6 cut(s) 82, 191, 427, 473, 968, 1768
BfaI CTAG 3 cut(s) 689, 719, 1170
BfmI CTRYAG 2 cut(s) 1182, 1359
Bme1390I CCNGG 6 cut(s) 219, 250, 404, 600, 619, 848
Bme18I GGWCC 3 cut(s) 42, 400, 1044
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 2 cut(s) 13, 385
BmgT120I GGNCC 5 cut(s) 42, 400, 406, 1044, 1177
BmiI GGNNCC 8 cut(s) 44, 171, 402, 408, 920, 1053, 1179, 1399
BmrFI CCNGG 6 cut(s) 219, 250, 404, 600, 619, 848
BmsI GCATC 6 cut(s) 860, 1132, 1470, 1525, 1570, 1693
BplI GAGNNNNNCTC 2 cut(s) 1055, 1087
BpmI CTGGAG 1 cut(s) 1647
Bpu10I CCTNAGC 2 cut(s) 714, 1812
Bpu14I TTCGAA 1 cut(s) 1201
BpuEI CTTGAG 2 cut(s) 363, 497
BpuMI CCSGG 3 cut(s) 404, 600, 619
BsaI GGTCTC 3 cut(s) 82, 191, 473
BsaJI CCNNGG 4 cut(s) 495, 1047, 1192, 1554
BsaWI WCCGGW 1 cut(s) 936
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 1063
Bse1I ACTGG 3 cut(s) 360, 898, 1630
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 3 cut(s) 219, 250, 848
BseDI CCNNGG 4 cut(s) 495, 1047, 1192, 1554
BseGI GGATG 4 cut(s) 223, 281, 667, 1825
BseLI CCNNNNNNNGG 2 cut(s) 249, 1063
BseMI GCAATG 1 cut(s) 804
BseNI ACTGG 3 cut(s) 360, 898, 1630
BseRI GAGGAG 3 cut(s) 312, 328, 1829
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 8 cut(s) 472, 726, 729, 1153, 1174, 1407, 1645, 1792
BseYI CCCAGC 2 cut(s) 46, 964
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 5 cut(s) 349, 407, 1178, 1303, 1553
BsiHKAI GWGCWC 3 cut(s) 162, 570, 1717
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 4 cut(s) 404, 599, 619, 937
BslFI GGGAC 3 cut(s) 225, 386, 1138
BslI CCNNNNNNNGG 2 cut(s) 249, 1063
BsmAI GTCTC 6 cut(s) 82, 191, 427, 473, 968, 1768
BsmFI GGGAC 3 cut(s) 225, 386, 1138
BsnI GGCC 5 cut(s) 349, 407, 1178, 1303, 1553
Bso31I GGTCTC 3 cut(s) 82, 191, 473
BsoBI CYCGRG 1 cut(s) 90
Bsp119I TTCGAA 1 cut(s) 1201
Bsp1286I GDGCHC 4 cut(s) 162, 570, 1653, 1717
Bsp143I GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
BspACI CCGC 8 cut(s) 107, 128, 206, 346, 483, 517, 547, 681
BspANI GGCC 5 cut(s) 349, 407, 1178, 1303, 1553
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 8 cut(s) 44, 171, 402, 408, 920, 1053, 1179, 1399
BspPI GGATC 2 cut(s) 610, 1599
BspT104I TTCGAA 1 cut(s) 1201
BspTNI GGTCTC 3 cut(s) 82, 191, 473
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 3 cut(s) 360, 898, 1630
BssECI CCNNGG 4 cut(s) 495, 1047, 1192, 1554
BssMI GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
BssNAI GTATAC 1 cut(s) 1137
BssT1I CCWWGG 4 cut(s) 495, 1047, 1192, 1554
Bst1107I GTATAC 1 cut(s) 1137
Bst2UI CCWGG 3 cut(s) 219, 250, 848
Bst4CI ACNGT 3 cut(s) 123, 776, 1267
Bst6I CTCTTC 3 cut(s) 289, 430, 536
BstAPI GCANNNNNTGC 1 cut(s) 1580
BstBI TTCGAA 1 cut(s) 1201
BstC8I GCNNGC 3 cut(s) 802, 1713, 1797
BstF5I GGATG 4 cut(s) 223, 281, 667, 1825
BstFNI CGCG 1 cut(s) 519
BstHHI GCGC 3 cut(s) 52, 521, 954
BstKTI GATC 8 cut(s) 18, 341, 605, 763, 901, 1027, 1116, 1594
BstMAI GTCTC 6 cut(s) 82, 191, 427, 473, 968, 1768
BstMBI GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
BstNI CCWGG 3 cut(s) 219, 250, 848
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 6 cut(s) 217, 248, 402, 598, 617, 846
BstSFI CTRYAG 2 cut(s) 1182, 1359
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 8 cut(s) 472, 726, 729, 1153, 1174, 1407, 1645, 1792
BstX2I RGATCY 1 cut(s) 602
BstXI CCANNNNNNTGG 2 cut(s) 234, 1129
BstYI RGATCY 1 cut(s) 602
BstZ17I GTATAC 1 cut(s) 1137
BsuRI GGCC 5 cut(s) 349, 407, 1178, 1303, 1553
BtrI CACGTC 2 cut(s) 13, 385
BtsCI GGATG 4 cut(s) 223, 281, 667, 1825
BtsI GCAGTG 2 cut(s) 341, 1713
BtsIMutI CAGTG 3 cut(s) 341, 781, 1713
Cac8I GCNNGC 3 cut(s) 802, 1713, 1797
CfoI GCGC 3 cut(s) 52, 521, 954
Cfr13I GGNCC 5 cut(s) 42, 400, 406, 1044, 1177
CsiI ACCWGGT 1 cut(s) 217
Csp6I GTAC 2 cut(s) 490, 1232
CviAII CATG 6 cut(s) 39, 653, 658, 704, 823, 1595
CviQI GTAC 2 cut(s) 490, 1232
DpnI GATC 8 cut(s) 17, 340, 604, 762, 900, 1026, 1115, 1593
DpnII GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
EaeI YGGCCR 1 cut(s) 1551
Eam1104I CTCTTC 3 cut(s) 289, 430, 536
EarI CTCTTC 3 cut(s) 289, 430, 536
EciI GGCGGA 1 cut(s) 562
Eco130I CCWWGG 4 cut(s) 495, 1047, 1192, 1554
Eco24I GRGCYC 1 cut(s) 1653
Eco31I GGTCTC 3 cut(s) 82, 191, 473
Eco32I GATATC 1 cut(s) 1633
Eco47I GGWCC 3 cut(s) 42, 400, 1044
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 2 cut(s) 400, 1177
EcoRI GAATTC 1 cut(s) 1203
EcoRII CCWGG 3 cut(s) 217, 248, 846
EcoRV GATATC 1 cut(s) 1633
EcoT14I CCWWGG 4 cut(s) 495, 1047, 1192, 1554
EcoT38I GRGCYC 1 cut(s) 1653
ErhI CCWWGG 4 cut(s) 495, 1047, 1192, 1554
FaeI CATG 6 cut(s) 42, 656, 661, 707, 826, 1598
FalI AAGNNNNNCTT 2 cut(s) 1663, 1695
FaqI GGGAC 3 cut(s) 225, 386, 1138
FatI CATG 6 cut(s) 38, 652, 657, 703, 822, 1594
FbaI TGATCA 2 cut(s) 760, 1024
FblI GTMKAC 1 cut(s) 1136
FokI GGATG 4 cut(s) 210, 268, 674, 1832
FriOI GRGCYC 1 cut(s) 1653
FspBI CTAG 3 cut(s) 689, 719, 1170
GlaI GCGC 3 cut(s) 51, 520, 953
GsaI CCCAGC 2 cut(s) 50, 968
GsuI CTGGAG 1 cut(s) 1647
HaeIII GGCC 5 cut(s) 349, 407, 1178, 1303, 1553
HapII CCGG 4 cut(s) 404, 599, 619, 937
HhaI GCGC 3 cut(s) 52, 521, 954
Hin1II CATG 6 cut(s) 42, 656, 661, 707, 826, 1598
Hin6I GCGC 3 cut(s) 50, 519, 952
HinP1I GCGC 3 cut(s) 50, 519, 952
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 5 cut(s) 238, 333, 376, 1151, 1514
HpaII CCGG 4 cut(s) 404, 599, 619, 937
HphI GGTGA 4 cut(s) 72, 908, 926, 1349
Hpy166II GTNNAC 3 cut(s) 6, 160, 1137
Hpy188III TCNNGA 6 cut(s) 380, 476, 971, 1375, 1473, 1589
Hpy8I GTNNAC 3 cut(s) 6, 160, 1137
HpyAV CCTTC 8 cut(s) 420, 451, 634, 932, 998, 1166, 1168, 1285
HpyCH4III ACNGT 3 cut(s) 123, 776, 1267
HpyCH4IV ACGT 2 cut(s) 12, 384
HpySE526I ACGT 2 cut(s) 12, 384
Hsp92II CATG 6 cut(s) 42, 656, 661, 707, 826, 1598
HspAI GCGC 3 cut(s) 50, 519, 952
Ksp22I TGATCA 2 cut(s) 760, 1024
Kzo9I GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
LmnI GCTCC 2 cut(s) 1057, 1786
Lsp1109I GCAGC 8 cut(s) 472, 726, 729, 1153, 1174, 1407, 1645, 1792
LweI GCATC 6 cut(s) 860, 1132, 1470, 1525, 1570, 1693
MabI ACCWGGT 1 cut(s) 217
MaeI CTAG 3 cut(s) 689, 719, 1170
MaeII ACGT 2 cut(s) 12, 384
MaeIII GTNAC 3 cut(s) 1211, 1337, 1451
MalI GATC 8 cut(s) 17, 340, 604, 762, 900, 1026, 1115, 1593
MboI GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
MboII GAAGA 6 cut(s) 306, 417, 553, 626, 923, 1151
MfeI CAATTG 1 cut(s) 1575
MflI RGATCY 1 cut(s) 602
MhlI GDGCHC 4 cut(s) 162, 570, 1653, 1717
MlsI TGGCCA 1 cut(s) 1553
MluNI TGGCCA 1 cut(s) 1553
MlyI GAGTC 5 cut(s) 247, 327, 370, 1160, 1508
MmeI TCCRAC 1 cut(s) 1110
Mox20I TGGCCA 1 cut(s) 1553
MscI TGGCCA 1 cut(s) 1553
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 2 cut(s) 1599, 1701
Msp20I TGGCCA 1 cut(s) 1553
MspA1I CMGCKG 3 cut(s) 34, 485, 800
MspI CCGG 4 cut(s) 404, 599, 619, 937
MspR9I CCNGG 6 cut(s) 219, 250, 404, 600, 619, 848
MunI CAATTG 1 cut(s) 1575
MvaI CCWGG 3 cut(s) 219, 250, 848
MvnI CGCG 1 cut(s) 519
NciI CCSGG 3 cut(s) 404, 600, 619
NdeII GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
NlaIII CATG 6 cut(s) 42, 656, 661, 707, 826, 1598
NlaIV GGNNCC 8 cut(s) 44, 171, 402, 408, 920, 1053, 1179, 1399
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 1337
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 1201
PaeR7I CTCGAG 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 219
PleI GAGTC 5 cut(s) 246, 327, 370, 1159, 1508
PpsI GAGTC 5 cut(s) 246, 327, 370, 1159, 1508
PpuMI RGGWCCY 1 cut(s) 400
PsiI TTATAA 1 cut(s) 1436
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 3 cut(s) 217, 248, 846
PspFI CCCAGC 2 cut(s) 46, 964
PspGI CCWGG 3 cut(s) 217, 248, 846
PspN4I GGNNCC 8 cut(s) 44, 171, 402, 408, 920, 1053, 1179, 1399
PspPI GGNCC 5 cut(s) 42, 400, 406, 1044, 1177
PspPPI RGGWCCY 1 cut(s) 400
PspXI VCTCGAGB 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PsuI RGATCY 1 cut(s) 602
PsyI GACNNNGTC 1 cut(s) 219
PvuII CAGCTG 2 cut(s) 34, 800
RsaI GTAC 2 cut(s) 491, 1233
RsaNI GTAC 2 cut(s) 490, 1232
RseI CAYNNNNRTG 2 cut(s) 1599, 1701
SaqAI TTAA 1 cut(s) 927
Sau3AI GATC 8 cut(s) 15, 338, 602, 760, 898, 1024, 1113, 1591
Sau96I GGNCC 5 cut(s) 42, 400, 406, 1044, 1177
SchI GAGTC 5 cut(s) 247, 327, 370, 1160, 1508
ScrFI CCNGG 6 cut(s) 219, 250, 404, 600, 619, 848
SduI GDGCHC 4 cut(s) 162, 570, 1653, 1717
SexAI ACCWGGT 1 cut(s) 217
SfaNI GCATC 6 cut(s) 860, 1132, 1470, 1525, 1570, 1693
SfcI CTRYAG 2 cut(s) 1182, 1359
Sfr274I CTCGAG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 1201
SinI GGWCC 3 cut(s) 42, 400, 1044
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 1599, 1701
SmlI CTYRAG 3 cut(s) 90, 378, 476
SmoI CTYRAG 3 cut(s) 90, 378, 476
SsiI CCGC 8 cut(s) 107, 128, 206, 346, 483, 517, 547, 681
SspMI CTAG 3 cut(s) 689, 719, 1170
StyD4I CCNGG 6 cut(s) 217, 248, 402, 598, 617, 846
StyI CCWWGG 4 cut(s) 495, 1047, 1192, 1554
TaaI ACNGT 3 cut(s) 123, 776, 1267
TaiI ACGT 2 cut(s) 15, 387
TaqI TCGA 7 cut(s) 91, 191, 331, 811, 1201, 1376, 1474
TauI GCSGC 2 cut(s) 130, 349
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 3 cut(s) 348, 781, 1713
TseFI GTSAC 1 cut(s) 1337
TseI GCWGC 8 cut(s) 485, 739, 742, 1166, 1187, 1420, 1658, 1780
Tsp45I GTSAC 1 cut(s) 1337
TspDTI ATGAA 3 cut(s) 407, 839, 900
TspGWI ACGGA 4 cut(s) 23, 145, 182, 1410
TspRI CASTG 3 cut(s) 348, 781, 1713
Tth111I GACNNNGTC 1 cut(s) 219
VneI GTGCAC 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 42, 400, 1044
XapI RAATTY 5 cut(s) 355, 1203, 1476, 1732, 1829
XceI RCATGY 1 cut(s) 707
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 1136
XspI CTAG 3 cut(s) 689, 719, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.