26S proteasome non-ATPase regulatory subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20200 AT1G75990 |
| fragaria_vesca | FvH4_2g15510 FvH4_2g15510 |
| malus_domestica | MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1 |
| prunus_persica | Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1 |
| pyrus_communis | pycom05g11770 pycom06g20010 pycom10g10860 |
| rosa_chinensis | RchiOBHm_Chr6g0278511 |
| rosa_laevigata | RLG00000007962 RLG00000013222 |
| rosa_multiflora | Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320 |
| rosa_rugosa | Rorug06G0117600 |
| rosa_samantha | Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300 |
| rosa_wichuraiana | Rw0G003080 Rw4G016480 Rw6G019790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1436 |
| AccI | GTMKAC | 1 cut(s) | 1136 |
| AccII | CGCG | 1 cut(s) | 519 |
| AciI | CCGC | 8 cut(s) | 107, 128, 206, 346, 483, 517, 547, 681 |
| AclWI | GGATC | 2 cut(s) | 610, 1599 |
| AcoI | YGGCCR | 1 cut(s) | 1551 |
| AcsI | RAATTY | 5 cut(s) | 355, 1203, 1476, 1732, 1829 |
| AfaI | GTAC | 2 cut(s) | 491, 1233 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 249, 1063 |
| AgsI | TTSAA | 4 cut(s) | 457, 1163, 1208, 1313 |
| AjiI | CACGTC | 2 cut(s) | 13, 385 |
| AjnI | CCWGG | 3 cut(s) | 217, 248, 846 |
| Alw21I | GWGCWC | 3 cut(s) | 162, 570, 1717 |
| Alw26I | GTCTC | 6 cut(s) | 82, 191, 427, 473, 968, 1768 |
| Alw44I | GTGCAC | 1 cut(s) | 158 |
| AlwI | GGATC | 2 cut(s) | 610, 1599 |
| Ama87I | CYCGRG | 1 cut(s) | 90 |
| AoxI | GGCC | 5 cut(s) | 347, 405, 1176, 1301, 1551 |
| ApaLI | GTGCAC | 1 cut(s) | 158 |
| ApeKI | GCWGC | 8 cut(s) | 485, 739, 742, 1166, 1187, 1420, 1658, 1780 |
| ApoI | RAATTY | 5 cut(s) | 355, 1203, 1476, 1732, 1829 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 205, 237 |
| AspLEI | GCGC | 3 cut(s) | 52, 521, 954 |
| AspS9I | GGNCC | 5 cut(s) | 42, 400, 406, 1044, 1177 |
| AsuC2I | CCSGG | 3 cut(s) | 404, 600, 619 |
| AsuHPI | GGTGA | 4 cut(s) | 72, 908, 926, 1349 |
| AsuII | TTCGAA | 1 cut(s) | 1201 |
| AvaI | CYCGRG | 1 cut(s) | 90 |
| AvaII | GGWCC | 3 cut(s) | 42, 400, 1044 |
| BaeGI | GKGCMC | 1 cut(s) | 162 |
| BalI | TGGCCA | 1 cut(s) | 1553 |
| BanII | GRGCYC | 1 cut(s) | 1653 |
| Bbv12I | GWGCWC | 3 cut(s) | 162, 570, 1717 |
| BbvCI | CCTCAGC | 1 cut(s) | 1812 |
| BbvI | GCAGC | 8 cut(s) | 472, 726, 729, 1153, 1174, 1407, 1645, 1792 |
| BccI | CCATC | 4 cut(s) | 148, 289, 529, 1562 |
| BceAI | ACGGC | 2 cut(s) | 506, 939 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1070, 1104 |
| BciT130I | CCWGG | 3 cut(s) | 219, 250, 848 |
| BclI | TGATCA | 2 cut(s) | 760, 1024 |
| BcnI | CCSGG | 3 cut(s) | 404, 600, 619 |
| BcoDI | GTCTC | 6 cut(s) | 82, 191, 427, 473, 968, 1768 |
| BfaI | CTAG | 3 cut(s) | 689, 719, 1170 |
| BfmI | CTRYAG | 2 cut(s) | 1182, 1359 |
| Bme1390I | CCNGG | 6 cut(s) | 219, 250, 404, 600, 619, 848 |
| Bme18I | GGWCC | 3 cut(s) | 42, 400, 1044 |
| BmeT110I | CYCGRG | 1 cut(s) | 90 |
| BmgBI | CACGTC | 2 cut(s) | 13, 385 |
| BmgT120I | GGNCC | 5 cut(s) | 42, 400, 406, 1044, 1177 |
| BmiI | GGNNCC | 8 cut(s) | 44, 171, 402, 408, 920, 1053, 1179, 1399 |
| BmrFI | CCNGG | 6 cut(s) | 219, 250, 404, 600, 619, 848 |
| BmsI | GCATC | 6 cut(s) | 860, 1132, 1470, 1525, 1570, 1693 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1055, 1087 |
| BpmI | CTGGAG | 1 cut(s) | 1647 |
| Bpu10I | CCTNAGC | 2 cut(s) | 714, 1812 |
| Bpu14I | TTCGAA | 1 cut(s) | 1201 |
| BpuEI | CTTGAG | 2 cut(s) | 363, 497 |
| BpuMI | CCSGG | 3 cut(s) | 404, 600, 619 |
| BsaI | GGTCTC | 3 cut(s) | 82, 191, 473 |
| BsaJI | CCNNGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| BsaWI | WCCGGW | 1 cut(s) | 936 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 249, 1063 |
| Bse1I | ACTGG | 3 cut(s) | 360, 898, 1630 |
| Bse3DI | GCAATG | 1 cut(s) | 804 |
| BseBI | CCWGG | 3 cut(s) | 219, 250, 848 |
| BseDI | CCNNGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| BseGI | GGATG | 4 cut(s) | 223, 281, 667, 1825 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 249, 1063 |
| BseMI | GCAATG | 1 cut(s) | 804 |
| BseNI | ACTGG | 3 cut(s) | 360, 898, 1630 |
| BseRI | GAGGAG | 3 cut(s) | 312, 328, 1829 |
| BseSI | GKGCMC | 1 cut(s) | 162 |
| BseXI | GCAGC | 8 cut(s) | 472, 726, 729, 1153, 1174, 1407, 1645, 1792 |
| BseYI | CCCAGC | 2 cut(s) | 46, 964 |
| Bsh1236I | CGCG | 1 cut(s) | 519 |
| BshFI | GGCC | 5 cut(s) | 349, 407, 1178, 1303, 1553 |
| BsiHKAI | GWGCWC | 3 cut(s) | 162, 570, 1717 |
| BsiHKCI | CYCGRG | 1 cut(s) | 90 |
| BsiSI | CCGG | 4 cut(s) | 404, 599, 619, 937 |
| BslFI | GGGAC | 3 cut(s) | 225, 386, 1138 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 249, 1063 |
| BsmAI | GTCTC | 6 cut(s) | 82, 191, 427, 473, 968, 1768 |
| BsmFI | GGGAC | 3 cut(s) | 225, 386, 1138 |
| BsnI | GGCC | 5 cut(s) | 349, 407, 1178, 1303, 1553 |
| Bso31I | GGTCTC | 3 cut(s) | 82, 191, 473 |
| BsoBI | CYCGRG | 1 cut(s) | 90 |
| Bsp119I | TTCGAA | 1 cut(s) | 1201 |
| Bsp1286I | GDGCHC | 4 cut(s) | 162, 570, 1653, 1717 |
| Bsp143I | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| BspACI | CCGC | 8 cut(s) | 107, 128, 206, 346, 483, 517, 547, 681 |
| BspANI | GGCC | 5 cut(s) | 349, 407, 1178, 1303, 1553 |
| BspFNI | CGCG | 1 cut(s) | 519 |
| BspLI | GGNNCC | 8 cut(s) | 44, 171, 402, 408, 920, 1053, 1179, 1399 |
| BspPI | GGATC | 2 cut(s) | 610, 1599 |
| BspT104I | TTCGAA | 1 cut(s) | 1201 |
| BspTNI | GGTCTC | 3 cut(s) | 82, 191, 473 |
| BsrDI | GCAATG | 1 cut(s) | 804 |
| BsrI | ACTGG | 3 cut(s) | 360, 898, 1630 |
| BssECI | CCNNGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| BssMI | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| BssNAI | GTATAC | 1 cut(s) | 1137 |
| BssT1I | CCWWGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| Bst1107I | GTATAC | 1 cut(s) | 1137 |
| Bst2UI | CCWGG | 3 cut(s) | 219, 250, 848 |
| Bst4CI | ACNGT | 3 cut(s) | 123, 776, 1267 |
| Bst6I | CTCTTC | 3 cut(s) | 289, 430, 536 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1580 |
| BstBI | TTCGAA | 1 cut(s) | 1201 |
| BstC8I | GCNNGC | 3 cut(s) | 802, 1713, 1797 |
| BstF5I | GGATG | 4 cut(s) | 223, 281, 667, 1825 |
| BstFNI | CGCG | 1 cut(s) | 519 |
| BstHHI | GCGC | 3 cut(s) | 52, 521, 954 |
| BstKTI | GATC | 8 cut(s) | 18, 341, 605, 763, 901, 1027, 1116, 1594 |
| BstMAI | GTCTC | 6 cut(s) | 82, 191, 427, 473, 968, 1768 |
| BstMBI | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| BstNI | CCWGG | 3 cut(s) | 219, 250, 848 |
| BstNSI | RCATGY | 1 cut(s) | 707 |
| BstSCI | CCNGG | 6 cut(s) | 217, 248, 402, 598, 617, 846 |
| BstSFI | CTRYAG | 2 cut(s) | 1182, 1359 |
| BstSLI | GKGCMC | 1 cut(s) | 162 |
| BstUI | CGCG | 1 cut(s) | 519 |
| BstV1I | GCAGC | 8 cut(s) | 472, 726, 729, 1153, 1174, 1407, 1645, 1792 |
| BstX2I | RGATCY | 1 cut(s) | 602 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 234, 1129 |
| BstYI | RGATCY | 1 cut(s) | 602 |
| BstZ17I | GTATAC | 1 cut(s) | 1137 |
| BsuRI | GGCC | 5 cut(s) | 349, 407, 1178, 1303, 1553 |
| BtrI | CACGTC | 2 cut(s) | 13, 385 |
| BtsCI | GGATG | 4 cut(s) | 223, 281, 667, 1825 |
| BtsI | GCAGTG | 2 cut(s) | 341, 1713 |
| BtsIMutI | CAGTG | 3 cut(s) | 341, 781, 1713 |
| Cac8I | GCNNGC | 3 cut(s) | 802, 1713, 1797 |
| CfoI | GCGC | 3 cut(s) | 52, 521, 954 |
| Cfr13I | GGNCC | 5 cut(s) | 42, 400, 406, 1044, 1177 |
| CsiI | ACCWGGT | 1 cut(s) | 217 |
| Csp6I | GTAC | 2 cut(s) | 490, 1232 |
| CviAII | CATG | 6 cut(s) | 39, 653, 658, 704, 823, 1595 |
| CviQI | GTAC | 2 cut(s) | 490, 1232 |
| DpnI | GATC | 8 cut(s) | 17, 340, 604, 762, 900, 1026, 1115, 1593 |
| DpnII | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| EaeI | YGGCCR | 1 cut(s) | 1551 |
| Eam1104I | CTCTTC | 3 cut(s) | 289, 430, 536 |
| EarI | CTCTTC | 3 cut(s) | 289, 430, 536 |
| EciI | GGCGGA | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| Eco24I | GRGCYC | 1 cut(s) | 1653 |
| Eco31I | GGTCTC | 3 cut(s) | 82, 191, 473 |
| Eco32I | GATATC | 1 cut(s) | 1633 |
| Eco47I | GGWCC | 3 cut(s) | 42, 400, 1044 |
| Eco88I | CYCGRG | 1 cut(s) | 90 |
| EcoO109I | RGGNCCY | 2 cut(s) | 400, 1177 |
| EcoRI | GAATTC | 1 cut(s) | 1203 |
| EcoRII | CCWGG | 3 cut(s) | 217, 248, 846 |
| EcoRV | GATATC | 1 cut(s) | 1633 |
| EcoT14I | CCWWGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| EcoT38I | GRGCYC | 1 cut(s) | 1653 |
| ErhI | CCWWGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| FaeI | CATG | 6 cut(s) | 42, 656, 661, 707, 826, 1598 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1663, 1695 |
| FaqI | GGGAC | 3 cut(s) | 225, 386, 1138 |
| FatI | CATG | 6 cut(s) | 38, 652, 657, 703, 822, 1594 |
| FbaI | TGATCA | 2 cut(s) | 760, 1024 |
| FblI | GTMKAC | 1 cut(s) | 1136 |
| FokI | GGATG | 4 cut(s) | 210, 268, 674, 1832 |
| FriOI | GRGCYC | 1 cut(s) | 1653 |
| FspBI | CTAG | 3 cut(s) | 689, 719, 1170 |
| GlaI | GCGC | 3 cut(s) | 51, 520, 953 |
| GsaI | CCCAGC | 2 cut(s) | 50, 968 |
| GsuI | CTGGAG | 1 cut(s) | 1647 |
| HaeIII | GGCC | 5 cut(s) | 349, 407, 1178, 1303, 1553 |
| HapII | CCGG | 4 cut(s) | 404, 599, 619, 937 |
| HhaI | GCGC | 3 cut(s) | 52, 521, 954 |
| Hin1II | CATG | 6 cut(s) | 42, 656, 661, 707, 826, 1598 |
| Hin6I | GCGC | 3 cut(s) | 50, 519, 952 |
| HinP1I | GCGC | 3 cut(s) | 50, 519, 952 |
| HindIII | AAGCTT | 1 cut(s) | 786 |
| HinfI | GANTC | 5 cut(s) | 238, 333, 376, 1151, 1514 |
| HpaII | CCGG | 4 cut(s) | 404, 599, 619, 937 |
| HphI | GGTGA | 4 cut(s) | 72, 908, 926, 1349 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 160, 1137 |
| Hpy188III | TCNNGA | 6 cut(s) | 380, 476, 971, 1375, 1473, 1589 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 160, 1137 |
| HpyAV | CCTTC | 8 cut(s) | 420, 451, 634, 932, 998, 1166, 1168, 1285 |
| HpyCH4III | ACNGT | 3 cut(s) | 123, 776, 1267 |
| HpyCH4IV | ACGT | 2 cut(s) | 12, 384 |
| HpySE526I | ACGT | 2 cut(s) | 12, 384 |
| Hsp92II | CATG | 6 cut(s) | 42, 656, 661, 707, 826, 1598 |
| HspAI | GCGC | 3 cut(s) | 50, 519, 952 |
| Ksp22I | TGATCA | 2 cut(s) | 760, 1024 |
| Kzo9I | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| LmnI | GCTCC | 2 cut(s) | 1057, 1786 |
| Lsp1109I | GCAGC | 8 cut(s) | 472, 726, 729, 1153, 1174, 1407, 1645, 1792 |
| LweI | GCATC | 6 cut(s) | 860, 1132, 1470, 1525, 1570, 1693 |
| MabI | ACCWGGT | 1 cut(s) | 217 |
| MaeI | CTAG | 3 cut(s) | 689, 719, 1170 |
| MaeII | ACGT | 2 cut(s) | 12, 384 |
| MaeIII | GTNAC | 3 cut(s) | 1211, 1337, 1451 |
| MalI | GATC | 8 cut(s) | 17, 340, 604, 762, 900, 1026, 1115, 1593 |
| MboI | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| MboII | GAAGA | 6 cut(s) | 306, 417, 553, 626, 923, 1151 |
| MfeI | CAATTG | 1 cut(s) | 1575 |
| MflI | RGATCY | 1 cut(s) | 602 |
| MhlI | GDGCHC | 4 cut(s) | 162, 570, 1653, 1717 |
| MlsI | TGGCCA | 1 cut(s) | 1553 |
| MluNI | TGGCCA | 1 cut(s) | 1553 |
| MlyI | GAGTC | 5 cut(s) | 247, 327, 370, 1160, 1508 |
| MmeI | TCCRAC | 1 cut(s) | 1110 |
| Mox20I | TGGCCA | 1 cut(s) | 1553 |
| MscI | TGGCCA | 1 cut(s) | 1553 |
| MseI | TTAA | 1 cut(s) | 927 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1599, 1701 |
| Msp20I | TGGCCA | 1 cut(s) | 1553 |
| MspA1I | CMGCKG | 3 cut(s) | 34, 485, 800 |
| MspI | CCGG | 4 cut(s) | 404, 599, 619, 937 |
| MspR9I | CCNGG | 6 cut(s) | 219, 250, 404, 600, 619, 848 |
| MunI | CAATTG | 1 cut(s) | 1575 |
| MvaI | CCWGG | 3 cut(s) | 219, 250, 848 |
| MvnI | CGCG | 1 cut(s) | 519 |
| NciI | CCSGG | 3 cut(s) | 404, 600, 619 |
| NdeII | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| NlaIII | CATG | 6 cut(s) | 42, 656, 661, 707, 826, 1598 |
| NlaIV | GGNNCC | 8 cut(s) | 44, 171, 402, 408, 920, 1053, 1179, 1399 |
| NmeAIII | GCCGAG | 1 cut(s) | 551 |
| NmuCI | GTSAC | 1 cut(s) | 1337 |
| NspI | RCATGY | 1 cut(s) | 707 |
| NspV | TTCGAA | 1 cut(s) | 1201 |
| PaeR7I | CTCGAG | 1 cut(s) | 90 |
| PflFI | GACNNNGTC | 1 cut(s) | 219 |
| PleI | GAGTC | 5 cut(s) | 246, 327, 370, 1159, 1508 |
| PpsI | GAGTC | 5 cut(s) | 246, 327, 370, 1159, 1508 |
| PpuMI | RGGWCCY | 1 cut(s) | 400 |
| PsiI | TTATAA | 1 cut(s) | 1436 |
| Psp5II | RGGWCCY | 1 cut(s) | 400 |
| Psp6I | CCWGG | 3 cut(s) | 217, 248, 846 |
| PspFI | CCCAGC | 2 cut(s) | 46, 964 |
| PspGI | CCWGG | 3 cut(s) | 217, 248, 846 |
| PspN4I | GGNNCC | 8 cut(s) | 44, 171, 402, 408, 920, 1053, 1179, 1399 |
| PspPI | GGNCC | 5 cut(s) | 42, 400, 406, 1044, 1177 |
| PspPPI | RGGWCCY | 1 cut(s) | 400 |
| PspXI | VCTCGAGB | 1 cut(s) | 90 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 162, 194 |
| PsuI | RGATCY | 1 cut(s) | 602 |
| PsyI | GACNNNGTC | 1 cut(s) | 219 |
| PvuII | CAGCTG | 2 cut(s) | 34, 800 |
| RsaI | GTAC | 2 cut(s) | 491, 1233 |
| RsaNI | GTAC | 2 cut(s) | 490, 1232 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1599, 1701 |
| SaqAI | TTAA | 1 cut(s) | 927 |
| Sau3AI | GATC | 8 cut(s) | 15, 338, 602, 760, 898, 1024, 1113, 1591 |
| Sau96I | GGNCC | 5 cut(s) | 42, 400, 406, 1044, 1177 |
| SchI | GAGTC | 5 cut(s) | 247, 327, 370, 1160, 1508 |
| ScrFI | CCNGG | 6 cut(s) | 219, 250, 404, 600, 619, 848 |
| SduI | GDGCHC | 4 cut(s) | 162, 570, 1653, 1717 |
| SexAI | ACCWGGT | 1 cut(s) | 217 |
| SfaNI | GCATC | 6 cut(s) | 860, 1132, 1470, 1525, 1570, 1693 |
| SfcI | CTRYAG | 2 cut(s) | 1182, 1359 |
| Sfr274I | CTCGAG | 1 cut(s) | 90 |
| SfuI | TTCGAA | 1 cut(s) | 1201 |
| SinI | GGWCC | 3 cut(s) | 42, 400, 1044 |
| SlaI | CTCGAG | 1 cut(s) | 90 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1599, 1701 |
| SmlI | CTYRAG | 3 cut(s) | 90, 378, 476 |
| SmoI | CTYRAG | 3 cut(s) | 90, 378, 476 |
| SsiI | CCGC | 8 cut(s) | 107, 128, 206, 346, 483, 517, 547, 681 |
| SspMI | CTAG | 3 cut(s) | 689, 719, 1170 |
| StyD4I | CCNGG | 6 cut(s) | 217, 248, 402, 598, 617, 846 |
| StyI | CCWWGG | 4 cut(s) | 495, 1047, 1192, 1554 |
| TaaI | ACNGT | 3 cut(s) | 123, 776, 1267 |
| TaiI | ACGT | 2 cut(s) | 15, 387 |
| TaqI | TCGA | 7 cut(s) | 91, 191, 331, 811, 1201, 1376, 1474 |
| TauI | GCSGC | 2 cut(s) | 130, 349 |
| Tru1I | TTAA | 1 cut(s) | 927 |
| Tru9I | TTAA | 1 cut(s) | 927 |
| TscAI | CASTG | 3 cut(s) | 348, 781, 1713 |
| TseFI | GTSAC | 1 cut(s) | 1337 |
| TseI | GCWGC | 8 cut(s) | 485, 739, 742, 1166, 1187, 1420, 1658, 1780 |
| Tsp45I | GTSAC | 1 cut(s) | 1337 |
| TspDTI | ATGAA | 3 cut(s) | 407, 839, 900 |
| TspGWI | ACGGA | 4 cut(s) | 23, 145, 182, 1410 |
| TspRI | CASTG | 3 cut(s) | 348, 781, 1713 |
| Tth111I | GACNNNGTC | 1 cut(s) | 219 |
| VneI | GTGCAC | 1 cut(s) | 158 |
| VpaK11BI | GGWCC | 3 cut(s) | 42, 400, 1044 |
| XapI | RAATTY | 5 cut(s) | 355, 1203, 1476, 1732, 1829 |
| XceI | RCATGY | 1 cut(s) | 707 |
| XhoI | CTCGAG | 1 cut(s) | 90 |
| XmiI | GTMKAC | 1 cut(s) | 1136 |
| XspI | CTAG | 3 cut(s) | 689, 719, 1170 |