Rh4DG179200

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002752
Physical Location & Seq
Reverse (-)
35652459 .. 35670438
17980 bp
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UTR
Exon/CDS
Intron
Rh4DG179200.1

Sequence Viewer

Length: 183 bp
ATGGACGACGATGAGCATGACATGGATATTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAAAATACAGTGAGGCTCCAGGATGGAAAGATGTGCAGCCTCATGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
PCI Rpn3_C

Protein Analysis

60

Amino Acids

6.9

Weight (kDa)

4.39

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_PSMD3_N PF25573 7 - 49 6.9e-08 PSMD3-like, N-terminal TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 170
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 124
BfaI CTAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 124, 175
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 170
BssMI GATC 2 cut(s) 124, 175
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 2 cut(s) 127, 178
BstMBI GATC 2 cut(s) 124, 175
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 145
CciI TCATGA 1 cut(s) 172
CviAII CATG 4 cut(s) 17, 22, 68, 173
CviJI RGCY 3 cut(s) 82, 146, 169
CviKI_1 RGCY 3 cut(s) 82, 146, 169
DdeI CTNAG 1 cut(s) 78
DpnI GATC 2 cut(s) 126, 177
DpnII GATC 2 cut(s) 124, 175
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 20, 25, 71, 176
FaiI YATR 4 cut(s) 18, 23, 69, 174
FatI CATG 4 cut(s) 16, 21, 67, 172
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 83
GluI GCNGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 132
Hin1II CATG 4 cut(s) 20, 25, 71, 176
Hpy188I TCNGA 2 cut(s) 120, 129
Hpy188III TCNNGA 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 38, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 4 cut(s) 20, 25, 71, 176
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 124, 175
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 89, 90, 135, 162
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 1 cut(s) 83
MalI GATC 2 cut(s) 126, 177
MboI GATC 2 cut(s) 124, 175
MnlI CCTC 3 cut(s) 82, 136, 180
MseI TTAA 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 2 cut(s) 124, 175
NlaIII CATG 4 cut(s) 20, 25, 71, 176
NlaIV GGNNCC 1 cut(s) 147
NspI RCATGY 1 cut(s) 71
PagI TCATGA 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 124, 175
ScrFI CCNGG 1 cut(s) 150
SetI ASST 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 140
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 166
TspRI CASTG 1 cut(s) 145
XceI RCATGY 1 cut(s) 71
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.