Prupe.1G360600_v2.0.a1

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
33247715 .. 33251263
3549 bp
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UTR
Exon/CDS
Intron
Prupe.1G360600.2

Sequence Viewer

Length: 1473 bp
ATGACTCAGGACGTGGAGATGAAAGATGAGGAAGCTCTTCCTCAAGCCCCTCTACCTTCCGATTCAGCATCCATTTTGCAGCATTTGAAGGAGGGGGCATCGTTTATTGAGGCCGCTTCCTACACCAAAGAGGTTCGCAGAATAGCTCGTGCTGTTCGCCTTACGATTCAGCTGAGGCGCAAGCTCACGGCCCCCTTGCTCTCTGCATTTCTCGATTACGCTCTTCTTCCTGGTTCCGAAGCTCACGCACGATTGTCTGCCTACCTTCCTAAGGACGATAGGCATGGCATGGAAGTTGATAATGATGATGCCGCAACTTCTGCTGTTCAAGCTCCGGCAAAGCACATATTGCCTGAGCTTGAGATCTACTGTTACTTGCTTGTGATACTTTTTCTGATTGATCAGAAAAGATACGATGAGGCTAAAGCCTGTTCCTCGGCTAGTATTGCTCGACTTAAGAATTTCAATAGAAGAACCGTTGATGTTCTAGCATCCAGATTGTACTTCTATTACTCATATAGCTATGAGCTTACTGGAAGTCTTGCCGAAATTCGAGGCAATCTCCTTGCCTTGCATCGCGTTGCCACATTGCGTCATGATGAGTTGGGTCAGGAAACACTTCTCAACCTGTTACTTCGAAATTATCTCCATTACAACCTATACGACCAGGCGGAGAAGCTAAGGTCCAAGGCACCGCGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTTGGAAAGATTCGGACAATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCTTGCAGGCTGCTAGGAAAGCCCCTTTTGCAGCTCAAGGTTTCCGAATTCAATGTAACAAATGGGCTGTCTTGGTCCGTTTGCTTCTTGGTGAAATACCAGAGAGGATCATCTTTATGCAGAGAGGAATGGAAAAAGCTTTGAGGCCTTACTTTGAACTAACAAATGCTGTTCGGATTGGTGATTTAGCACTATTCAGAAATGTTGCAGAAAAGTTTGCTGCCACATTCAGCAAGGACCAAACCCACAATTTAATTGTTCGGTTGCGACATAATGTCATCAGGACTGGATTACGGAATATTAGCATCTCTTATTCCCGCATCTCGCTTGCTGATGTTGCTGAGAAGTTAAGATTGATTTCTACAAACCCTATTGCCGATGCTGAAAGCATCGTGGCCAAGGCTATCCGTGATGGCGCCATTGAGGCCTCATTGGATCATTCAAATGGGTGGATGGTATCAAAGGAGACCGGAGATATTTACTCTACTAATGAGCCTCAAGCTGCTTTCAACTCCAGGATTGCCTTTTGTCTTAACATGCACAATGAAGCAGTTCGGGCCTTACGGTTTCCTCCAAATCCACACAAGGAGAAAGAAAGCGCTGAGAGGAGAGAGCGGCAGCAACAAGAGCAAGAGCTTGCCAACCATATTACAGAGGATGACGACGATGATTTTTAA

Protein Analysis

491

Amino Acids

55.92

Weight (kDa)

7.7

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 691, 1211
AccBSI CCGCTC 1 cut(s) 1411
AccI GTMKAC 1 cut(s) 776
AccII CGCG 2 cut(s) 579, 697
AciI CCGC 6 cut(s) 114, 312, 671, 695, 1114, 1411
AclWI GGATC 2 cut(s) 911, 1239
AcoI YGGCCR 1 cut(s) 1191
AcsI RAATTY 3 cut(s) 460, 549, 843
AcyI GRCGYC 1 cut(s) 1212
AfaI GTAC 1 cut(s) 503
AfeI AGCGCT 1 cut(s) 1396
AfiI CCNNNNNNNGG 1 cut(s) 271
AflII CTTAAG 1 cut(s) 455
AhdI GACNNNNNGTC 1 cut(s) 1070
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 3 cut(s) 229, 666, 1310
Alw26I GTCTC 2 cut(s) 798, 1256
AlwI GGATC 2 cut(s) 911, 1239
Aor51HI AGCGCT 1 cut(s) 1396
AoxI GGCC 6 cut(s) 111, 189, 941, 1191, 1221, 1353
ApeKI GCWGC 6 cut(s) 79, 806, 827, 1016, 1298, 1414
ApoI RAATTY 3 cut(s) 460, 549, 843
ArsI GACNNNNNNTTYG 2 cut(s) 849, 881
Asp700I GAANNNNTTC 3 cut(s) 36, 618, 1347
AspLEI GCGC 3 cut(s) 180, 1214, 1397
AspS9I GGNCC 5 cut(s) 190, 684, 871, 1033, 1353
AsuHPI GGTGA 2 cut(s) 899, 989
AsuII TTCGAA 1 cut(s) 637
AvaII GGWCC 3 cut(s) 684, 871, 1033
AxyI CCTNAGG 1 cut(s) 270
BalI TGGCCA 1 cut(s) 1193
BanI GGYRCC 2 cut(s) 691, 1211
BauI CACGAG 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 6 cut(s) 91, 793, 839, 1003, 1285, 1426
BccI CCATC 2 cut(s) 1202, 1243
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 3 cut(s) 231, 668, 1312
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 798, 1256
BfaI CTAG 3 cut(s) 441, 488, 810
BfoI RGCGCY 2 cut(s) 1215, 1398
BfrI CTTAAG 1 cut(s) 455
BglI GCCNNNNNGGC 1 cut(s) 1220
BglII AGATCT 1 cut(s) 363
BisI GCNGC 9 cut(s) 80, 114, 312, 807, 828, 1017, 1299, 1412, 1415
BlsI GCNGC 9 cut(s) 81, 115, 313, 808, 829, 1018, 1300, 1413, 1416
Bme1390I CCNGG 3 cut(s) 231, 668, 1312
Bme18I GGWCC 3 cut(s) 684, 871, 1033
BmeRI GACNNNNNGTC 1 cut(s) 1070
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 5 cut(s) 190, 684, 871, 1033, 1353
BmiI GGNNCC 4 cut(s) 192, 235, 693, 1213
BmrFI CCNGG 3 cut(s) 231, 668, 1312
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpmI CTGGAG 1 cut(s) 1294
Bpu10I CCTNAGC 3 cut(s) 173, 354, 680
Bpu14I TTCGAA 1 cut(s) 637
BpuEI CTTGAG 4 cut(s) 27, 380, 816, 1278
BsaHI GRCGYC 1 cut(s) 1212
BsaI GGTCTC 1 cut(s) 1256
BsaJI CCNNGG 4 cut(s) 435, 687, 745, 1194
BsaWI WCCGGW 1 cut(s) 1265
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 538, 1087
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 587
BseBI CCWGG 3 cut(s) 231, 668, 1312
BseDI CCNNGG 4 cut(s) 435, 687, 745, 1194
BseGI GGATG 4 cut(s) 68, 491, 1254, 1459
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 5 cut(s) 20, 164, 345, 1128, 1389
BseNI ACTGG 2 cut(s) 538, 1087
BseRI GAGGAG 1 cut(s) 1417
BseXI GCAGC 6 cut(s) 91, 793, 839, 1003, 1285, 1426
Bsh1236I CGCG 2 cut(s) 579, 697
BshFI GGCC 6 cut(s) 113, 191, 943, 1193, 1223, 1355
BshNI GGYRCC 2 cut(s) 691, 1211
BsiSI CCGG 2 cut(s) 335, 1266
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 798, 1256
BsnI GGCC 6 cut(s) 113, 191, 943, 1193, 1223, 1355
Bso31I GGTCTC 1 cut(s) 1256
Bsp119I TTCGAA 1 cut(s) 637
Bsp143I GATC 4 cut(s) 363, 400, 903, 1231
BspACI CCGC 6 cut(s) 114, 312, 671, 695, 1114, 1411
BspANI GGCC 6 cut(s) 113, 191, 943, 1193, 1223, 1355
BspCNI CTCAG 5 cut(s) 19, 165, 346, 1129, 1390
BspFNI CGCG 2 cut(s) 579, 697
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 4 cut(s) 192, 235, 693, 1213
BspPI GGATC 2 cut(s) 911, 1239
BspQI GCTCTTC 2 cut(s) 42, 228
BspT104I TTCGAA 1 cut(s) 637
BspT107I GGYRCC 2 cut(s) 691, 1211
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 1256
BsrBI CCGCTC 1 cut(s) 1411
BsrDI GCAATG 1 cut(s) 587
BsrI ACTGG 2 cut(s) 538, 1087
BssECI CCNNGG 4 cut(s) 435, 687, 745, 1194
BssMI GATC 4 cut(s) 363, 400, 903, 1231
BssNAI GTATAC 1 cut(s) 777
BssNI GRCGYC 1 cut(s) 1212
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 687, 745, 1194
Bst1107I GTATAC 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 231, 668, 1312
Bst4CI ACNGT 3 cut(s) 371, 478, 1362
Bst6I CTCTTC 3 cut(s) 42, 228, 743
BstACI GRCGYC 1 cut(s) 1212
BstAFI CTTAAG 1 cut(s) 455
BstAPI GCANNNNNTGC 2 cut(s) 320, 349
BstBI TTCGAA 1 cut(s) 637
BstC8I GCNNGC 4 cut(s) 182, 804, 1125, 1434
BstDEI CTNAG 7 cut(s) 6, 173, 270, 354, 680, 1137, 1398
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 4 cut(s) 68, 491, 1254, 1459
BstFNI CGCG 2 cut(s) 579, 697
BstH2I RGCGCY 2 cut(s) 1215, 1398
BstHHI GCGC 3 cut(s) 180, 1214, 1397
BstKTI GATC 4 cut(s) 366, 403, 906, 1234
BstMAI GTCTC 2 cut(s) 798, 1256
BstMBI GATC 4 cut(s) 363, 400, 903, 1231
BstNI CCWGG 3 cut(s) 231, 668, 1312
BstNSI RCATGY 1 cut(s) 1336
BstSCI CCNGG 3 cut(s) 229, 666, 1310
BstUI CGCG 2 cut(s) 579, 697
BstV1I GCAGC 6 cut(s) 91, 793, 839, 1003, 1285, 1426
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BstZ17I GTATAC 1 cut(s) 777
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 6 cut(s) 113, 191, 943, 1193, 1223, 1355
BtgZI GCGATG 1 cut(s) 560
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 4 cut(s) 68, 491, 1254, 1459
Cac8I GCNNGC 4 cut(s) 182, 804, 1125, 1434
CciI TCATGA 1 cut(s) 595
CfoI GCGC 3 cut(s) 180, 1214, 1397
Cfr13I GGNCC 5 cut(s) 190, 684, 871, 1033, 1353
CseI GACGC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 502
CviAII CATG 4 cut(s) 284, 289, 596, 1333
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 7 cut(s) 6, 173, 270, 354, 680, 1137, 1398
DinI GGCGCC 1 cut(s) 1213
DpnI GATC 4 cut(s) 365, 402, 905, 1233
DpnII GATC 4 cut(s) 363, 400, 903, 1231
DriI GACNNNNNGTC 1 cut(s) 1070
EaeI YGGCCR 1 cut(s) 1191
Eam1104I CTCTTC 3 cut(s) 42, 228, 743
Eam1105I GACNNNNNGTC 1 cut(s) 1070
EarI CTCTTC 3 cut(s) 42, 228, 743
EciI GGCGGA 1 cut(s) 686
Eco130I CCWWGG 3 cut(s) 687, 745, 1194
Eco147I AGGCCT 2 cut(s) 943, 1223
Eco31I GGTCTC 1 cut(s) 1256
Eco47I GGWCC 3 cut(s) 684, 871, 1033
Eco47III AGCGCT 1 cut(s) 1396
Eco81I CCTNAGG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 843
EcoRII CCWGG 3 cut(s) 229, 666, 1310
EcoT14I CCWWGG 3 cut(s) 687, 745, 1194
EgeI GGCGCC 1 cut(s) 1213
EheI GGCGCC 1 cut(s) 1213
ErhI CCWWGG 3 cut(s) 687, 745, 1194
FaeI CATG 4 cut(s) 287, 292, 599, 1336
FatI CATG 4 cut(s) 283, 288, 595, 1332
FauI CCCGC 1 cut(s) 1121
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 776
Fnu4HI GCNGC 9 cut(s) 80, 114, 312, 807, 828, 1017, 1299, 1412, 1415
FokI GGATG 4 cut(s) 55, 478, 1261, 1466
Fsp4HI GCNGC 9 cut(s) 80, 114, 312, 807, 828, 1017, 1299, 1412, 1415
FspBI CTAG 3 cut(s) 441, 488, 810
GlaI GCGC 3 cut(s) 179, 1213, 1396
GluI GCNGC 9 cut(s) 80, 114, 312, 807, 828, 1017, 1299, 1412, 1415
GsuI CTGGAG 1 cut(s) 1294
HaeII RGCGCY 2 cut(s) 1215, 1398
HaeIII GGCC 6 cut(s) 113, 191, 943, 1193, 1223, 1355
HapII CCGG 2 cut(s) 335, 1266
HgaI GACGC 1 cut(s) 581
HhaI GCGC 3 cut(s) 180, 1214, 1397
Hin1I GRCGYC 1 cut(s) 1212
Hin1II CATG 4 cut(s) 287, 292, 599, 1336
Hin6I GCGC 3 cut(s) 178, 1212, 1395
HinP1I GCGC 3 cut(s) 178, 1212, 1395
HindIII AAGCTT 1 cut(s) 933
HinfI GANTC 5 cut(s) 4, 62, 166, 754, 791
HpaII CCGG 2 cut(s) 335, 1266
HphI GGTGA 2 cut(s) 899, 989
Hpy166II GTNNAC 1 cut(s) 777
Hpy188I TCNGA 8 cut(s) 61, 238, 396, 405, 759, 842, 972, 995
Hpy188III TCNNGA 6 cut(s) 8, 212, 495, 596, 611, 1078
Hpy8I GTNNAC 1 cut(s) 777
Hpy99I CGWCG 1 cut(s) 1463
HpyAV CCTTC 3 cut(s) 66, 82, 275
HpyCH4III ACNGT 3 cut(s) 371, 478, 1362
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 9 cut(s) 79, 206, 574, 785, 802, 827, 916, 1004, 1336
HpyF3I CTNAG 7 cut(s) 6, 173, 270, 354, 680, 1137, 1398
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 1212
Hsp92II CATG 4 cut(s) 287, 292, 599, 1336
HspAI GCGC 3 cut(s) 178, 1212, 1395
KasI GGCGCC 1 cut(s) 1211
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 363, 400, 903, 1231
LguI GCTCTTC 2 cut(s) 42, 228
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 6 cut(s) 91, 793, 839, 1003, 1285, 1426
MaeI CTAG 3 cut(s) 441, 488, 810
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 371, 630, 851
MalI GATC 4 cut(s) 365, 402, 905, 1233
MbiI CCGCTC 1 cut(s) 1411
MboI GATC 4 cut(s) 363, 400, 903, 1231
MboII GAAGA 5 cut(s) 29, 215, 218, 483, 730
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 1193
MluCI AATT 8 cut(s) 460, 549, 640, 762, 767, 843, 1045, 1050
MluNI TGGCCA 1 cut(s) 1193
Mly113I GGCGCC 1 cut(s) 1212
MlyI GAGTC 1 cut(s) 800
Mox20I TGGCCA 1 cut(s) 1193
MroXI GAANNNNTTC 3 cut(s) 36, 618, 1347
MscI TGGCCA 1 cut(s) 1193
MseI TTAA 5 cut(s) 456, 1049, 1145, 1329, 1471
MslI CAYNNNNRTG 2 cut(s) 911, 1239
Msp20I TGGCCA 1 cut(s) 1193
MspA1I CMGCKG 1 cut(s) 172
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 2 cut(s) 335, 1266
MspR9I CCNGG 3 cut(s) 231, 668, 1312
MunI CAATTG 1 cut(s) 767
MvaI CCWGG 3 cut(s) 231, 668, 1312
MvnI CGCG 2 cut(s) 579, 697
NarI GGCGCC 1 cut(s) 1212
NdeII GATC 4 cut(s) 363, 400, 903, 1231
NlaIII CATG 4 cut(s) 287, 292, 599, 1336
NlaIV GGNNCC 4 cut(s) 192, 235, 693, 1213
NmeAIII GCCGAG 1 cut(s) 416
NspI RCATGY 1 cut(s) 1336
NspV TTCGAA 1 cut(s) 637
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 2 cut(s) 943, 1223
PciSI GCTCTTC 2 cut(s) 42, 228
PdmI GAANNNNTTC 3 cut(s) 36, 618, 1347
PfeI GAWTC 3 cut(s) 62, 166, 754
PfoI TCCNGGA 1 cut(s) 1310
PkrI GCNGC 9 cut(s) 81, 115, 313, 808, 829, 1018, 1300, 1413, 1416
PleI GAGTC 1 cut(s) 799
PluTI GGCGCC 1 cut(s) 1215
PpsI GAGTC 1 cut(s) 799
Psp6I CCWGG 3 cut(s) 229, 666, 1310
PspGI CCWGG 3 cut(s) 229, 666, 1310
PspN4I GGNNCC 4 cut(s) 192, 235, 693, 1213
PspPI GGNCC 5 cut(s) 190, 684, 871, 1033, 1353
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 2 cut(s) 911, 1239
SapI GCTCTTC 2 cut(s) 42, 228
SaqAI TTAA 5 cut(s) 456, 1049, 1145, 1329, 1471
SatI GCNGC 9 cut(s) 80, 114, 312, 807, 828, 1017, 1299, 1412, 1415
Sau3AI GATC 4 cut(s) 363, 400, 903, 1231
Sau96I GGNCC 5 cut(s) 190, 684, 871, 1033, 1353
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 3 cut(s) 231, 668, 1312
SfoI GGCGCC 1 cut(s) 1213
SfuI TTCGAA 1 cut(s) 637
SinI GGWCC 3 cut(s) 684, 871, 1033
SmiMI CAYNNNNRTG 2 cut(s) 911, 1239
SmlI CTYRAG 5 cut(s) 42, 359, 455, 831, 1293
SmoI CTYRAG 5 cut(s) 42, 359, 455, 831, 1293
Sse9I AATT 8 cut(s) 460, 549, 640, 762, 767, 843, 1045, 1050
SseBI AGGCCT 2 cut(s) 943, 1223
SsiI CCGC 6 cut(s) 114, 312, 671, 695, 1114, 1411
SspDI GGCGCC 1 cut(s) 1211
SspI AATATT 1 cut(s) 1096
SspMI CTAG 3 cut(s) 441, 488, 810
StuI AGGCCT 2 cut(s) 943, 1223
StyD4I CCNGG 3 cut(s) 229, 666, 1310
StyI CCWWGG 3 cut(s) 687, 745, 1194
TaaI ACNGT 3 cut(s) 371, 478, 1362
TaiI ACGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 213, 451, 553, 637
TasI AATT 8 cut(s) 460, 549, 640, 762, 767, 843, 1045, 1050
TatI WGTACW 1 cut(s) 501
TauI GCSGC 3 cut(s) 116, 314, 1414
TfiI GAWTC 3 cut(s) 62, 166, 754
Tru1I TTAA 5 cut(s) 456, 1049, 1145, 1329, 1471
Tru9I TTAA 5 cut(s) 456, 1049, 1145, 1329, 1471
TseI GCWGC 6 cut(s) 79, 806, 827, 1016, 1298, 1414
TspDTI ATGAA 2 cut(s) 35, 1356
TspGWI ACGGA 3 cut(s) 863, 1105, 1193
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 684, 871, 1033
XagI CCTNNNNNAGG 1 cut(s) 269
XapI RAATTY 3 cut(s) 460, 549, 843
XceI RCATGY 1 cut(s) 1336
XmiI GTMKAC 1 cut(s) 776
XmnI GAANNNNTTC 3 cut(s) 36, 618, 1347
XspI CTAG 3 cut(s) 441, 488, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.