Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Reverse (-)

29437688 .. 29440880

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAGATAATTGGAATAAGGAAAGCAGTATCTAAAGAGAAGAAGGAGTGCGGCAAATTGAAAGTTATTCAATTACACATTGCCGACGATGAGCATGACATGGATGTTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCCAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAAAATACAGTGAGGTGAGTGAATATAGTTATCGTTACATGTGGGTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI Rpn3_C

Protein Analysis

86

Amino Acids

10.02

Weight (kDa)

6.82

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_PSMD3_N	PF25573	13 - 82	4.6e-08	PSMD3-like, N-terminal TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	61, 71
AsuHPI	GGTGA	1 cut(s)	235
BclI	TGATCA	1 cut(s)	202
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	78
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNSI	RCATGY	2 cut(s)	149, 250
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	223
CviAII	CATG	4 cut(s)	95, 100, 146, 247
CviJI	RGCY	1 cut(s)	160
CviKI_1	RGCY	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
FaeI	CATG	4 cut(s)	98, 103, 149, 250
FaiI	YATR	5 cut(s)	96, 101, 147, 234, 248
FatI	CATG	4 cut(s)	94, 99, 145, 246
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	98, 103, 149, 250
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	198, 207
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	98, 103, 149, 250
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	3 cut(s)	167, 168, 174
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	16, 52
MluCI	AATT	3 cut(s)	9, 56, 71
MnlI	CCTC	2 cut(s)	160, 214
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	4 cut(s)	98, 103, 149, 250
NspI	RCATGY	2 cut(s)	149, 250
PciI	ACATGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	246
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	202
SetI	ASST	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	9, 56, 71
SsiI	CCGC	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	3 cut(s)	9, 56, 71
TauI	GCSGC	1 cut(s)	54
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	2 cut(s)	149, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.