Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Reverse (-)

38932309 .. 38933977

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCGGGATGATGAGCATGACATGGATGTTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCCGAGCTAGAGATTTACTGCTACTTGCTGGAAGAGAGGAACACAACCCAAGTGGTAACAGAGCTTGAGGTGGCTAGAGGTGGAAGAACCTGGTTGCAACCCGTTTTGGTTATCCTCTTTGATACGCTGCCATGGGTGGTTATGGAGGTTGGTGGAGCTCAAGTAGCAACTAGACAAAACCAGCCGATCTTTTTAGAACCGGTTCAATGGCCAAAGGAGGCGCAGGGGCACAGAAAAAATCAAGTCACCCGTTTTGGTGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI Rpn3_C

Protein Analysis

113

Amino Acids

12.8

Weight (kDa)

5.1

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	284
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	82, 139, 233
AluI	AGCT	3 cut(s)	82, 139, 233
Alw21I	GWGCWC	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	202
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	166
BfaI	CTAG	3 cut(s)	83, 150, 246
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	166
BpuEI	CTTGAG	3 cut(s)	36, 161, 219
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse118I	RCCGGY	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	13, 31
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	1 cut(s)	286
BshTI	ACCGGT	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	235, 306
Bsp143I	GATC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	13, 31
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 239
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	13, 31
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	274
CsiI	ACCWGGT	1 cut(s)	164
CspAI	ACCGGT	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	4 cut(s)	17, 22, 68, 207
CviJI	RGCY	6 cut(s)	82, 139, 149, 233, 259, 286
CviKI_1	RGCY	6 cut(s)	82, 139, 149, 233, 259, 286
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	235
Eco53kI	GAGCTC	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	20, 25, 71, 210
FaiI	YATR	5 cut(s)	18, 23, 69, 208, 218
FatI	CATG	4 cut(s)	16, 21, 67, 206
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	20, 38
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	3 cut(s)	83, 150, 246
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	4 cut(s)	20, 25, 71, 210
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	38, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 239
Hsp92II	CATG	4 cut(s)	20, 25, 71, 210
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	6 cut(s)	89, 151, 178, 269, 284, 288
Lsp1109I	GCAGC	1 cut(s)	189
MabI	ACCWGGT	1 cut(s)	164
MaeI	CTAG	3 cut(s)	83, 150, 246
MaeIII	GTNAC	2 cut(s)	130, 319
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	119, 171
MhlI	GDGCHC	2 cut(s)	235, 306
MlsI	TGGCCA	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	286
MnlI	CCTC	7 cut(s)	82, 105, 136, 146, 200, 214, 286
Mox20I	TGGCCA	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	286
Msp20I	TGGCCA	1 cut(s)	286
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	44, 239
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	4 cut(s)	20, 25, 71, 210
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	276
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	235
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	235, 306
SetI	ASST	7 cut(s)	84, 141, 147, 157, 167, 225, 235
SexAI	ACCWGGT	1 cut(s)	164
SmlI	CTYRAG	3 cut(s)	51, 140, 234
SmoI	CTYRAG	3 cut(s)	51, 140, 234
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	83, 150, 246
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	319
XceI	RCATGY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	83, 150, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.