Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002752

Physical Location & Seq

Genomic Coordinates Forward (+)

23550329 .. 23551514

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTTGGTGGCATTGGAACCGCAAGAAAGAGAGAAAAACAACCTAAGTGCATGATGACGGTGCTCGAAGTGGTTGAAGGAGGAAGAATCCAGTTGCAACTTGTTTTGGCTATCCTCTTCAATACACCGCCATTGGCGGTTATGGAGGGTGGTGGAGCTCGGGCAGTGACTAGACAGGACCATGTAGTCCTTTTGAAACCGGTTCTATGGCCGGAGAAGGCTTGCTGTGGCAAAGAGACAGGGCCTTCGCTTTATTACATTGACGACTCTGCTAATTCACTCCACAAGGTTGACAAGGGAGCATTTGGTCATTGCACTTTCCTTGATGAACAGGCACTAACACAGTGGCATGTCTGTGGAAGAGGTCATCGATCGACTTGGTTGATAAGTGCATCATTCAGATCCGGTCAAGGCCGGTGTTGGCACCACCAAACTTCTTCATCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005886 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

150

Amino Acids

16.4

Weight (kDa)

9.17

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20200 AT1G75990
fragaria_vesca	FvH4_2g15510 FvH4_2g15510
malus_domestica	MD05G1123400.v1.1 MD08G1008900.v1.1 MD10G1126400.v1.1
prunus_persica	Prupe.1G360600_v2.0.a1 Prupe.1G360600_v2.0.a1 Prupe.8G167300_v2.0.a1
pyrus_communis	pycom05g11770 pycom06g20010 pycom10g10860
rosa_chinensis	RchiOBHm_Chr6g0278511
rosa_laevigata	RLG00000007962 RLG00000013222
rosa_multiflora	Rmu_sc0000258.1_g000009 Rmu_sc0002777.1_g000004
rosa_roxburghii	Rroxscaffold_1G00029920 Rroxscaffold_4G00323800 Rroxscaffold_7G00189830 Rroxscaffold_7G00190320
rosa_rugosa	Rorug06G0117600
rosa_samantha	Rh2AG183600 Rh2AG196400 Rh2BG209000 Rh2DG190000 Rh2DG204200 Rh4AG134600 Rh4AG183800 Rh4DG179200 Rh5AG337600 Rh6AG226700 Rh6BG230900 Rh6CG234000 Rh6DG225300
rosa_wichuraiana	Rw0G003080 Rw4G016480 Rw6G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	423
AciI	CCGC	3 cut(s)	21, 128, 137
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	209
AgeI	ACCGGT	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	77, 121, 196
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	2 cut(s)	66, 160
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	3 cut(s)	209, 242, 412
ArsI	GACNNNNNNTTYG	2 cut(s)	229, 261
AsiGI	ACCGGT	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	178, 242
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	2 cut(s)	66, 160
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	178, 242
BmiI	GGNNCC	2 cut(s)	19, 425
BmsI	GCATC	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	370
BsaWI	WCCGGW	2 cut(s)	199, 404
Bse118I	RCCGGY	2 cut(s)	199, 414
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	3 cut(s)	211, 244, 414
BshNI	GGYRCC	1 cut(s)	423
BshTI	ACCGGT	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	370
BsiEI	CGRYCG	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	66, 160
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	200, 212, 405, 415
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	211, 244, 414
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	66, 160
Bsp143I	GATC	2 cut(s)	371, 401
BspACI	CCGC	3 cut(s)	21, 128, 137
BspANI	GGCC	3 cut(s)	211, 244, 414
BspDI	ATCGAT	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	19, 425
BspPI	GGATC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	2 cut(s)	199, 414
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	2 cut(s)	199, 414
BssMI	GATC	2 cut(s)	371, 401
Bst4CI	ACNGT	2 cut(s)	61, 345
Bst6I	CTCTTC	2 cut(s)	122, 355
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	374, 404
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	371, 401
BstMCI	CGRYCG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
Bsu15I	ATCGAT	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	211, 244, 414
BsuTUI	ATCGAT	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 350
Cac8I	GCNNGC	1 cut(s)	223
Cfr10I	RCCGGY	2 cut(s)	199, 414
Cfr13I	GGNCC	2 cut(s)	178, 242
ClaI	ATCGAT	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	199
CviAII	CATG	3 cut(s)	52, 182, 350
CviJI	RGCY	6 cut(s)	110, 158, 211, 221, 244, 414
CviKI_1	RGCY	6 cut(s)	110, 158, 211, 221, 244, 414
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	373, 403
DpnII	GATC	2 cut(s)	371, 401
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	122, 355
EarI	CTCTTC	2 cut(s)	122, 355
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	3 cut(s)	55, 185, 353
FaiI	YATR	5 cut(s)	53, 143, 183, 208, 351
FatI	CATG	3 cut(s)	51, 181, 349
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	211, 244, 414
HapII	CCGG	4 cut(s)	200, 212, 405, 415
Hin1II	CATG	3 cut(s)	55, 185, 353
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	87, 266
HpaII	CCGG	4 cut(s)	200, 212, 405, 415
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	3 cut(s)	71, 211, 255
HpyCH4III	ACNGT	2 cut(s)	61, 345
HpyCH4V	TGCA	4 cut(s)	51, 97, 315, 392
HpyF3I	CTNAG	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	55, 185, 353
Kzo9I	GATC	2 cut(s)	371, 401
LmnI	GCTCC	2 cut(s)	155, 299
LpnPI	CCDG	8 cut(s)	104, 161, 213, 225, 225, 317, 418, 428
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	373, 403
MboI	GATC	2 cut(s)	371, 401
MboII	GAAGA	4 cut(s)	96, 109, 372, 429
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	66, 160
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	74, 125, 139, 356
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	4 cut(s)	200, 212, 405, 415
NdeII	GATC	2 cut(s)	371, 401
NlaIII	CATG	3 cut(s)	55, 185, 353
NlaIV	GGNNCC	2 cut(s)	19, 425
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	87
PinAI	ACCGGT	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	374
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	19, 425
PspPI	GGNCC	2 cut(s)	178, 242
PsuI	RGATCY	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	371, 401
Sau96I	GGNCC	2 cut(s)	178, 242
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	66, 160
SetI	ASST	4 cut(s)	46, 160, 291, 367
SfaNI	GCATC	1 cut(s)	401
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	3 cut(s)	21, 128, 137
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	61, 345
TaqI	TCGA	3 cut(s)	66, 370, 374
TasI	AATT	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	87
TscAI	CASTG	2 cut(s)	171, 350
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	342, 429
TspRI	CASTG	2 cut(s)	171, 350
VpaK11BI	GGWCC	1 cut(s)	178
XceI	RCATGY	1 cut(s)	353
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.