pycom05g11770

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
15336669 .. 15339848
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11770.2

Sequence Viewer

Length: 1446 bp
ATGAAGGAGGTCCCGGTGCCTTCCAACTCAGTTTCTTCGACTTCTCCGTCAACTTTACACAATTTGAAGGAGATTGCTTCACTCCTTGAGACTGCTGCTTATACCCGGGAGGTTAGGCGGATTGTGCGTGCCGTTAGGCTAACGATGGTGTTGAGGCGGAAGCTGAAGGTTTCTGTGATGTCAGCATTCCTCAATTTTGCCCTTACACCGGGATCTGAGGTTCATAGCCGTTTATCGTCCTTTCTTCCCAAGGATGATGAACTGGATATGGACGTTGATACCGCAACATCTGCTACTCAAGTTCCCGCAAAACATGCCTTGCCAGAGCTAGAGATGTACTCCTACTTGCTTGTGCTCATTTTTCTGATTGATCAGAAAAAGTACAATGAGGCTAAAGCTTGTGCCTCGGCAAGCATTGCTCGTATTAAGAACTTGAATAGGAGAACCATTGATGTTCTGGCATCCAGGCTGTACTTCTATTACTCCCTTAGCTATGAACTCACTGGTGATCTTGCAGAAATTAGAGGAAATCTCCTGAATCTTCACCGGATTGCCACTTTGCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATCTTCTGCTTCGCAATTATCTCCACTATAACCTGTATGATCAGGCAGAGAAACTGAGGTCCAAGGCACCTCGATTTGAGGCTCACTCCAACCAGCAGTTCTGTCGGTATCTCTTTTACCTAGGAAAGATCAGAACAATTCAGTTGGAGTACACTGATGCAAAGGAGTCCCTCCTGCAAGCTGCTAGGAAAGCTCCTATAGCAGCCCTTGGTTTTCGGATTCAGTGCAACAAGTGGGCAATCATTGTACGGTTGTTGCTTGGAGAAATCCCTGAGAGAACCGTTTTTATGCAAAAAGGCATGGAGAAGGCGTTGCGGCCATACTTCGAACTAACAAATGCTGTGAGAATTGGTGACTTGGAGCTTTTCAAGAATATTGCAGAAAAGTTCTCGGATGTATTCAATGCAGACCGAACCCATAATTTGATTGTTAGGCTGCGACATAATGTCATAAGGACTGGGTTGCGTAACATTAGCATCTCTTATTCCCGTATTTCTCTGGTTGATGTTGCTAAAAAGTTGCGATTGGACTCTCCAAACCCGGTTGCTGATGCTGAAAGCATTGTGGCGAAGGCAATCCGAGATGGTGCAATTGATGCCACTCTGGATCATGCAAATGGATGGATGGTGTCAAAGGAAACTGGGGATATCTACTCCACTAACGAGCCCCAAGCTGCATTCGACACAAGAATTGCATTTTGCCTCAATTTGCACAACGATGCAGTGCGAGCACTTAGGTTCCCACCAAATTCCCACAAGGAGAAAGAAAGTGCTGAGAAGAGGAGGGAGAGGCAACAACAGGAGCAAGAGCTTGCAAAGCACATAGCCGAGGAAGATGATGATGAGTTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

54.94

Weight (kDa)

8.99

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 2 cut(s) 16, 661
AciI CCGC 5 cut(s) 118, 157, 282, 306, 910
AclWI GGATC 2 cut(s) 220, 1209
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 1 cut(s) 1342
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 5 cut(s) 338, 383, 473, 746, 843
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 4 cut(s) 67, 436, 964, 997
AhdI GACNNNNNGTC 1 cut(s) 1040
AjnI CCWGG 1 cut(s) 464
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
Alw21I GWGCWC 2 cut(s) 357, 1327
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 220, 1209
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 5 cut(s) 95, 776, 797, 1030, 1268
ApoI RAATTY 1 cut(s) 1342
Asp700I GAANNNNTTC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 715
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 2 cut(s) 10, 654
AsuC2I CCSGG 5 cut(s) 14, 106, 107, 210, 1136
AsuHPI GGTGA 3 cut(s) 518, 536, 959
AsuII TTCGAA 1 cut(s) 921
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 2 cut(s) 10, 654
AvrII CCTAGG 1 cut(s) 715
BanI GGYRCC 2 cut(s) 16, 661
BanII GRGCYC 1 cut(s) 1263
Bbv12I GWGCWC 2 cut(s) 357, 1327
BbvI GCAGC 5 cut(s) 82, 763, 809, 1017, 1255
BccI CCATC 4 cut(s) 139, 1172, 1209, 1213
BceAI ACGGC 2 cut(s) 116, 213
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 1 cut(s) 466
BclI TGATCA 2 cut(s) 370, 634
BcnI CCSGG 5 cut(s) 14, 106, 107, 210, 1136
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 3 cut(s) 329, 716, 780
BfmI CTRYAG 1 cut(s) 792
BisI GCNGC 6 cut(s) 96, 777, 798, 911, 1031, 1269
BlnI CCTAGG 1 cut(s) 715
BlsI GCNGC 6 cut(s) 97, 778, 799, 912, 1032, 1270
Bme1390I CCNGG 6 cut(s) 14, 106, 107, 210, 466, 1136
Bme18I GGWCC 2 cut(s) 10, 654
BmeRI GACNNNNNGTC 1 cut(s) 1040
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 10, 654
BmiI GGNNCC 4 cut(s) 12, 18, 663, 1334
BmrFI CCNGG 6 cut(s) 14, 106, 107, 210, 466, 1136
BmrI ACTGGG 2 cut(s) 1062, 1245
BmsI GCATC 6 cut(s) 470, 742, 1080, 1135, 1180, 1303
BmuI ACTGGG 2 cut(s) 1062, 1245
BplI GAGNNNNNCTC 6 cut(s) 323, 355, 516, 548, 665, 697
Bpu10I CCTNAGC 1 cut(s) 488
Bpu14I TTCGAA 1 cut(s) 921
BpuEI CTTGAG 2 cut(s) 107, 282
BpuMI CCSGG 5 cut(s) 14, 106, 107, 210, 1136
BsaJI CCNNGG 7 cut(s) 105, 249, 405, 657, 715, 802, 1422
BsaWI WCCGGW 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 4 cut(s) 267, 508, 1057, 1240
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 7 cut(s) 105, 249, 405, 657, 715, 802, 1422
BseGI GGATG 5 cut(s) 259, 461, 994, 1220, 1224
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 5 cut(s) 42, 207, 641, 858, 1359
BseNI ACTGG 4 cut(s) 267, 508, 1057, 1240
BseRI GAGGAG 1 cut(s) 1390
BseXI GCAGC 5 cut(s) 82, 763, 809, 1017, 1255
BseYI CCCAGC 1 cut(s) 574
BshFI GGCC 1 cut(s) 913
BshNI GGYRCC 2 cut(s) 16, 661
BsiHKAI GWGCWC 2 cut(s) 357, 1327
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 5 cut(s) 14, 106, 209, 547, 1136
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 748
BsmI GAATGC 2 cut(s) 185, 1271
BsnI GGCC 1 cut(s) 913
BsoBI CYCGRG 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 921
Bsp1286I GDGCHC 3 cut(s) 357, 1263, 1327
Bsp143I GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
BspACI CCGC 5 cut(s) 118, 157, 282, 306, 910
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 5 cut(s) 41, 208, 642, 859, 1360
BspLI GGNNCC 4 cut(s) 12, 18, 663, 1334
BspPI GGATC 2 cut(s) 220, 1209
BspT104I TTCGAA 1 cut(s) 921
BspT107I GGYRCC 2 cut(s) 16, 661
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 4 cut(s) 267, 508, 1057, 1240
BssECI CCNNGG 7 cut(s) 105, 249, 405, 657, 715, 802, 1422
BssMI GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
BssT1I CCWWGG 4 cut(s) 249, 657, 715, 802
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 846, 877
Bst6I CTCTTC 1 cut(s) 1367
BstAPI GCANNNNNTGC 4 cut(s) 290, 314, 416, 1190
BstBI TTCGAA 1 cut(s) 921
BstC8I GCNNGC 5 cut(s) 129, 412, 774, 1323, 1407
BstDEI CTNAG 7 cut(s) 28, 216, 488, 650, 867, 1328, 1368
BstF5I GGATG 5 cut(s) 259, 461, 994, 1220, 1224
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 6 cut(s) 215, 373, 511, 637, 726, 1204
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
BstMWI GCNNNNNNNGC 9 cut(s) 124, 290, 314, 416, 785, 794, 1190, 1322, 1411
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 6 cut(s) 12, 104, 105, 208, 464, 1134
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 82, 763, 809, 1017, 1255
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 1 cut(s) 913
BtsCI GGATG 5 cut(s) 259, 461, 994, 1220, 1224
BtsI GCAGTG 1 cut(s) 1323
BtsIMutI CAGTG 4 cut(s) 501, 747, 824, 1323
Cac8I GCNNGC 5 cut(s) 129, 412, 774, 1323, 1407
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 2 cut(s) 10, 654
Cfr9I CCCGGG 1 cut(s) 105
Csp6I GTAC 5 cut(s) 337, 382, 472, 745, 842
CviAII CATG 4 cut(s) 314, 566, 895, 1205
CviQI GTAC 5 cut(s) 337, 382, 472, 745, 842
DdeI CTNAG 7 cut(s) 28, 216, 488, 650, 867, 1328, 1368
DpnI GATC 6 cut(s) 214, 372, 510, 636, 725, 1203
DpnII GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
DrdI GACNNNNNNGTC 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 1040
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 1367
Eam1105I GACNNNNNGTC 1 cut(s) 1040
EarI CTCTTC 1 cut(s) 1367
EciI GGCGGA 2 cut(s) 133, 172
Eco130I CCWWGG 4 cut(s) 249, 657, 715, 802
Eco24I GRGCYC 1 cut(s) 1263
Eco32I GATATC 1 cut(s) 1243
Eco47I GGWCC 2 cut(s) 10, 654
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 464
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 4 cut(s) 249, 657, 715, 802
EcoT38I GRGCYC 1 cut(s) 1263
ErhI CCWWGG 4 cut(s) 249, 657, 715, 802
FaeI CATG 4 cut(s) 317, 569, 898, 1208
FaqI GGGAC 1 cut(s) 748
FatI CATG 4 cut(s) 313, 565, 894, 1204
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 2 cut(s) 370, 634
Fnu4HI GCNGC 6 cut(s) 96, 777, 798, 911, 1031, 1269
FokI GGATG 5 cut(s) 266, 448, 1001, 1227, 1231
FriOI GRGCYC 1 cut(s) 1263
Fsp4HI GCNGC 6 cut(s) 96, 777, 798, 911, 1031, 1269
FspBI CTAG 3 cut(s) 329, 716, 780
GlaI GCGC 1 cut(s) 563
GluI GCNGC 6 cut(s) 96, 777, 798, 911, 1031, 1269
GsaI CCCAGC 1 cut(s) 578
HaeIII GGCC 1 cut(s) 913
HapII CCGG 5 cut(s) 14, 106, 209, 547, 1136
HhaI GCGC 1 cut(s) 564
Hin1II CATG 4 cut(s) 317, 569, 898, 1208
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 4 cut(s) 538, 761, 814, 1124
HpaII CCGG 5 cut(s) 14, 106, 209, 547, 1136
HphI GGTGA 3 cut(s) 518, 536, 959
Hpy166II GTNNAC 2 cut(s) 51, 747
Hpy188I TCNGA 7 cut(s) 217, 366, 375, 728, 813, 988, 1175
Hpy188III TCNNGA 4 cut(s) 535, 581, 964, 1199
Hpy8I GTNNAC 2 cut(s) 51, 747
HpyAV CCTTC 5 cut(s) 30, 61, 160, 895, 1159
HpyCH4III ACNGT 2 cut(s) 846, 877
HpyCH4IV ACGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 9 cut(s) 124, 290, 314, 416, 785, 794, 1190, 1322, 1411
HpyF3I CTNAG 7 cut(s) 28, 216, 488, 650, 867, 1328, 1368
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 4 cut(s) 317, 569, 898, 1208
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 2 cut(s) 370, 634
Kzo9I GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
LmnI GCTCC 3 cut(s) 793, 955, 1396
Lsp1109I GCAGC 5 cut(s) 82, 763, 809, 1017, 1255
LweI GCATC 6 cut(s) 470, 742, 1080, 1135, 1180, 1303
MaeI CTAG 3 cut(s) 329, 716, 780
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 947, 1061
MalI GATC 6 cut(s) 214, 372, 510, 636, 725, 1203
MboI GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
MboII GAAGA 6 cut(s) 27, 236, 533, 590, 1384, 1439
MfeI CAATTG 1 cut(s) 1185
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 3 cut(s) 357, 1263, 1327
MlyI GAGTC 2 cut(s) 770, 1118
MmeI TCCRAC 3 cut(s) 48, 708, 720
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 2 cut(s) 426, 594
MslI CAYNNNNRTG 2 cut(s) 1209, 1311
MspI CCGG 5 cut(s) 14, 106, 209, 547, 1136
MspR9I CCNGG 6 cut(s) 14, 106, 107, 210, 466, 1136
MunI CAATTG 1 cut(s) 1185
Mva1269I GAATGC 2 cut(s) 185, 1271
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 9 cut(s) 124, 290, 314, 416, 785, 794, 1190, 1322, 1411
NciI CCSGG 5 cut(s) 14, 106, 107, 210, 1136
NdeII GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
NlaIII CATG 4 cut(s) 317, 569, 898, 1208
NlaIV GGNNCC 4 cut(s) 12, 18, 663, 1334
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 947
NspI RCATGY 1 cut(s) 317
NspV TTCGAA 1 cut(s) 921
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 2 cut(s) 185, 1271
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 538, 814
PkrI GCNGC 6 cut(s) 97, 778, 799, 912, 1032, 1270
PleI GAGTC 2 cut(s) 769, 1118
PpsI GAGTC 2 cut(s) 769, 1118
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 4 cut(s) 12, 18, 663, 1334
PspPI GGNCC 2 cut(s) 10, 654
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 5 cut(s) 338, 383, 473, 746, 843
RsaNI GTAC 5 cut(s) 337, 382, 472, 745, 842
RseI CAYNNNNRTG 2 cut(s) 1209, 1311
SaqAI TTAA 2 cut(s) 426, 594
SatI GCNGC 6 cut(s) 96, 777, 798, 911, 1031, 1269
Sau3AI GATC 6 cut(s) 212, 370, 508, 634, 723, 1201
Sau96I GGNCC 2 cut(s) 10, 654
SchI GAGTC 2 cut(s) 770, 1118
ScrFI CCNGG 6 cut(s) 14, 106, 107, 210, 466, 1136
SduI GDGCHC 3 cut(s) 357, 1263, 1327
SfaNI GCATC 6 cut(s) 470, 742, 1080, 1135, 1180, 1303
SfcI CTRYAG 1 cut(s) 792
SfuI TTCGAA 1 cut(s) 921
SinI GGWCC 2 cut(s) 10, 654
SmaI CCCGGG 1 cut(s) 107
SmiMI CAYNNNNRTG 2 cut(s) 1209, 1311
SmlI CTYRAG 2 cut(s) 86, 297
SmoI CTYRAG 2 cut(s) 86, 297
SsiI CCGC 5 cut(s) 118, 157, 282, 306, 910
SspI AATATT 1 cut(s) 970
SspMI CTAG 3 cut(s) 329, 716, 780
StyD4I CCNGG 6 cut(s) 12, 104, 105, 208, 464, 1134
StyI CCWWGG 4 cut(s) 249, 657, 715, 802
TaaI ACNGT 2 cut(s) 846, 877
TaiI ACGT 1 cut(s) 276
TaqI TCGA 4 cut(s) 38, 667, 921, 1275
TaqII GACCGA 1 cut(s) 1020
TatI WGTACW 4 cut(s) 336, 381, 471, 744
TauI GCSGC 1 cut(s) 913
TfiI GAWTC 2 cut(s) 538, 814
Tru1I TTAA 2 cut(s) 426, 594
Tru9I TTAA 2 cut(s) 426, 594
TscAI CASTG 4 cut(s) 508, 754, 824, 1323
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 5 cut(s) 95, 776, 797, 1030, 1268
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 4 cut(s) 17, 212, 273, 510
TspGWI ACGGA 1 cut(s) 36
TspMI CCCGGG 1 cut(s) 105
TspRI CASTG 4 cut(s) 508, 754, 824, 1323
VpaK11BI GGWCC 2 cut(s) 10, 654
XapI RAATTY 1 cut(s) 1342
XceI RCATGY 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmaI CCCGGG 1 cut(s) 105
XmaJI CCTAGG 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 3 cut(s) 329, 716, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.