AT1G22160

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003160
Physical Location & Seq
Forward (+)
7823066 .. 7823971
906 bp
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UTR
Exon/CDS
Intron
AT1G22160.1

Sequence Viewer

Length: 444 bp
ATGTTGCTAGGGAAGAGACAGAGACCACCAATAAAGAGAACCACGAGTCTATCTGAGATTAAGTTCGATTTGAATCAACCTAGCGAACAAGAACCATCCGATCATCAGATTCAGCTTGTGAACGTTGATGAACATCGTCAAGTTCATCAAAGATTGTTAGATCAACGGCTTTTAGCGATGGTCTCACCAAGAGGTACACAGAGAAGACACTCAAGTGATTATTCTGAAGATTTTCTAAGATCTTGCTCTCTTTGTAAACGTCTTCTTGTTCATGGCCGTGACATCTATATGTATAGAGGAGATAGAGCGTTTTGTAGTTTAGAGTGCAGGCAACAACAAATTACAGTGGACGAGAGGAAGGAGAAGAAGAAAGGTTCGGTGAGGTCCACCATCGTCGTCGCCACCGGAACCACCACAGGAGAGAGAGTTTCCGCCGCCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

147

Amino Acids

16.96

Weight (kDa)

9.69

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 69 - 120 1.7e-24 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 432, 435
AclI AACGTT 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 196
AgsI TTSAA 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 10, 16, 187
AoxI GGCC 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 177, 391
AvaII GGWCC 1 cut(s) 384
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 2 cut(s) 211, 254
BccI CCATC 3 cut(s) 103, 172, 398
BceAI ACGGC 3 cut(s) 182, 261, 422
BcoDI GTCTC 3 cut(s) 10, 16, 187
BfaI CTAG 2 cut(s) 8, 81
BglII AGATCT 1 cut(s) 239
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 1 cut(s) 409
BpiI GAAGAC 2 cut(s) 211, 254
BpuEI CTTGAG 1 cut(s) 196
BsaBI GATNNNNATC 2 cut(s) 72, 132
BsaI GGTCTC 2 cut(s) 16, 187
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bse8I GATNNNNATC 2 cut(s) 72, 132
BseGI GGATG 1 cut(s) 95
BseJI GATNNNNATC 2 cut(s) 72, 132
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 346
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 405
BsmAI GTCTC 3 cut(s) 10, 16, 187
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 2 cut(s) 16, 187
Bsp143I GATC 3 cut(s) 100, 160, 239
BspACI CCGC 2 cut(s) 432, 435
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 409
BspTNI GGTCTC 2 cut(s) 16, 187
BssMI GATC 3 cut(s) 100, 160, 239
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 54, 236
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 3 cut(s) 103, 163, 242
BstMAI GTCTC 3 cut(s) 10, 16, 187
BstMBI GATC 3 cut(s) 100, 160, 239
BstV2I GAAGAC 2 cut(s) 211, 254
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 195
CviAII CATG 1 cut(s) 272
CviJI RGCY 3 cut(s) 115, 169, 276
CviKI_1 RGCY 3 cut(s) 115, 169, 276
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 2 cut(s) 54, 236
DpnI GATC 3 cut(s) 102, 162, 241
DpnII GATC 3 cut(s) 100, 160, 239
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 1 cut(s) 421
Eco31I GGTCTC 2 cut(s) 16, 187
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 246
FaeI CATG 1 cut(s) 275
FaiI YATR 4 cut(s) 273, 288, 290, 294
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 2 cut(s) 8, 81
GluI GCNGC 1 cut(s) 435
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 405
Hin1II CATG 1 cut(s) 275
HinfI GANTC 3 cut(s) 46, 73, 109
HpaII CCGG 1 cut(s) 405
HphI GGTGA 2 cut(s) 177, 391
Hpy166II GTNNAC 5 cut(s) 121, 197, 257, 349, 387
Hpy188I TCNGA 4 cut(s) 55, 100, 108, 226
Hpy8I GTNNAC 5 cut(s) 121, 197, 257, 349, 387
Hpy99I CGWCG 2 cut(s) 398, 401
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 123, 259
HpyCH4V TGCA 1 cut(s) 327
HpyF3I CTNAG 2 cut(s) 54, 236
HpySE526I ACGT 2 cut(s) 123, 259
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 3 cut(s) 100, 160, 239
LpnPI CCDG 3 cut(s) 313, 402, 418
MaeI CTAG 2 cut(s) 8, 81
MaeII ACGT 2 cut(s) 123, 259
MaeIII GTNAC 1 cut(s) 278
MalI GATC 3 cut(s) 102, 162, 241
MboI GATC 3 cut(s) 100, 160, 239
MboII GAAGA 6 cut(s) 25, 216, 239, 254, 376, 379
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 4 cut(s) 185, 290, 348, 375
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 3 cut(s) 213, 276, 287
MspI CCGG 1 cut(s) 405
NdeII GATC 3 cut(s) 100, 160, 239
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 73, 109
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 3 cut(s) 213, 276, 287
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 3 cut(s) 100, 160, 239
Sau96I GGNCC 1 cut(s) 384
SchI GAGTC 1 cut(s) 55
SetI ASST 7 cut(s) 82, 117, 126, 196, 262, 376, 386
SinI GGWCC 1 cut(s) 384
SmiMI CAYNNNNRTG 3 cut(s) 213, 276, 287
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 339
SsiI CCGC 2 cut(s) 432, 435
SspMI CTAG 2 cut(s) 8, 81
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 126, 262
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 339
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 2 cut(s) 73, 109
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 134, 144, 260
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 2 cut(s) 8, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.