RchiOBHm_Chr2g0115261

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003160
Physical Location & Seq
Forward (+)
27298419 .. 27299977
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48845

Sequence Viewer

Length: 519 bp
ATGTTGTTAGGGAAGCGTCCTCGCCCACCGATTAGGAGAACGACAAGCATGACCGGGATCACCGTCGATCTGAACAACGTGGAAGACCAGGAGCCGACTGAAAACCCTAGCATGATGGATGTGCATGCATCATCGACGGAGGTGGGCCCTGATGGGCCTGTTAATTATAATCAGAGCCCTAACAGCTTGGGGTATCATGAACAGCACCGTTTCTTGGCCATGTTGTCACCCAGAACCAACAGCAGCAACCACAGAAGAAACTCGGCCTCCGACCTAGTCGAAACCGCTCACTTCCTCCGCACGTGCGGCCTCTGCAAACGGAGCTTGGCTTCCGGCCGCGACCTCTACATGTATAGGGGAGATACAGCTTTTTGCAGCCTGGAATGCAGAGAGCAGCAGATGAAGCAAGACGAGAGAGTAGAGAAGTGTAAGGGGGTGGCCTCGAAGAAAGAGGACCGCCATGCAACTCGACCGAGTTCCAAGGCCTCTGGTAAAACCCAGACTGTGGCCGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

172

Amino Acids

19.15

Weight (kDa)

9.06

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 90 - 139 5.2e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 287
AccII CGCG 1 cut(s) 339
AciI CCGC 6 cut(s) 285, 298, 306, 337, 457, 510
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 3 cut(s) 216, 334, 507
AcvI CACGTG 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 214, 505
AflIII ACRYGT 1 cut(s) 348
AjnI CCWGG 2 cut(s) 87, 378
AluBI AGCT 3 cut(s) 186, 324, 368
AluI AGCT 3 cut(s) 186, 324, 368
AlwI GGATC 1 cut(s) 65
AoxI GGCC 9 cut(s) 145, 155, 216, 264, 307, 334, 438, 483, 507
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 243, 375, 394, 512
AspS9I GGNCC 4 cut(s) 145, 146, 155, 454
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 52, 219
AvaII GGWCC 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 2 cut(s) 149, 179
BbrPI CACGTG 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 255, 387, 406, 499
BccI CCATC 2 cut(s) 109, 146
BciT130I CCWGG 2 cut(s) 89, 380
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 2 cut(s) 108, 275
BisI GCNGC 7 cut(s) 244, 307, 337, 376, 395, 510, 513
BlsI GCNGC 7 cut(s) 245, 308, 338, 377, 396, 511, 514
Bme1390I CCNGG 3 cut(s) 55, 89, 380
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 4 cut(s) 145, 146, 155, 454
BmiI GGNNCC 2 cut(s) 93, 147
BmrFI CCNGG 3 cut(s) 55, 89, 380
BmsI GCATC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 480
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 505
BseBI CCWGG 2 cut(s) 89, 380
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 214, 505
BseSI GKGCMC 1 cut(s) 149
BseX3I CGGCCG 1 cut(s) 334
BseXI GCAGC 4 cut(s) 255, 387, 406, 499
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 2 cut(s) 337, 473
BshFI GGCC 9 cut(s) 147, 157, 218, 266, 309, 336, 440, 485, 509
BsiEI CGRYCG 2 cut(s) 337, 473
BsiSI CCGG 2 cut(s) 54, 333
BslI CCNNNNNNNGG 2 cut(s) 214, 505
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 9 cut(s) 147, 157, 218, 266, 309, 336, 440, 485, 509
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 149, 179
Bsp143I GATC 2 cut(s) 57, 67
BspACI CCGC 6 cut(s) 285, 298, 306, 337, 457, 510
BspANI GGCC 9 cut(s) 147, 157, 218, 266, 309, 336, 440, 485, 509
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 93, 147
BspPI GGATC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 2 cut(s) 57, 67
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 89, 380
Bst4CI ACNGT 3 cut(s) 64, 209, 505
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 2 cut(s) 60, 70
BstMBI GATC 2 cut(s) 57, 67
BstMCI CGRYCG 2 cut(s) 337, 473
BstMWI GCNNNNNNNGC 6 cut(s) 183, 306, 312, 321, 384, 403
BstNI CCWGG 2 cut(s) 89, 380
BstNSI RCATGY 2 cut(s) 128, 352
BstSCI CCNGG 3 cut(s) 53, 87, 378
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 4 cut(s) 255, 387, 406, 499
BstV2I GAAGAC 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 9 cut(s) 147, 157, 218, 266, 309, 336, 440, 485, 509
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 4 cut(s) 145, 146, 155, 454
CseI GACGC 1 cut(s) 5
CviAII CATG 7 cut(s) 49, 112, 125, 197, 220, 349, 461
DpnI GATC 2 cut(s) 59, 69
DpnII GATC 2 cut(s) 57, 67
EaeI YGGCCR 3 cut(s) 216, 334, 507
EagI CGGCCG 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 480
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 2 cut(s) 149, 179
Eco47I GGWCC 1 cut(s) 454
Eco52I CGGCCG 1 cut(s) 334
Eco72I CACGTG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 87, 378
EcoT14I CCWWGG 1 cut(s) 480
EcoT22I ATGCAT 1 cut(s) 130
EcoT38I GRGCYC 2 cut(s) 149, 179
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 7 cut(s) 52, 115, 128, 200, 223, 352, 464
FaiI YATR 9 cut(s) 50, 113, 126, 168, 198, 221, 350, 354, 462
FatI CATG 7 cut(s) 48, 111, 124, 196, 219, 348, 460
Fnu4HI GCNGC 7 cut(s) 244, 307, 337, 376, 395, 510, 513
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 2 cut(s) 149, 179
Fsp4HI GCNGC 7 cut(s) 244, 307, 337, 376, 395, 510, 513
FspBI CTAG 2 cut(s) 108, 275
GluI GCNGC 7 cut(s) 244, 307, 337, 376, 395, 510, 513
HaeIII GGCC 9 cut(s) 147, 157, 218, 266, 309, 336, 440, 485, 509
HapII CCGG 2 cut(s) 54, 333
HgaI GACGC 1 cut(s) 5
Hin1II CATG 7 cut(s) 52, 115, 128, 200, 223, 352, 464
HpaII CCGG 2 cut(s) 54, 333
HphI GGTGA 2 cut(s) 52, 219
Hpy188I TCNGA 3 cut(s) 72, 174, 271
Hpy188III TCNNGA 1 cut(s) 197
Hpy99I CGWCG 2 cut(s) 68, 139
HpyCH4III ACNGT 3 cut(s) 64, 209, 505
HpyCH4IV ACGT 2 cut(s) 78, 302
HpyCH4V TGCA 6 cut(s) 124, 128, 315, 375, 387, 464
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 306, 312, 321, 384, 403
HpySE526I ACGT 2 cut(s) 78, 302
Hsp92II CATG 7 cut(s) 52, 115, 128, 200, 223, 352, 464
Kzo9I GATC 2 cut(s) 57, 67
LmnI GCTCC 2 cut(s) 91, 321
Lsp1109I GCAGC 4 cut(s) 255, 387, 406, 499
LweI GCATC 1 cut(s) 137
MaeI CTAG 2 cut(s) 108, 275
MaeII ACGT 2 cut(s) 78, 302
MaeIII GTNAC 1 cut(s) 225
MalI GATC 2 cut(s) 59, 69
MbiI CCGCTC 1 cut(s) 287
MboI GATC 2 cut(s) 57, 67
MboII GAAGA 3 cut(s) 95, 267, 457
MhlI GDGCHC 2 cut(s) 149, 179
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 1 cut(s) 163
MluNI TGGCCA 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 9 cut(s) 30, 133, 277, 305, 320, 353, 445, 451, 496
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 130
MscI TGGCCA 1 cut(s) 218
MseI TTAA 2 cut(s) 162, 517
Msp20I TGGCCA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 54, 333
MspR9I CCNGG 3 cut(s) 55, 89, 380
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 89, 380
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 6 cut(s) 183, 306, 312, 321, 384, 403
NciI CCSGG 1 cut(s) 55
NdeII GATC 2 cut(s) 57, 67
NlaIII CATG 7 cut(s) 52, 115, 128, 200, 223, 352, 464
NlaIV GGNNCC 2 cut(s) 93, 147
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 130
NspI RCATGY 2 cut(s) 128, 352
PaeI GCATGC 1 cut(s) 128
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 485
PciI ACATGT 1 cut(s) 348
PctI GAATGC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 505
PkrI GCNGC 7 cut(s) 245, 308, 338, 377, 396, 511, 514
PmaCI CACGTG 1 cut(s) 303
PmlI CACGTG 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 303
PscI ACATGT 1 cut(s) 348
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 87, 378
PspCI CACGTG 1 cut(s) 303
PspGI CCWGG 2 cut(s) 87, 378
PspN4I GGNNCC 2 cut(s) 93, 147
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 4 cut(s) 145, 146, 155, 454
PsyI GACNNNGTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 162, 517
SatI GCNGC 7 cut(s) 244, 307, 337, 376, 395, 510, 513
Sau3AI GATC 2 cut(s) 57, 67
Sau96I GGNCC 4 cut(s) 145, 146, 155, 454
ScrFI CCNGG 3 cut(s) 55, 89, 380
SduI GDGCHC 2 cut(s) 149, 179
SetI ASST 8 cut(s) 81, 144, 188, 276, 305, 326, 345, 370
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 1 cut(s) 454
SphI GCATGC 1 cut(s) 128
Sse9I AATT 1 cut(s) 163
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 6 cut(s) 285, 298, 306, 337, 457, 510
SspMI CTAG 2 cut(s) 108, 275
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 53, 87, 378
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 3 cut(s) 64, 209, 505
TaiI ACGT 2 cut(s) 81, 305
TaqI TCGA 5 cut(s) 66, 134, 279, 443, 469
TaqII GACCGA 1 cut(s) 487
TasI AATT 1 cut(s) 163
TauI GCSGC 3 cut(s) 309, 339, 512
Tru1I TTAA 2 cut(s) 162, 517
Tru9I TTAA 2 cut(s) 162, 517
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 4 cut(s) 243, 375, 394, 512
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 213, 416
TspGWI ACGGA 2 cut(s) 152, 334
Tth111I GACNNNGTC 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 454
XceI RCATGY 2 cut(s) 128, 352
XspI CTAG 2 cut(s) 108, 275
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.