Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003160

Physical Location & Seq

Genomic Coordinates Reverse (-)

31849242 .. 31851119

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATCAAGAGAGTTTTAATGAAAAGTCACGGTACTGTTCACTTTAACGAAAAATCACATTTTTACACTAAAAATTTCATTAATTTTCTAAATAAAATAATTAAAGTGCTGGCGTGGATTTTCCATTTATGCAAACAACAACTCCCTCTCACAAGTCACTGGCCACAGGTCACTAGACTCCACAACCCTCTATCTCTCTTAAGCATTGCAATAACAACGGTCCAGATTCACTCCTCAGTTTCTGGCTCTTCTTTATCTTCCCCACCTTCACTTCCCCCGACTCCTCTCTGTCTCTCCGTCTTGCTTCTCTTTCTCTCTCTCTCTCTAGATTTTAGAGAGAATTGTAGTTGTAGTCTTTTTGCGTTGCTAGAAATCTCAGCAGAGAAGAGAAAAATGTCGTTGGGGAAGAGACCAAGGCCTCCGATGAAGAGGACCACAAGCATGTCAGAAATCACCTTTGATCCGAACACCATCAGTACTGAGGCACCTCACTCTCAACCGTCCGATCCCAACAACCCTTATCAGCCTCTTGCCTTATGGGGCGGTGGTGGTAGTGGTGGAGGTGGTCGTGGTGGTGGGCTTGATGGGTTGGATCAACGGCTCATGATGAAGTTGCCCTCACCATCATCAGCATCGCCAAGAAACCAGAAAAGAAATTCTGCTGATTTTGGAGAAACTGCCCACTTCTTGAAGGCTTGTGGTCTCTGCAAACGCCGCCTTATTCCCGGCCGCGATATTTACATGTACAGAGGTGACACAGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATAAACCTTGATGAGAGGAAAGACAAGTGTTCTTCCACCGCCGGACACCAAGTCTCCGCCAAAGGTGAAACCGTGTCTGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

293

Amino Acids

32.19

Weight (kDa)

9.63

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22160 AT1G78020
fragaria_vesca	FvH4_1g21440 FvH4_5g37970 FvH4_5g37970
malus_domestica	MD00G1073400.v1.1 MD01G1025300.v1.1 MD08G1178500.v1.1 MD15G1363900.v1.1
prunus_persica	Prupe.1G512200_v2.0.a1 Prupe.6G180700_v2.0.a1
pyrus_communis	pycom01g05330 pycom08g15280 pycom15g29830 pycom15g32690
rosa_chinensis	RchiOBHm_Chr2g0115261 RchiOBHm_Chr7g0239911
rosa_laevigata	RLG00000000719 RLG00000018170
rosa_multiflora	Rmu_co8373487.1_g000001 Rmu_sc0000540.1_g000047 Rmu_sc0001626.1_g000049 Rmu_sc0002784.1_g000062
rosa_roxburghii	Rroxscaffold_2G00130800 Rroxscaffold_3G00220690
rosa_rugosa	Rorug02G0195400 Rorug07G0331100
rosa_samantha	Rh2AG253300 Rh2BG263500 Rh2CG258200 Rh2DG261500 Rh7AG484500 Rh7BG457700 Rh7CG502000 Rh7DG470200
rosa_wichuraiana	Rw2G019800 Rw7G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccII	CGCG	1 cut(s)	732
AciI	CCGC	5 cut(s)	543, 715, 730, 831, 849
AclWI	GGATC	3 cut(s)	455, 500, 600
AcoI	YGGCCR	2 cut(s)	161, 727
AcsI	RAATTY	2 cut(s)	73, 655
AfaI	GTAC	3 cut(s)	34, 478, 746
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	1 cut(s)	691
AhdI	GACNNNNNGTC	1 cut(s)	842
AluBI	AGCT	1 cut(s)	761
AluI	AGCT	1 cut(s)	761
Alw26I	GTCTC	4 cut(s)	296, 403, 707, 850
AlwI	GGATC	3 cut(s)	455, 500, 600
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	3 cut(s)	161, 416, 727
ApeKI	GCWGC	1 cut(s)	784
ApoI	RAATTY	2 cut(s)	73, 655
AseI	ATTAAT	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	220, 432
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	4 cut(s)	445, 612, 764, 869
AvaII	GGWCC	2 cut(s)	220, 432
BalI	TGGCCA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	3 cut(s)	479, 578, 631
BceAI	ACGGC	1 cut(s)	614
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	4 cut(s)	296, 403, 707, 850
BfaI	CTAG	4 cut(s)	174, 326, 368, 773
BfmI	CTRYAG	1 cut(s)	766
BfrI	CTTAAG	1 cut(s)	199
BisI	GCNGC	3 cut(s)	715, 730, 785
BlsI	GCNGC	3 cut(s)	716, 731, 786
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	2 cut(s)	220, 432
BmeRI	GACNNNNNGTC	1 cut(s)	842
BmgT120I	GGNCC	2 cut(s)	220, 432
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	726
BsaI	GGTCTC	2 cut(s)	403, 707
BsaJI	CCNNGG	1 cut(s)	413
BsaXI	ACNNNNNCTCC	4 cut(s)	126, 156, 830, 860
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	249, 390, 471
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	2 cut(s)	223, 273
BseX3I	CGGCCG	1 cut(s)	727
BseXI	GCAGC	1 cut(s)	796
Bsh1236I	CGCG	1 cut(s)	732
Bsh1285I	CGRYCG	1 cut(s)	730
BshFI	GGCC	3 cut(s)	163, 418, 729
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	730
BsiSI	CCGG	3 cut(s)	726, 781, 834
BsmAI	GTCTC	4 cut(s)	296, 403, 707, 850
BsnI	GGCC	3 cut(s)	163, 418, 729
Bso31I	GGTCTC	2 cut(s)	403, 707
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	4 cut(s)	3, 460, 505, 592
BspACI	CCGC	5 cut(s)	543, 715, 730, 831, 849
BspANI	GGCC	3 cut(s)	163, 418, 729
BspCNI	CTCAG	3 cut(s)	248, 389, 472
BspFNI	CGCG	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	486
BspMAI	CTGCAG	1 cut(s)	770
BspPI	GGATC	3 cut(s)	455, 500, 600
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	199
BspTNI	GGTCTC	2 cut(s)	403, 707
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	780
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	4 cut(s)	3, 460, 505, 592
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	5 cut(s)	32, 37, 220, 501, 865
Bst6I	CTCTTC	4 cut(s)	253, 380, 401, 422
BstAFI	CTTAAG	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	2 cut(s)	111, 782
BstDEI	CTNAG	3 cut(s)	235, 376, 480
BstFNI	CGCG	1 cut(s)	732
BstKTI	GATC	4 cut(s)	6, 463, 508, 595
BstMAI	GTCTC	4 cut(s)	296, 403, 707, 850
BstMBI	GATC	4 cut(s)	3, 460, 505, 592
BstMCI	CGRYCG	1 cut(s)	730
BstMWI	GCNNNNNNNGC	1 cut(s)	714
BstNSI	RCATGY	2 cut(s)	445, 745
BstSCI	CCNGG	1 cut(s)	724
BstSFI	CTRYAG	1 cut(s)	766
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	1 cut(s)	796
BstZI	CGGCCG	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	163, 418, 729
BtgZI	GCGATG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	111, 782
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	220, 432
Csp6I	GTAC	3 cut(s)	33, 477, 745
CviAII	CATG	3 cut(s)	442, 604, 742
CviJI	RGCY	9 cut(s)	163, 246, 418, 526, 580, 601, 695, 729, 761
CviKI_1	RGCY	9 cut(s)	163, 246, 418, 526, 580, 601, 695, 729, 761
CviQI	GTAC	3 cut(s)	33, 477, 745
DdeI	CTNAG	3 cut(s)	235, 376, 480
DpnI	GATC	4 cut(s)	5, 462, 507, 594
DpnII	GATC	4 cut(s)	3, 460, 505, 592
DriI	GACNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	2 cut(s)	161, 727
EagI	CGGCCG	1 cut(s)	727
Eam1104I	CTCTTC	4 cut(s)	253, 380, 401, 422
Eam1105I	GACNNNNNGTC	1 cut(s)	842
EarI	CTCTTC	4 cut(s)	253, 380, 401, 422
EciI	GGCGGA	1 cut(s)	838
EclXI	CGGCCG	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	418
Eco31I	GGTCTC	2 cut(s)	403, 707
Eco47I	GGWCC	2 cut(s)	220, 432
Eco52I	CGGCCG	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	3 cut(s)	445, 607, 745
FaiI	YATR	5 cut(s)	130, 443, 538, 605, 743
FatI	CATG	3 cut(s)	441, 603, 741
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	715, 730, 785
Fsp4HI	GCNGC	3 cut(s)	715, 730, 785
FspBI	CTAG	4 cut(s)	174, 326, 368, 773
GluI	GCNGC	3 cut(s)	715, 730, 785
HaeIII	GGCC	3 cut(s)	163, 418, 729
HapII	CCGG	3 cut(s)	726, 781, 834
Hin1II	CATG	3 cut(s)	445, 607, 745
HinfI	GANTC	3 cut(s)	177, 226, 280
HpaII	CCGG	3 cut(s)	726, 781, 834
HphI	GGTGA	4 cut(s)	445, 612, 764, 869
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	4 cut(s)	423, 448, 465, 505
Hpy188III	TCNNGA	6 cut(s)	7, 223, 326, 604, 688, 773
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	276, 685
HpyCH4III	ACNGT	5 cut(s)	32, 37, 220, 501, 865
HpyCH4V	TGCA	4 cut(s)	132, 209, 708, 768
HpyF10VI	GCNNNNNNNGC	1 cut(s)	714
HpyF3I	CTNAG	3 cut(s)	235, 376, 480
Hsp92II	CATG	3 cut(s)	445, 607, 745
KroI	GCCGGC	1 cut(s)	780
KroNI	GCCGGC	1 cut(s)	782
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 460, 505, 592
LguI	GCTCTTC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	95, 145, 152, 228, 236, 659, 739, 794, 847
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	4 cut(s)	174, 326, 368, 773
MaeIII	GTNAC	4 cut(s)	26, 155, 169, 752
MalI	GATC	4 cut(s)	5, 462, 507, 594
MboI	GATC	4 cut(s)	3, 460, 505, 592
MboII	GAAGA	6 cut(s)	240, 249, 397, 418, 439, 816
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	5 cut(s)	73, 82, 99, 340, 655
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	171, 274
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	163
MroNI	GCCGGC	1 cut(s)	780
MscI	TGGCCA	1 cut(s)	163
MseI	TTAA	5 cut(s)	17, 45, 81, 102, 200
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	163
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	3 cut(s)	726, 781, 834
MspR9I	CCNGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	1 cut(s)	714
NaeI	GCCGGC	1 cut(s)	782
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	4 cut(s)	3, 460, 505, 592
NgoMIV	GCCGGC	1 cut(s)	780
NlaIII	CATG	3 cut(s)	445, 607, 745
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	4 cut(s)	26, 155, 169, 752
NspI	RCATGY	2 cut(s)	445, 745
PagI	TCATGA	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	418
PciI	ACATGT	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	782
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	716, 731, 786
PleI	GAGTC	2 cut(s)	171, 274
PpsI	GAGTC	2 cut(s)	171, 274
PscI	ACATGT	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	2 cut(s)	220, 432
PstI	CTGCAG	1 cut(s)	770
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	34, 478, 746
RsaNI	GTAC	3 cut(s)	33, 477, 745
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	5 cut(s)	17, 45, 81, 102, 200
SatI	GCNGC	3 cut(s)	715, 730, 785
Sau3AI	GATC	4 cut(s)	3, 460, 505, 592
Sau96I	GGNCC	2 cut(s)	220, 432
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	2 cut(s)	171, 274
ScrFI	CCNGG	1 cut(s)	726
SetI	ASST	9 cut(s)	171, 268, 458, 490, 565, 754, 763, 801, 859
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	766
SinI	GGWCC	2 cut(s)	220, 432
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	73, 82, 99, 340, 655
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	5 cut(s)	543, 715, 730, 831, 849
SspMI	CTAG	4 cut(s)	174, 326, 368, 773
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	5 cut(s)	32, 37, 220, 501, 865
TasI	AATT	5 cut(s)	73, 82, 99, 340, 655
TatI	WGTACW	2 cut(s)	476, 744
TauI	GCSGC	2 cut(s)	717, 732
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	5 cut(s)	17, 45, 81, 102, 200
Tru9I	TTAA	5 cut(s)	17, 45, 81, 102, 200
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	4 cut(s)	26, 155, 169, 752
TseI	GCWGC	1 cut(s)	784
Tsp45I	GTSAC	4 cut(s)	26, 155, 169, 752
TspDTI	ATGAA	4 cut(s)	35, 67, 440, 623
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	164
Vha464I	CTTAAG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	220, 432
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	2 cut(s)	73, 655
XbaI	TCTAGA	2 cut(s)	325, 772
XceI	RCATGY	2 cut(s)	445, 745
XspI	CTAG	4 cut(s)	174, 326, 368, 773
ZrmI	AGTACT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.