Rh7BG457700

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003160
Physical Location & Seq
Forward (+)
54199519 .. 54203105
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG457700.1

Sequence Viewer

Length: 432 bp
ATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAGATCACCTTTGATCTGAACACTGAAGCTCAACCTCAGCCCTCAGATCCCCACAACCCCTTCAGCCCTCTGGCGTTTGATGGCCTTATGGTGAAGATGGCCTCCTCATCACCCTCACCTAGAAACCACAGAAGGAACTCTGCTGATTTCGTTGAGACTCCTCACTTCTTGAGGGCTTGCGGTCTCTGCAAACGCCGCCTTGTTCCTGGCCGCGATATTTACATGTATAGAGGTGATACTGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATGACCCTTGATGAGAGGAATGATAAGTGTTCATCTTCGGCTTCCACCGCCGTCGTCGCCGGACACCATGTCTCTTCCAAAGGGGAAACTATGGCCGCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

143

Amino Acids

15.89

Weight (kDa)

9.17

Isoelectric Point (pI)

78.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 66 - 115 6.8e-27 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 5 cut(s) 234, 250, 265, 375, 423
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 2 cut(s) 262, 420
AcuI CTGAAG 2 cut(s) 99, 100
AflIII ACRYGT 1 cut(s) 276
AhdI GACNNNNNGTC 1 cut(s) 395
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 4 cut(s) 10, 203, 242, 403
AlwI GGATC 1 cut(s) 95
AoxI GGCC 5 cut(s) 23, 136, 153, 262, 420
ApeKI GCWGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 5 cut(s) 52, 156, 157, 162, 299
AvaII GGWCC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 128, 145
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 4 cut(s) 10, 203, 242, 403
BfaI CTAG 2 cut(s) 174, 308
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 4 cut(s) 250, 265, 320, 423
BlsI GCNGC 4 cut(s) 251, 266, 321, 424
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 244
BsaI GGTCTC 2 cut(s) 10, 242
BsaJI CCNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 315
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 104, 111
BseRI GAGGAG 2 cut(s) 148, 204
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 5 cut(s) 25, 138, 155, 264, 422
BsiSI CCGG 2 cut(s) 316, 387
BsmAI GTCTC 4 cut(s) 10, 203, 242, 403
BsnI GGCC 5 cut(s) 25, 138, 155, 264, 422
Bso31I GGTCTC 2 cut(s) 10, 242
Bsp143I GATC 3 cut(s) 57, 67, 100
BspACI CCGC 5 cut(s) 234, 250, 265, 375, 423
BspANI GGCC 5 cut(s) 25, 138, 155, 264, 422
BspCNI CTCAG 2 cut(s) 103, 110
BspFNI CGCG 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 305
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 2 cut(s) 10, 242
BsrFI RCCGGY 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 57, 67, 100
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 261
Bst6I CTCTTC 3 cut(s) 8, 29, 406
BstC8I GCNNGC 2 cut(s) 232, 317
BstDEI CTNAG 2 cut(s) 90, 97
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 3 cut(s) 60, 70, 103
BstMAI GTCTC 4 cut(s) 10, 203, 242, 403
BstMBI GATC 3 cut(s) 57, 67, 100
BstMWI GCNNNNNNNGC 4 cut(s) 240, 249, 374, 383
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 2 cut(s) 52, 280
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 301
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 5 cut(s) 25, 138, 155, 264, 422
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 232, 317
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 39
CviAII CATG 3 cut(s) 49, 277, 395
DdeI CTNAG 2 cut(s) 90, 97
DpnI GATC 3 cut(s) 59, 69, 102
DpnII GATC 3 cut(s) 57, 67, 100
DriI GACNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 2 cut(s) 262, 420
Eam1104I CTCTTC 3 cut(s) 8, 29, 406
Eam1105I GACNNNNNGTC 1 cut(s) 395
EarI CTCTTC 3 cut(s) 8, 29, 406
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 2 cut(s) 10, 242
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 99, 100
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 52, 280, 398
FaiI YATR 6 cut(s) 50, 143, 278, 282, 396, 419
FatI CATG 3 cut(s) 48, 276, 394
Fnu4HI GCNGC 4 cut(s) 250, 265, 320, 423
Fsp4HI GCNGC 4 cut(s) 250, 265, 320, 423
FspBI CTAG 2 cut(s) 174, 308
GluI GCNGC 4 cut(s) 250, 265, 320, 423
HaeIII GGCC 5 cut(s) 25, 138, 155, 264, 422
HapII CCGG 2 cut(s) 316, 387
Hin1II CATG 3 cut(s) 52, 280, 398
HinfI GANTC 1 cut(s) 211
HpaII CCGG 2 cut(s) 316, 387
HphI GGTGA 5 cut(s) 52, 156, 157, 162, 299
Hpy188I TCNGA 3 cut(s) 55, 72, 100
Hpy188III TCNNGA 2 cut(s) 223, 308
Hpy99I CGWCG 2 cut(s) 383, 386
HpyAV CCTTC 2 cut(s) 124, 180
HpyCH4V TGCA 2 cut(s) 243, 303
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 249, 374, 383
HpyF3I CTNAG 2 cut(s) 90, 97
Hsp92II CATG 3 cut(s) 52, 280, 398
KroI GCCGGC 1 cut(s) 315
KroNI GCCGGC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 57, 67, 100
LpnPI CCDG 5 cut(s) 110, 246, 273, 329, 400
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 2 cut(s) 174, 308
MalI GATC 3 cut(s) 59, 69, 102
MboI GATC 3 cut(s) 57, 67, 100
MboII GAAGA 5 cut(s) 25, 46, 160, 354, 393
MflI RGATCY 1 cut(s) 100
MlyI GAGTC 1 cut(s) 205
MroNI GCCGGC 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 316, 387
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 240, 249, 374, 383
NaeI GCCGGC 1 cut(s) 317
NdeII GATC 3 cut(s) 57, 67, 100
NgoMIV GCCGGC 1 cut(s) 315
NlaIII CATG 3 cut(s) 52, 280, 398
NspI RCATGY 2 cut(s) 52, 280
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 317
PkrI GCNGC 4 cut(s) 251, 266, 321, 424
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspPI GGNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 4 cut(s) 250, 265, 320, 423
Sau3AI GATC 3 cut(s) 57, 67, 100
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 261
SetI ASST 5 cut(s) 65, 85, 91, 175, 289
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 5 cut(s) 234, 250, 265, 375, 423
SspMI CTAG 2 cut(s) 174, 308
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 20
TauI GCSGC 3 cut(s) 252, 267, 425
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 47, 348
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 39
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 52, 280
XspI CTAG 2 cut(s) 174, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.