FvH4_1g21440

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003160
Physical Location & Seq
Forward (+)
13376338 .. 13378089
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21440.t1

Sequence Viewer

Length: 525 bp
ATGTTGTTAGGGAAGCGTCCCCGCCCTCCGATTCGGAGAACGACAAGCATGACCGGGATAACCGTCGATCAGAGCAACGTGGAAGACCAGGAGCCGACTGAAAACCCTAGCATGATGATGGATGTACATGCACCATCGATGGTGGTGGTCCCTGATGGGCCTTTGAATCATCTTCATAGCCCTAGCAGCTTGGGGTACCATGAACAGCACCGTTTCTTGGCCATGTTGTCACCCAGAACCAACAGCAGCAACCACCGGAGAAACTCGGACTCCGACCTAGTCGAAACCGCTCACTTCCTCCGCACGTGCGGCCTCTGCAAACGGAGCTTGGCTTCCGGCCGCGACCTCTATATGTATAGGGGAGACACAGCTTTTTGCAGCCTAGAATGCAGAGAGCAGCAGATGAAGCAAGACGAGAGAGTAGAGAAGTGTAAGGGGGTGTCCTCGAAGAAAGATGACCGCCATGCAACAACTCGATCGAGCTCCAAGGCCTCTGGTAAAGCCCAGACTGTGGCCGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

175

Amino Acids

19.4

Weight (kDa)

9.08

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 90 - 140 5.7e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 1 cut(s) 342
AciI CCGC 7 cut(s) 22, 288, 301, 309, 340, 460, 516
AcoI YGGCCR 3 cut(s) 219, 337, 513
AcvI CACGTG 1 cut(s) 306
AfaI GTAC 2 cut(s) 126, 197
AfiI CCNNNNNNNGG 2 cut(s) 217, 511
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 5 cut(s) 189, 327, 371, 483, 521
AluI AGCT 5 cut(s) 189, 327, 371, 483, 521
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 6 cut(s) 158, 219, 310, 337, 489, 513
ApeKI GCWGC 5 cut(s) 186, 246, 378, 397, 518
Asp718I GGTACC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 148, 158
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 485
BbrPI CACGTG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 485
BbvI GCAGC 4 cut(s) 198, 258, 390, 409
BccI CCATC 4 cut(s) 112, 133, 142, 149
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 4 cut(s) 108, 183, 278, 383
BisI GCNGC 8 cut(s) 187, 247, 310, 340, 379, 398, 516, 519
BlsI GCNGC 8 cut(s) 188, 248, 311, 341, 380, 399, 517, 520
Bme1390I CCNGG 2 cut(s) 55, 89
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 148, 158
BmiI GGNNCC 3 cut(s) 93, 150, 197
BmrFI CCNGG 2 cut(s) 55, 89
BpiI GAAGAC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 55
Bsa29I ATCGAT 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 511
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 217, 511
BseX3I CGGCCG 1 cut(s) 337
BseXI GCAGC 4 cut(s) 198, 258, 390, 409
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 2 cut(s) 340, 479
BshFI GGCC 6 cut(s) 160, 221, 312, 339, 491, 515
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 137
BsiEI CGRYCG 2 cut(s) 340, 479
BsiHKAI GWGCWC 1 cut(s) 485
BsiSI CCGG 3 cut(s) 54, 256, 336
BslFI GGGAC 2 cut(s) 3, 134
BslI CCNNNNNNNGG 2 cut(s) 217, 511
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 3, 134
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 6 cut(s) 160, 221, 312, 339, 491, 515
Bsp1286I GDGCHC 1 cut(s) 485
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 67, 476
BspACI CCGC 7 cut(s) 22, 288, 301, 309, 340, 460, 516
BspANI GGCC 6 cut(s) 160, 221, 312, 339, 491, 515
BspDI ATCGAT 1 cut(s) 137
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 93, 150, 197
BspT107I GGYRCC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 2 cut(s) 67, 476
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 64, 212, 511
BstAUI TGTACA 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 306
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 2 cut(s) 70, 479
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 2 cut(s) 67, 476
BstMCI CGRYCG 2 cut(s) 340, 479
BstMWI GCNNNNNNNGC 6 cut(s) 186, 309, 315, 324, 387, 406
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 53, 87
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 4 cut(s) 198, 258, 390, 409
BstV2I GAAGAC 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 6 cut(s) 160, 221, 312, 339, 491, 515
BsuTUI ATCGAT 1 cut(s) 137
BtsCI GGATG 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 148, 158
ClaI ATCGAT 1 cut(s) 137
CseI GACGC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 125, 196
CviAII CATG 6 cut(s) 49, 112, 128, 200, 223, 464
CviQI GTAC 2 cut(s) 125, 196
DpnI GATC 2 cut(s) 69, 478
DpnII GATC 2 cut(s) 67, 476
EaeI YGGCCR 3 cut(s) 219, 337, 513
EagI CGGCCG 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 483
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 483
Eco72I CACGTG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 6 cut(s) 52, 115, 131, 203, 226, 467
FaqI GGGAC 2 cut(s) 3, 134
FatI CATG 6 cut(s) 48, 111, 127, 199, 222, 463
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 8 cut(s) 187, 247, 310, 340, 379, 398, 516, 519
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 8 cut(s) 187, 247, 310, 340, 379, 398, 516, 519
FspBI CTAG 4 cut(s) 108, 183, 278, 383
GluI GCNGC 8 cut(s) 187, 247, 310, 340, 379, 398, 516, 519
HaeIII GGCC 6 cut(s) 160, 221, 312, 339, 491, 515
HapII CCGG 3 cut(s) 54, 256, 336
HgaI GACGC 1 cut(s) 5
Hin1II CATG 6 cut(s) 52, 115, 131, 203, 226, 467
HinfI GANTC 3 cut(s) 31, 166, 269
HpaII CCGG 3 cut(s) 54, 256, 336
HphI GGTGA 1 cut(s) 222
Hpy188I TCNGA 5 cut(s) 30, 36, 72, 268, 274
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 3 cut(s) 64, 212, 511
HpyCH4IV ACGT 2 cut(s) 78, 305
HpyCH4V TGCA 5 cut(s) 131, 318, 378, 390, 467
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 309, 315, 324, 387, 406
HpySE526I ACGT 2 cut(s) 78, 305
Hsp92II CATG 6 cut(s) 52, 115, 131, 203, 226, 467
KpnI GGTACC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 67, 476
LmnI GCTCC 3 cut(s) 91, 324, 488
LpnPI CCDG 9 cut(s) 67, 74, 101, 165, 247, 269, 349, 480, 518
Lsp1109I GCAGC 4 cut(s) 198, 258, 390, 409
MaeI CTAG 4 cut(s) 108, 183, 278, 383
MaeII ACGT 2 cut(s) 78, 305
MaeIII GTNAC 1 cut(s) 228
MalI GATC 2 cut(s) 69, 478
MbiI CCGCTC 1 cut(s) 290
MboI GATC 2 cut(s) 67, 476
MboII GAAGA 3 cut(s) 95, 164, 460
MhlI GDGCHC 1 cut(s) 485
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 6 cut(s) 36, 308, 323, 356, 454, 502
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 1 cut(s) 523
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 3 cut(s) 54, 256, 336
MspR9I CCNGG 2 cut(s) 55, 89
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 6 cut(s) 186, 309, 315, 324, 387, 406
NciI CCSGG 1 cut(s) 55
NdeII GATC 2 cut(s) 67, 476
NlaIII CATG 6 cut(s) 52, 115, 131, 203, 226, 467
NlaIV GGNNCC 3 cut(s) 93, 150, 197
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 1 cut(s) 131
PceI AGGCCT 1 cut(s) 491
PctI GAATGC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 31, 166
PflFI GACNNNGTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 8 cut(s) 188, 248, 311, 341, 380, 399, 517, 520
Ple19I CGATCG 1 cut(s) 479
PleI GAGTC 1 cut(s) 263
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 93, 150, 197
PspPI GGNCC 2 cut(s) 148, 158
PsyI GACNNNGTC 1 cut(s) 278
PvuI CGATCG 1 cut(s) 479
RsaI GTAC 2 cut(s) 126, 197
RsaNI GTAC 2 cut(s) 125, 196
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 523
SatI GCNGC 8 cut(s) 187, 247, 310, 340, 379, 398, 516, 519
Sau3AI GATC 2 cut(s) 67, 476
Sau96I GGNCC 2 cut(s) 148, 158
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 55, 89
SduI GDGCHC 1 cut(s) 485
SetI ASST 9 cut(s) 81, 191, 279, 308, 329, 348, 373, 485, 523
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 7 cut(s) 22, 288, 301, 309, 340, 460, 516
SspMI CTAG 4 cut(s) 108, 183, 278, 383
SstI GAGCTC 1 cut(s) 485
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 2 cut(s) 53, 87
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 3 cut(s) 64, 212, 511
TaiI ACGT 2 cut(s) 81, 308
TaqI TCGA 6 cut(s) 66, 137, 282, 446, 475, 479
TatI WGTACW 1 cut(s) 124
TauI GCSGC 3 cut(s) 312, 342, 518
TfiI GAWTC 2 cut(s) 31, 166
Tru1I TTAA 1 cut(s) 523
Tru9I TTAA 1 cut(s) 523
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 5 cut(s) 186, 246, 378, 397, 518
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 3 cut(s) 164, 216, 419
TspGWI ACGGA 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 148
XceI RCATGY 1 cut(s) 131
XspI CTAG 4 cut(s) 108, 183, 278, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.