Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003160

Physical Location & Seq

Genomic Coordinates Reverse (-)

36260777 .. 36261958

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTTGTATGCTAATCTTCCTGCTGAGATTGTTGATAAAATTGTTGTTATTCCTATCTCTGTTAGTAATTTGCCTGATCGCCTCATATGGGGTGGCACTTCATCGGGTATCTTCTCTGTGAAGTCTACTTACAAGTTTCTCTGTGATGGTGAAGATCACCAAAATCAGTTATGGAACAAGGTTTGGTCCGTCCCTATCCCTCCTAAGGTCAATATTTTTCTTTGGTCATTTGTCTCAAGCAAGCTCTTAACTAATGAGCAACGTTTTAAAAGAAGACTTGCGAGCAGTCCTATTTGTCAATTCTGTGCTAATGCTGATGAAACTATGTTGCATCTGTTTCGGGACTGCATTAATACTAAACAGGTATGGGGCTCATTTGCTATACCTTCAAATATGTTAGCCACCTTCACTTTAAATTGGAAGGATTGGATTCTGGCCAATCTGTTACAAAATGATTATTGCATGAGGAATTTGAGATGGAATTTATTCTTCAATTATTGTTGCTGGTTCTTGTGGAAATGGAGATGTAAATCTATTTTTGATTCTACCTTCCTCTATCCCTACAATCCTTCTGAAGTTGTTTTTAGCTATGTTGAGGAATGGACTAGGGCCACTGCAAAGCCTAACAATGTGCAGAACAAGGTGGTTGAAATGCTTTCTTGGTTCAAGCCTATTGTTGGTTTTCACAAACTTAATGTTGATGGTTCAAGAACGAGCAATGGTGCTATTGGAGCTGGGGGGGGCCTTATAAGGGACGATGCTGGCTGTTGGTGTGGTGGATTTATGATTAGTATTGGTTTTGGTGATGTCCTCCAAGCTGAGGCATGGGGCCTCTTCCATGAGCTTCAACTGGCTCTGAGCCTTAACAATATGAAGTTGGAAGTGGAATCTGACTCTGCTGTGTTGGTAAGTCTAATGAGTAGTCTGGATATTGAGCTGCATCCTCTGGGAACCTTGATTATAAATTGTAGGAAGATTTTGAATGAGTTTGTGTCAGTTCAGTTAAGGCACGTTCATCGTGAGCGCAACAGGGTTGCTGATCTCTTGGCCAAGAATAGTACGCTTCATGCCAAAGGAATATGCATCCTCCACGACCCTCCAGCTTTGATCACTGAAGCTCTGTTAGATGACATTGTTGGAGCTCCTGTTGCTAGGAGTTTCAATGCCAGCGATGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

393

Amino Acids

44.43

Weight (kDa)

7.08

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	38 - 123	1.5e-20	zinc-binding in reverse transcriptase
RVT_3	PF13456	232 - 352	3.7e-24	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22160 AT1G78020
fragaria_vesca	FvH4_1g21440 FvH4_5g37970 FvH4_5g37970
malus_domestica	MD00G1073400.v1.1 MD01G1025300.v1.1 MD08G1178500.v1.1 MD15G1363900.v1.1
prunus_persica	Prupe.1G512200_v2.0.a1 Prupe.6G180700_v2.0.a1
pyrus_communis	pycom01g05330 pycom08g15280 pycom15g29830 pycom15g32690
rosa_chinensis	RchiOBHm_Chr2g0115261 RchiOBHm_Chr7g0239911
rosa_laevigata	RLG00000000719 RLG00000018170
rosa_multiflora	Rmu_co8373487.1_g000001 Rmu_sc0000540.1_g000047 Rmu_sc0001626.1_g000049 Rmu_sc0002784.1_g000062
rosa_roxburghii	Rroxscaffold_2G00130800 Rroxscaffold_3G00220690
rosa_rugosa	Rorug02G0195400 Rorug07G0331100
rosa_samantha	Rh2AG253300 Rh2BG263500 Rh2CG258200 Rh2DG261500 Rh7AG484500 Rh7BG457700 Rh7CG502000 Rh7DG470200
rosa_wichuraiana	Rw2G019800 Rw7G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	749, 962
AccI	GTMKAC	1 cut(s)	125
AclI	AACGTT	1 cut(s)	262
AcoI	YGGCCR	2 cut(s)	435, 1047
AcsI	RAATTY	2 cut(s)	469, 481
AcuI	CTGAAG	2 cut(s)	594, 1134
AfaI	GTAC	1 cut(s)	1060
AfiI	CCNNNNNNNGG	5 cut(s)	88, 205, 677, 751, 820
AgsI	TTSAA	8 cut(s)	390, 493, 650, 667, 708, 848, 982, 1162
AluBI	AGCT	9 cut(s)	244, 588, 734, 818, 844, 937, 1103, 1118, 1142
AluI	AGCT	9 cut(s)	244, 588, 734, 818, 844, 937, 1103, 1118, 1142
Alw21I	GWGCWC	1 cut(s)	1144
Alw26I	GTCTC	1 cut(s)	238
AoxI	GGCC	5 cut(s)	435, 609, 742, 829, 1047
ApeKI	GCWGC	1 cut(s)	937
ApoI	RAATTY	2 cut(s)	469, 481
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	1 cut(s)	1026
AspS9I	GGNCC	4 cut(s)	186, 609, 742, 829
AsuHPI	GGTGA	3 cut(s)	149, 161, 815
AvaII	GGWCC	1 cut(s)	186
AxyI	CCTNAGG	1 cut(s)	204
BalI	TGGCCA	2 cut(s)	437, 1049
BanII	GRGCYC	2 cut(s)	374, 1144
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	1144
BbvCI	CCTCAGC	1 cut(s)	819
BbvI	GCAGC	1 cut(s)	924
BccI	CCATC	3 cut(s)	140, 471, 695
BcgI	CGANNNNNNTGC	4 cut(s)	320, 354, 998, 1032
BclI	TGATCA	1 cut(s)	1107
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	3 cut(s)	606, 1152, 1180
BisI	GCNGC	1 cut(s)	938
BlsI	GCNGC	1 cut(s)	939
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	4 cut(s)	186, 609, 742, 829
BmiI	GGNNCC	3 cut(s)	743, 830, 952
BmsI	GCATC	5 cut(s)	340, 748, 949, 1092, 1162
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	1083
Bpu10I	CCTNAGC	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	1131, 1161
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 205, 677, 751, 820
Bse1I	ACTGG	1 cut(s)	855
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	529
BseGI	GGATG	2 cut(s)	940, 1083
BseJI	GATNNNNATC	1 cut(s)	529
BseLI	CCNNNNNNNGG	5 cut(s)	88, 205, 677, 751, 820
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	15, 810, 848
BseNI	ACTGG	1 cut(s)	855
BseXI	GCAGC	1 cut(s)	924
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	653
BshFI	GGCC	5 cut(s)	437, 611, 744, 831, 1049
BsiHKAI	GWGCWC	1 cut(s)	1144
BslFI	GGGAC	3 cut(s)	176, 356, 767
BslI	CCNNNNNNNGG	5 cut(s)	88, 205, 677, 751, 820
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	3 cut(s)	176, 356, 767
BsnI	GGCC	5 cut(s)	437, 611, 744, 831, 1049
Bsp1286I	GDGCHC	2 cut(s)	374, 1144
Bsp143I	GATC	4 cut(s)	76, 154, 1039, 1107
BspANI	GGCC	5 cut(s)	437, 611, 744, 831, 1049
BspCNI	CTCAG	3 cut(s)	16, 811, 849
BspLI	GGNNCC	3 cut(s)	743, 830, 952
BsrDI	GCAATG	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	855
BssMI	GATC	4 cut(s)	76, 154, 1039, 1107
Bst6I	CTCTTC	1 cut(s)	839
BstC8I	GCNNGC	5 cut(s)	242, 283, 763, 1168, 1177
BstDEI	CTNAG	4 cut(s)	24, 204, 819, 857
BstF5I	GGATG	2 cut(s)	940, 1083
BstHHI	GCGC	1 cut(s)	1026
BstKTI	GATC	4 cut(s)	79, 157, 1042, 1110
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	76, 154, 1039, 1107
BstMWI	GCNNNNNNNGC	4 cut(s)	731, 1148, 1172, 1176
BstV1I	GCAGC	1 cut(s)	924
BstV2I	GAAGAC	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	5 cut(s)	437, 611, 744, 831, 1049
BtsCI	GGATG	2 cut(s)	940, 1083
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	2 cut(s)	612, 1110
Cac8I	GCNNGC	5 cut(s)	242, 283, 763, 1168, 1177
CfoI	GCGC	1 cut(s)	1026
Cfr13I	GGNCC	4 cut(s)	186, 609, 742, 829
Csp6I	GTAC	1 cut(s)	1059
CviAII	CATG	4 cut(s)	463, 825, 839, 1067
CviQI	GTAC	1 cut(s)	1059
DdeI	CTNAG	4 cut(s)	24, 204, 819, 857
DpnI	GATC	4 cut(s)	78, 156, 1041, 1109
DpnII	GATC	4 cut(s)	76, 154, 1039, 1107
DraI	TTTAAA	2 cut(s)	268, 414
EaeI	YGGCCR	2 cut(s)	435, 1047
Eam1104I	CTCTTC	1 cut(s)	839
EarI	CTCTTC	1 cut(s)	839
Ecl136II	GAGCTC	1 cut(s)	1142
Eco24I	GRGCYC	2 cut(s)	374, 1144
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	1142
Eco57I	CTGAAG	2 cut(s)	594, 1134
Eco81I	CCTNAGG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	1142
EcoO109I	RGGNCCY	2 cut(s)	742, 829
EcoT22I	ATGCAT	1 cut(s)	1085
EcoT38I	GRGCYC	2 cut(s)	374, 1144
FaeI	CATG	4 cut(s)	466, 828, 842, 1070
FaqI	GGGAC	3 cut(s)	176, 356, 767
FatI	CATG	4 cut(s)	462, 824, 838, 1066
FauNDI	CATATG	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	1107
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	938
FokI	GGATG	2 cut(s)	927, 1070
FriOI	GRGCYC	2 cut(s)	374, 1144
Fsp4HI	GCNGC	1 cut(s)	938
FspBI	CTAG	3 cut(s)	606, 1152, 1180
GlaI	GCGC	1 cut(s)	1025
GluI	GCNGC	1 cut(s)	938
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	1083
HaeIII	GGCC	5 cut(s)	437, 611, 744, 831, 1049
HhaI	GCGC	1 cut(s)	1026
Hin1II	CATG	4 cut(s)	466, 828, 842, 1070
Hin6I	GCGC	1 cut(s)	1024
HinP1I	GCGC	1 cut(s)	1024
HinfI	GANTC	4 cut(s)	430, 542, 887, 893
HphI	GGTGA	3 cut(s)	149, 161, 815
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	574, 858, 892
Hpy188III	TCNNGA	4 cut(s)	341, 708, 926, 1019
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	5 cut(s)	396, 415, 415, 559, 579
HpyCH4IV	ACGT	2 cut(s)	262, 1011
HpyCH4V	TGCA	7 cut(s)	331, 348, 462, 617, 634, 940, 1083
HpyF10VI	GCNNNNNNNGC	4 cut(s)	731, 1148, 1172, 1176
HpyF3I	CTNAG	4 cut(s)	24, 204, 819, 857
HpySE526I	ACGT	2 cut(s)	262, 1011
Hsp92II	CATG	4 cut(s)	466, 828, 842, 1070
HspAI	GCGC	1 cut(s)	1024
Ksp22I	TGATCA	1 cut(s)	1107
Kzo9I	GATC	4 cut(s)	76, 154, 1039, 1107
LmnI	GCTCC	3 cut(s)	731, 1139, 1147
Lsp1109I	GCAGC	1 cut(s)	924
LweI	GCATC	5 cut(s)	340, 748, 949, 1092, 1162
MaeI	CTAG	3 cut(s)	606, 1152, 1180
MaeII	ACGT	2 cut(s)	262, 1011
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	4 cut(s)	78, 156, 1041, 1109
MboI	GATC	4 cut(s)	76, 154, 1039, 1107
MboII	GAAGA	7 cut(s)	8, 103, 164, 285, 481, 826, 985
MhlI	GDGCHC	2 cut(s)	374, 1144
MlsI	TGGCCA	2 cut(s)	437, 1049
MluCI	AATT	8 cut(s)	39, 67, 299, 415, 469, 481, 493, 964
MluNI	TGGCCA	2 cut(s)	437, 1049
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	2 cut(s)	858, 1117
Mox20I	TGGCCA	2 cut(s)	437, 1049
Mph1103I	ATGCAT	1 cut(s)	1085
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	2 cut(s)	437, 1049
MseI	TTAA	7 cut(s)	248, 267, 351, 413, 693, 864, 1004
Msp20I	TGGCCA	2 cut(s)	437, 1049
MwoI	GCNNNNNNNGC	4 cut(s)	731, 1148, 1172, 1176
NdeI	CATATG	1 cut(s)	86
NdeII	GATC	4 cut(s)	76, 154, 1039, 1107
NlaIII	CATG	4 cut(s)	466, 828, 842, 1070
NlaIV	GGNNCC	3 cut(s)	743, 830, 952
NsiI	ATGCAT	1 cut(s)	1085
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	430, 542, 887
PkrI	GCNGC	1 cut(s)	939
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	2 cut(s)	749, 962
Psp124BI	GAGCTC	1 cut(s)	1144
Psp1406I	AACGTT	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	734
PspN4I	GGNNCC	3 cut(s)	743, 830, 952
PspPI	GGNCC	4 cut(s)	186, 609, 742, 829
RsaI	GTAC	1 cut(s)	1060
RsaNI	GTAC	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	1144
SaqAI	TTAA	7 cut(s)	248, 267, 351, 413, 693, 864, 1004
SatI	GCNGC	1 cut(s)	938
Sau3AI	GATC	4 cut(s)	76, 154, 1039, 1107
Sau96I	GGNCC	4 cut(s)	186, 609, 742, 829
SchI	GAGTC	1 cut(s)	887
SduI	GDGCHC	2 cut(s)	374, 1144
SfaNI	GCATC	5 cut(s)	340, 748, 949, 1092, 1162
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	8 cut(s)	39, 67, 299, 415, 469, 481, 493, 964
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	3 cut(s)	606, 1152, 1180
SstI	GAGCTC	1 cut(s)	1144
TaiI	ACGT	2 cut(s)	265, 1014
TasI	AATT	8 cut(s)	39, 67, 299, 415, 469, 481, 493, 964
TfiI	GAWTC	3 cut(s)	430, 542, 887
Tru1I	TTAA	7 cut(s)	248, 267, 351, 413, 693, 864, 1004
Tru9I	TTAA	7 cut(s)	248, 267, 351, 413, 693, 864, 1004
TscAI	CASTG	2 cut(s)	619, 1117
TseI	GCWGC	1 cut(s)	937
TspDTI	ATGAA	5 cut(s)	90, 333, 887, 1004, 1055
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	619, 1117
VpaK11BI	GGWCC	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	2 cut(s)	469, 481
XmiI	GTMKAC	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	3 cut(s)	606, 1152, 1180
Zsp2I	ATGCAT	1 cut(s)	1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.