pycom01g05330

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0003160
Physical Location & Seq
Reverse (-)
5007459 .. 5008292
834 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05330.1

Sequence Viewer

Length: 261 bp
ATGATGAACATGAACAACAGCAGCTTAGGGTACCATGAAGAGCACCGTTTCTTGGCCATGTTGTCACCCAGAAACAACCACAGAAGAAGGAACACGGCTTCTCACGATGTTGTGGAGACCGCTCACTTCCTTCGCACGTGTGGCCTCTGCAAACGCCAGCTCGCTTCAGGCCGCGACATCTATATGTATAGGGGAGACACAGCGTTTTGTAGTCTAGAATGTAGAGAGCAACAGATGAAGCAGGATGAGAGAATAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

87

Amino Acids

10.16

Weight (kDa)

8.86

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 35 - 84 7.1e-27 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 122
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 120, 172
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 150
AcvI CACGTG 1 cut(s) 138
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 137
AluBI AGCT 2 cut(s) 24, 160
AluI AGCT 2 cut(s) 24, 160
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 110, 189
AoxI GGCC 3 cut(s) 54, 142, 169
ApeKI GCWGC 1 cut(s) 21
Asp718I GGTACC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 57
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 30
BbrPI CACGTG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 110, 189
BfaI CTAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 22, 172
BlsI GCNGC 2 cut(s) 23, 173
BmiI GGNNCC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 25
BsaAI YACGTR 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 3 cut(s) 56, 144, 171
BshNI GGYRCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 110, 189
BsnI GGCC 3 cut(s) 56, 144, 171
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 2 cut(s) 120, 172
BspANI GGCC 3 cut(s) 56, 144, 171
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 32
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 158, 162
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 174
BstMAI GTCTC 2 cut(s) 110, 189
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 56, 144, 171
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 158, 162
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 10, 35, 58
CviJI RGCY 6 cut(s) 24, 56, 98, 144, 160, 171
CviKI_1 RGCY 6 cut(s) 24, 56, 98, 144, 160, 171
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 150
Eco72I CACGTG 1 cut(s) 138
FaeI CATG 3 cut(s) 13, 38, 61
FaiI YATR 6 cut(s) 11, 36, 59, 183, 185, 189
FatI CATG 3 cut(s) 9, 34, 57
Fnu4HI GCNGC 2 cut(s) 22, 172
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 22, 172
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 22, 172
HaeIII GGCC 3 cut(s) 56, 144, 171
Hin1II CATG 3 cut(s) 13, 38, 61
HphI GGTGA 1 cut(s) 57
Hpy188III TCNNGA 2 cut(s) 104, 215
HpyAV CCTTC 2 cut(s) 81, 140
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 3 cut(s) 13, 38, 61
KpnI GGTACC 1 cut(s) 34
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 82, 153, 170, 227
Lsp1109I GCAGC 1 cut(s) 33
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 122
MboII GAAGA 2 cut(s) 50, 96
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 1 cut(s) 155
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 56
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 141
NlaIII CATG 3 cut(s) 13, 38, 61
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 33
PkrI GCNGC 2 cut(s) 23, 173
PmaCI CACGTG 1 cut(s) 138
PmlI CACGTG 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 138
PspCI CACGTG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 32
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 2 cut(s) 22, 172
SduI GDGCHC 1 cut(s) 45
SetI ASST 3 cut(s) 26, 140, 162
SmiMI CAYNNNNRTG 1 cut(s) 182
SsiI CCGC 2 cut(s) 120, 172
SspMI CTAG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 140
TauI GCSGC 1 cut(s) 174
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 4 cut(s) 20, 26, 51, 251
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.