AT1G78020

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003160
Physical Location & Seq
Forward (+)
29338530 .. 29339760
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78020.1

Sequence Viewer

Length: 489 bp
ATGTTGCTTGGAAAGAGACAACGACCACCGATCAACAGAACCACAAGTCTATCGGAGATAAAGTTCGATCTAAACCTTCCCAGCGAGTCAGAGCCATCAAATCAACAGAAGCCAACCGTTGCGAGCCCGTACGGTTCCAACGGTCAAGCTGTAACAGCAGCCGTTGATCAAAACCGTGGGTTCTTAGATCAACGGCTCTTATCCATGGTCACACCGAGAGGTAACCTGAGGAGACACTCAGGCGATTTCTCCGACGCTGGACATTTCTTGAGATCTTGCGCACTTTGTGAACGCCTTCTTGTTCCTGGCCGCGACATCTATATGTATAGGGGAGATAAGGCTTTTTGTAGCTCAGAGTGCAGGCAAGAGCAAATGGCACAAGATGAGAGGAAAGAGAAAGGTAAATCGGCGGCACCGGCGAAAGAACCGGCGGTGACAGCTCCCGCGAGAGCGAAACCCGGCAAAGGGAGAGCTGCAGCCGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

162

Amino Acids

17.69

Weight (kDa)

9.73

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 83 - 131 6.1e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 2 cut(s) 312, 446
AciI CCGC 5 cut(s) 310, 410, 431, 444, 480
AcoI YGGCCR 1 cut(s) 307
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 464, 465
AjnI CCWGG 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 149, 351, 440, 473
AluI AGCT 4 cut(s) 149, 351, 440, 473
Alw26I GTCTC 2 cut(s) 10, 226
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 3 cut(s) 158, 473, 476
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 1 cut(s) 445
AxyI CCTNAGG 1 cut(s) 227
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 170, 460
BccI CCATC 1 cut(s) 103
BceAI ACGGC 3 cut(s) 146, 209, 467
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 2 cut(s) 10, 226
BfmI CTRYAG 1 cut(s) 474
BglII AGATCT 1 cut(s) 272
BisI GCNGC 6 cut(s) 159, 310, 411, 474, 477, 480
BlsI GCNGC 6 cut(s) 160, 311, 412, 475, 478, 481
Bme1390I CCNGG 2 cut(s) 306, 459
BmiI GGNNCC 2 cut(s) 136, 414
BmrFI CCNGG 2 cut(s) 306, 459
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 175, 204
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 465
Bse118I RCCGGY 2 cut(s) 415, 427
Bse21I CCTNAGG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 175, 204
BseLI CCNNNNNNNGG 2 cut(s) 464, 465
BseMII CTCAG 3 cut(s) 218, 252, 366
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 170, 460
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 379
Bsh1236I CGCG 2 cut(s) 312, 446
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 1 cut(s) 412
BsiSI CCGG 3 cut(s) 416, 428, 459
BsiWI CGTACG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 464, 465
BsmAI GTCTC 2 cut(s) 10, 226
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 5 cut(s) 30, 67, 166, 187, 272
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 5 cut(s) 310, 410, 431, 444, 480
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 3 cut(s) 219, 251, 365
BspFNI CGCG 2 cut(s) 312, 446
BspLI GGNNCC 2 cut(s) 136, 414
BspMAI CTGCAG 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 412
BsrFI RCCGGY 2 cut(s) 415, 427
BssAI RCCGGY 2 cut(s) 415, 427
BssECI CCNNGG 2 cut(s) 175, 204
BssMI GATC 5 cut(s) 30, 67, 166, 187, 272
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 4 cut(s) 118, 134, 143, 176
BstC8I GCNNGC 2 cut(s) 124, 362
BstDEI CTNAG 4 cut(s) 184, 227, 238, 352
BstDSI CCRYGG 2 cut(s) 175, 204
BstEII GGTNACC 1 cut(s) 221
BstFNI CGCG 2 cut(s) 312, 446
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 5 cut(s) 33, 70, 169, 190, 275
BstMAI GTCTC 2 cut(s) 10, 226
BstMBI GATC 5 cut(s) 30, 67, 166, 187, 272
BstMWI GCNNNNNNNGC 5 cut(s) 155, 357, 416, 437, 479
BstNI CCWGG 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 304, 457
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 2 cut(s) 312, 446
BstV1I GCAGC 2 cut(s) 170, 460
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
Bsu36I CCTNAGG 1 cut(s) 227
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 2 cut(s) 175, 204
Cac8I GCNNGC 2 cut(s) 124, 362
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 415, 427
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 130
CviAII CATG 1 cut(s) 205
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 4 cut(s) 184, 227, 238, 352
DpnI GATC 5 cut(s) 32, 69, 168, 189, 274
DpnII GATC 5 cut(s) 30, 67, 166, 187, 272
DraIII CACNNNGTG 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 208
FaiI YATR 4 cut(s) 206, 321, 323, 327
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 451
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 6 cut(s) 159, 310, 411, 474, 477, 480
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 6 cut(s) 159, 310, 411, 474, 477, 480
FspI TGCGCA 1 cut(s) 280
GlaI GCGC 1 cut(s) 280
GluI GCNGC 6 cut(s) 159, 310, 411, 474, 477, 480
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 309
HapII CCGG 3 cut(s) 416, 428, 459
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 416, 428, 459
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 4 cut(s) 55, 91, 253, 355
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 86, 305
HpyCH4III ACNGT 4 cut(s) 118, 134, 143, 176
HpyCH4V TGCA 2 cut(s) 360, 476
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 357, 416, 437, 479
HpyF3I CTNAG 4 cut(s) 184, 227, 238, 352
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 5 cut(s) 30, 67, 166, 187, 272
LmnI GCTCC 1 cut(s) 445
Lsp1109I GCAGC 2 cut(s) 170, 460
MaeIII GTNAC 4 cut(s) 151, 208, 221, 433
MalI GATC 5 cut(s) 32, 69, 168, 189, 274
MboI GATC 5 cut(s) 30, 67, 166, 187, 272
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 162, 276
MnlI CCTC 3 cut(s) 212, 222, 381
MroXI GAANNNNTTC 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 3 cut(s) 416, 428, 459
MspR9I CCNGG 2 cut(s) 306, 459
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 2 cut(s) 312, 446
MwoI GCNNNNNNNGC 5 cut(s) 155, 357, 416, 437, 479
NciI CCSGG 1 cut(s) 459
NcoI CCATGG 1 cut(s) 204
NdeII GATC 5 cut(s) 30, 67, 166, 187, 272
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 136, 414
NmuCI GTSAC 2 cut(s) 208, 433
NsbI TGCGCA 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 294
Pfl23II CGTACG 1 cut(s) 129
PkrI GCNGC 6 cut(s) 160, 311, 412, 475, 478, 481
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 304
PspEI GGTNACC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 304
PspLI CGTACG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 136, 414
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 320
SatI GCNGC 6 cut(s) 159, 310, 411, 474, 477, 480
Sau3AI GATC 5 cut(s) 30, 67, 166, 187, 272
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 306, 459
SduI GDGCHC 1 cut(s) 128
SetI ASST 8 cut(s) 78, 151, 223, 228, 353, 403, 442, 475
SfcI CTRYAG 1 cut(s) 474
SgrAI CRCCGGYG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SsiI CCGC 5 cut(s) 310, 410, 431, 444, 480
StyD4I CCNGG 2 cut(s) 304, 457
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 118, 134, 143, 176
TaqI TCGA 1 cut(s) 66
TauI GCSGC 3 cut(s) 312, 413, 482
TseFI GTSAC 2 cut(s) 208, 433
TseI GCWGC 3 cut(s) 158, 473, 476
Tsp45I GTSAC 2 cut(s) 208, 433
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.