Rw7G040650

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003160
Physical Location & Seq
Forward (+)
63317342 .. 63319018
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040650.1

Sequence Viewer

Length: 642 bp
ATGTCTTTAATTCAATCAAACGGTCCAGATTCGCTCCTCAGTTTCTGGCCCTCCTCTTTATCTTCCCCTCCTTCTCTTCAGCATTTAACCCCCCTCCCTCTCGTTTCTCCTCTCTCTCTCTCTCAGGATTTAGATTTAGAGAGAACAGCAGTTGTAGCAGTATTAATAGTTGTAGCAGAAGAGAGAAACAAAGAAGTAAGAGGAGCAAAAATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAGATCACCTTTGATCTGAACACTGAAGCTCAACCTCAGCCCTCAGATCCCCACAACCCCTTCAGCCCTCTGGCTTTTGATGGCCTTGTGGTGAAGATGGCCTCCTCATCACCCTCACCTAGAAACCACAGAAGGAACTCGGCTGATTTCGTTGAGACTCCTCACTTCTTGAGGGCTTGCGGTCTCTGCAAACGCCGCCTTGTTCCTGGCCGTGATATTTACATGTACAGAGGTGATACTGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATGACCCTTGATGAGAGGAATGACAAGTGTTCATCTTCGGCTTCCACAGCCGTCGTTGCCGGACACCATGTCTCTTCCAAAGGGGAAACTGTGGCCGCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

213

Amino Acids

23.34

Weight (kDa)

8.67

Isoelectric Point (pI)

75.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 137 - 185 1.5e-26 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 444, 460, 633
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 2 cut(s) 472, 630
AcuI CTGAAG 3 cut(s) 62, 309, 310
AfaI GTAC 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 14
AhdI GACNNNNNGTC 1 cut(s) 605
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 4 cut(s) 220, 413, 452, 613
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 45
AoxI GGCC 6 cut(s) 47, 233, 346, 363, 472, 630
ApeKI GCWGC 1 cut(s) 529
AseI ATTAAT 1 cut(s) 164
AspS9I GGNCC 3 cut(s) 23, 48, 249
AsuHPI GGTGA 5 cut(s) 262, 366, 367, 372, 509
AvaII GGWCC 2 cut(s) 23, 249
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 338, 355
BceAI ACGGC 2 cut(s) 459, 572
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 4 cut(s) 220, 413, 452, 613
BfaI CTAG 2 cut(s) 384, 518
BfmI CTRYAG 1 cut(s) 511
BisI GCNGC 3 cut(s) 460, 530, 633
BlsI GCNGC 3 cut(s) 461, 531, 634
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 2 cut(s) 23, 249
BmeRI GACNNNNNGTC 1 cut(s) 605
BmgT120I GGNCC 3 cut(s) 23, 48, 249
BmrFI CCNGG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 454
BsaI GGTCTC 2 cut(s) 220, 452
BsaJI CCNNGG 1 cut(s) 230
Bse118I RCCGGY 1 cut(s) 525
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 230
BseMII CTCAG 4 cut(s) 52, 137, 314, 321
BseRI GAGGAG 6 cut(s) 26, 43, 99, 216, 358, 414
BseXI GCAGC 1 cut(s) 541
BshFI GGCC 6 cut(s) 49, 235, 348, 365, 474, 632
BsiSI CCGG 2 cut(s) 526, 597
BsmAI GTCTC 4 cut(s) 220, 413, 452, 613
BsnI GGCC 6 cut(s) 49, 235, 348, 365, 474, 632
Bso31I GGTCTC 2 cut(s) 220, 452
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 3 cut(s) 267, 277, 310
BspACI CCGC 3 cut(s) 444, 460, 633
BspANI GGCC 6 cut(s) 49, 235, 348, 365, 474, 632
BspCNI CTCAG 4 cut(s) 51, 136, 313, 320
BspMAI CTGCAG 1 cut(s) 515
BspPI GGATC 1 cut(s) 305
BspTNI GGTCTC 2 cut(s) 220, 452
BsrFI RCCGGY 1 cut(s) 525
BsrGI TGTACA 1 cut(s) 489
BssAI RCCGGY 1 cut(s) 525
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 3 cut(s) 267, 277, 310
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 23, 628
Bst6I CTCTTC 5 cut(s) 81, 174, 218, 239, 616
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 442, 527
BstDEI CTNAG 4 cut(s) 38, 123, 300, 307
BstKTI GATC 3 cut(s) 270, 280, 313
BstMAI GTCTC 4 cut(s) 220, 413, 452, 613
BstMBI GATC 3 cut(s) 267, 277, 310
BstMWI GCNNNNNNNGC 5 cut(s) 155, 450, 459, 584, 593
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 2 cut(s) 262, 490
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 511
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 6 cut(s) 49, 235, 348, 365, 474, 632
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 442, 527
CaiI CAGNNNCTG 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 525
Cfr13I GGNCC 3 cut(s) 23, 48, 249
Csp6I GTAC 1 cut(s) 490
CviAII CATG 3 cut(s) 259, 487, 605
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 4 cut(s) 38, 123, 300, 307
DpnI GATC 3 cut(s) 269, 279, 312
DpnII GATC 3 cut(s) 267, 277, 310
DriI GACNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 2 cut(s) 472, 630
Eam1104I CTCTTC 5 cut(s) 81, 174, 218, 239, 616
Eam1105I GACNNNNNGTC 1 cut(s) 605
EarI CTCTTC 5 cut(s) 81, 174, 218, 239, 616
Eco130I CCWWGG 1 cut(s) 230
Eco147I AGGCCT 1 cut(s) 235
Eco31I GGTCTC 2 cut(s) 220, 452
Eco47I GGWCC 2 cut(s) 23, 249
Eco57I CTGAAG 3 cut(s) 62, 309, 310
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 3 cut(s) 262, 490, 608
FaiI YATR 3 cut(s) 260, 488, 606
FatI CATG 3 cut(s) 258, 486, 604
Fnu4HI GCNGC 3 cut(s) 460, 530, 633
Fsp4HI GCNGC 3 cut(s) 460, 530, 633
FspBI CTAG 2 cut(s) 384, 518
GluI GCNGC 3 cut(s) 460, 530, 633
HaeIII GGCC 6 cut(s) 49, 235, 348, 365, 474, 632
HapII CCGG 2 cut(s) 526, 597
Hin1II CATG 3 cut(s) 262, 490, 608
HinfI GANTC 2 cut(s) 29, 421
HpaII CCGG 2 cut(s) 526, 597
HphI GGTGA 5 cut(s) 262, 366, 367, 372, 509
Hpy188I TCNGA 3 cut(s) 265, 282, 310
Hpy188III TCNNGA 4 cut(s) 26, 125, 433, 518
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 3 cut(s) 81, 334, 390
HpyCH4III ACNGT 2 cut(s) 23, 628
HpyCH4V TGCA 2 cut(s) 453, 513
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 450, 459, 584, 593
HpyF3I CTNAG 4 cut(s) 38, 123, 300, 307
Hsp92II CATG 3 cut(s) 262, 490, 608
KroI GCCGGC 1 cut(s) 525
KroNI GCCGGC 1 cut(s) 527
Kzo9I GATC 3 cut(s) 267, 277, 310
LmnI GCTCC 2 cut(s) 39, 203
LpnPI CCDG 8 cut(s) 31, 39, 110, 320, 456, 483, 539, 610
Lsp1109I GCAGC 1 cut(s) 541
MaeI CTAG 2 cut(s) 384, 518
MalI GATC 3 cut(s) 269, 279, 312
MboI GATC 3 cut(s) 267, 277, 310
MboII GAAGA 8 cut(s) 54, 68, 191, 235, 256, 370, 564, 603
MflI RGATCY 1 cut(s) 310
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 415
MroNI GCCGGC 1 cut(s) 525
MseI TTAA 3 cut(s) 8, 86, 164
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 2 cut(s) 526, 597
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 5 cut(s) 155, 450, 459, 584, 593
NaeI GCCGGC 1 cut(s) 527
NdeII GATC 3 cut(s) 267, 277, 310
NgoMIV GCCGGC 1 cut(s) 525
NlaIII CATG 3 cut(s) 262, 490, 608
NmeAIII GCCGAG 1 cut(s) 383
NspI RCATGY 2 cut(s) 262, 490
PceI AGGCCT 1 cut(s) 235
PciI ACATGT 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 461, 531, 634
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspPI GGNCC 3 cut(s) 23, 48, 249
PstI CTGCAG 1 cut(s) 515
PstNI CAGNNNCTG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 3 cut(s) 8, 86, 164
SatI GCNGC 3 cut(s) 460, 530, 633
Sau3AI GATC 3 cut(s) 267, 277, 310
Sau96I GGNCC 3 cut(s) 23, 48, 249
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 1 cut(s) 471
SetI ASST 5 cut(s) 275, 295, 301, 385, 499
SfcI CTRYAG 1 cut(s) 511
SinI GGWCC 2 cut(s) 23, 249
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 1 cut(s) 9
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 3 cut(s) 444, 460, 633
SspMI CTAG 2 cut(s) 384, 518
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 23, 628
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 462, 635
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 8, 86, 164
Tru9I TTAA 3 cut(s) 8, 86, 164
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 257, 558
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 23, 249
VspI ATTAAT 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 2 cut(s) 262, 490
XspI CTAG 2 cut(s) 384, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.