Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003160

Physical Location & Seq

Genomic Coordinates Reverse (-)

14903896 .. 14904912

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAAATCACCTTCGATCTGAACACCATTAGTACTGGGGCACCTCATTCTCAACCGTCCGATCCCAACAACCCTTATCAGCCTCCGGCCTTATGGGGTAGTGGTGGTGGTGGTGGTGGGCTTGATGGGTTGGATCAACGGCTTATGATGAAGTTGCCTTCACCATCATCAGCATCGCCAAGAAACCACAGAAGAAATTCTGCTGATTTTGGAGAAACTGCCCACTTCTTGAAGGCTTGTGGTCTCTGCAAACGCCGACTTATTCCCGGCCGCGATATTTACATGTACAGAGGTGACACAGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATGAATCTTGATGAGAGGAAGGACAAGTGTTCTTCCATCGCTGGACACCAAGTCTCCGCCAAAGGCGAAACCATGGTCGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

157

Amino Acids

17.06

Weight (kDa)

9.43

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22160 AT1G78020
fragaria_vesca	FvH4_1g21440 FvH4_5g37970 FvH4_5g37970
malus_domestica	MD00G1073400.v1.1 MD01G1025300.v1.1 MD08G1178500.v1.1 MD15G1363900.v1.1
prunus_persica	Prupe.1G512200_v2.0.a1 Prupe.6G180700_v2.0.a1
pyrus_communis	pycom01g05330 pycom08g15280 pycom15g29830 pycom15g32690
rosa_chinensis	RchiOBHm_Chr2g0115261 RchiOBHm_Chr7g0239911
rosa_laevigata	RLG00000000719 RLG00000018170
rosa_multiflora	Rmu_co8373487.1_g000001 Rmu_sc0000540.1_g000047 Rmu_sc0001626.1_g000049 Rmu_sc0002784.1_g000062
rosa_roxburghii	Rroxscaffold_2G00130800 Rroxscaffold_3G00220690
rosa_rugosa	Rorug02G0195400 Rorug07G0331100
rosa_samantha	Rh2AG253300 Rh2BG263500 Rh2CG258200 Rh2DG261500 Rh7AG484500 Rh7BG457700 Rh7CG502000 Rh7DG470200
rosa_wichuraiana	Rw2G019800 Rw7G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccII	CGCG	1 cut(s)	324
AciI	CCGC	2 cut(s)	322, 441
AclWI	GGATC	2 cut(s)	107, 192
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	2 cut(s)	85, 338
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	283
AhdI	GACNNNNNGTC	1 cut(s)	434
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	10, 299, 442
AlwI	GGATC	2 cut(s)	107, 192
AoxI	GGCC	3 cut(s)	23, 138, 319
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	52, 204, 356
AvaII	GGWCC	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	170, 223, 428
BceAI	ACGGC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	3 cut(s)	10, 299, 442
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	2 cut(s)	322, 377
BlsI	GCNGC	2 cut(s)	323, 378
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	39
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	318
BsaI	GGTCTC	2 cut(s)	10, 299
BsaJI	CCNNGG	2 cut(s)	20, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	20, 456
BseNI	ACTGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	94
BseX3I	CGGCCG	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	25, 140, 321
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	137, 318, 373
BsmAI	GTCTC	3 cut(s)	10, 299, 442
BsnI	GGCC	3 cut(s)	25, 140, 321
Bso31I	GGTCTC	2 cut(s)	10, 299
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	67, 112, 184
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	322, 441
BspANI	GGCC	3 cut(s)	25, 140, 321
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	362
BspPI	GGATC	2 cut(s)	107, 192
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	2 cut(s)	10, 299
BsrFI	RCCGGY	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	20, 456
BssMI	GATC	3 cut(s)	67, 112, 184
BssT1I	CCWWGG	2 cut(s)	20, 456
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	2 cut(s)	8, 29
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	3 cut(s)	70, 115, 187
BstMAI	GTCTC	3 cut(s)	10, 299, 442
BstMBI	GATC	3 cut(s)	67, 112, 184
BstMCI	CGRYCG	1 cut(s)	322
BstNSI	RCATGY	2 cut(s)	52, 337
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	94
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	388
BstZI	CGGCCG	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	25, 140, 321
BtgI	CCRYGG	1 cut(s)	456
BtgZI	GCGATG	2 cut(s)	210, 406
Cac8I	GCNNGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	84, 337
CviAII	CATG	3 cut(s)	49, 334, 457
CviJI	RGCY	8 cut(s)	25, 133, 140, 172, 193, 287, 321, 353
CviKI_1	RGCY	8 cut(s)	25, 133, 140, 172, 193, 287, 321, 353
CviQI	GTAC	2 cut(s)	84, 337
DpnI	GATC	3 cut(s)	69, 114, 186
DpnII	GATC	3 cut(s)	67, 112, 184
DriI	GACNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	319
EagI	CGGCCG	1 cut(s)	319
Eam1104I	CTCTTC	2 cut(s)	8, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	434
EarI	CTCTTC	2 cut(s)	8, 29
EciI	GGCGGA	1 cut(s)	430
EclXI	CGGCCG	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	20, 456
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	2 cut(s)	10, 299
Eco47I	GGWCC	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	20, 456
ErhI	CCWWGG	2 cut(s)	20, 456
FaeI	CATG	3 cut(s)	52, 337, 460
FaiI	YATR	5 cut(s)	50, 145, 197, 335, 458
FatI	CATG	3 cut(s)	48, 333, 456
Fnu4HI	GCNGC	2 cut(s)	322, 377
Fsp4HI	GCNGC	2 cut(s)	322, 377
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	322, 377
HaeIII	GGCC	3 cut(s)	25, 140, 321
HapII	CCGG	3 cut(s)	137, 318, 373
Hin1II	CATG	3 cut(s)	52, 337, 460
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	3 cut(s)	137, 318, 373
HphI	GGTGA	3 cut(s)	52, 204, 356
Hpy188I	TCNGA	3 cut(s)	55, 72, 112
Hpy188III	TCNNGA	3 cut(s)	280, 365, 392
HpyAV	CCTTC	4 cut(s)	73, 219, 277, 397
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	300, 360
Hsp92II	CATG	3 cut(s)	52, 337, 460
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	3 cut(s)	67, 112, 184
LpnPI	CCDG	5 cut(s)	72, 150, 331, 386, 411
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	3 cut(s)	69, 114, 186
MboI	GATC	3 cut(s)	67, 112, 184
MboII	GAAGA	4 cut(s)	25, 46, 255, 408
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	6 cut(s)	30, 36, 105, 144, 335, 393
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	247
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	3 cut(s)	137, 318, 373
MspR9I	CCNGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	324
NaeI	GCCGGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	3 cut(s)	67, 112, 184
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	3 cut(s)	52, 337, 460
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	2 cut(s)	52, 337
PceI	AGGCCT	1 cut(s)	25
PciI	ACATGT	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	323, 378
PscI	ACATGT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	85, 338
RsaNI	GTAC	2 cut(s)	84, 337
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	2 cut(s)	322, 377
Sau3AI	GATC	3 cut(s)	67, 112, 184
Sau96I	GGNCC	1 cut(s)	39
ScaI	AGTACT	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	65, 97, 346, 355
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	247
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	2 cut(s)	322, 441
SspMI	CTAG	1 cut(s)	365
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	20, 456
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	247
TatI	WGTACW	2 cut(s)	83, 336
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	47, 215, 401
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	247
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	2 cut(s)	52, 337
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.