FvH4_5g37970

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003160
Physical Location & Seq
Forward (+)
28007292 .. 28008882
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37970.t1

Sequence Viewer

Length: 414 bp
ATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAGATCACCTTTGATCTCAGCACTGAAGCTCAGCCTCAGCCTTCAGATCCCCTCAACCCCTTTAGCCCTCTGGCCGTTGATGGCCTCATGGTGAAGATGGCCTCCTCATCATCACCCTCACCCAGAAACCACAGAAGGAACTCTGCTGATTTCGTTGAGACTCCTCACTTCTTGAGGGCTTGTGGTCTCTGCAAACGCCGCCTTGTTCCTGGCCGCGATATTTACATGTACAGTCTAGAGTGCCGGCAGCAACAGATGACCCTTGATGAGAGGAAGGATAAGTGTGCATCTTCGGCTTCCAACGCCGTCGTTGCCGGACACCATGTCTCTTCCAAAGGGGAAACTATGGCCGCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

138

Amino Acids

15.13

Weight (kDa)

9.46

Isoelectric Point (pI)

80.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 67 - 110 4e-15 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AciI CCGC 3 cut(s) 253, 268, 405
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 3 cut(s) 126, 265, 402
AcuI CTGAAG 2 cut(s) 81, 99
AfaI GTAC 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 279
AhdI GACNNNNNGTC 1 cut(s) 377
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 4 cut(s) 10, 206, 245, 385
AlwI GGATC 1 cut(s) 95
AoxI GGCC 6 cut(s) 23, 126, 136, 153, 265, 402
ApeKI GCWGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 4 cut(s) 52, 157, 159, 165
AvaII GGWCC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 128, 145
BceAI ACGGC 2 cut(s) 113, 344
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 4 cut(s) 10, 206, 245, 385
BfaI CTAG 1 cut(s) 290
BisI GCNGC 4 cut(s) 253, 268, 302, 405
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 4 cut(s) 254, 269, 303, 406
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 90
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 247
BsaI GGTCTC 2 cut(s) 10, 245
BsaJI CCNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 297
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 85, 98, 104
BseRI GAGGAG 2 cut(s) 148, 207
BseXI GCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 6 cut(s) 25, 128, 138, 155, 267, 404
BsiSI CCGG 2 cut(s) 298, 369
BsmAI GTCTC 4 cut(s) 10, 206, 245, 385
BsnI GGCC 6 cut(s) 25, 128, 138, 155, 267, 404
Bso31I GGTCTC 2 cut(s) 10, 245
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 3 cut(s) 57, 67, 100
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 3 cut(s) 253, 268, 405
BspANI GGCC 6 cut(s) 25, 128, 138, 155, 267, 404
BspCNI CTCAG 3 cut(s) 84, 97, 103
BspFNI CGCG 1 cut(s) 270
BspPI GGATC 1 cut(s) 95
BspTNI GGTCTC 2 cut(s) 10, 245
BsrFI RCCGGY 1 cut(s) 297
BsrGI TGTACA 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 57, 67, 100
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 3 cut(s) 8, 29, 388
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 3 cut(s) 71, 84, 90
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 3 cut(s) 60, 70, 103
BstMAI GTCTC 4 cut(s) 10, 206, 245, 385
BstMBI GATC 3 cut(s) 57, 67, 100
BstMWI GCNNNNNNNGC 4 cut(s) 252, 347, 356, 365
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 52, 283
BstSCI CCNGG 1 cut(s) 262
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 6 cut(s) 25, 128, 138, 155, 267, 404
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 299
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 283
CviAII CATG 4 cut(s) 49, 142, 280, 377
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 71, 84, 90
DpnI GATC 3 cut(s) 59, 69, 102
DpnII GATC 3 cut(s) 57, 67, 100
DriI GACNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 3 cut(s) 126, 265, 402
Eam1104I CTCTTC 3 cut(s) 8, 29, 388
Eam1105I GACNNNNNGTC 1 cut(s) 377
EarI CTCTTC 3 cut(s) 8, 29, 388
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 2 cut(s) 10, 245
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 81, 99
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 4 cut(s) 52, 145, 283, 380
FaiI YATR 5 cut(s) 50, 143, 281, 378, 401
FatI CATG 4 cut(s) 48, 141, 279, 376
Fnu4HI GCNGC 4 cut(s) 253, 268, 302, 405
Fsp4HI GCNGC 4 cut(s) 253, 268, 302, 405
FspBI CTAG 1 cut(s) 290
GluI GCNGC 4 cut(s) 253, 268, 302, 405
HaeIII GGCC 6 cut(s) 25, 128, 138, 155, 267, 404
HapII CCGG 2 cut(s) 298, 369
Hin1II CATG 4 cut(s) 52, 145, 283, 380
HinfI GANTC 1 cut(s) 214
HpaII CCGG 2 cut(s) 298, 369
HphI GGTGA 4 cut(s) 52, 157, 159, 165
Hpy188I TCNGA 2 cut(s) 55, 100
Hpy188III TCNNGA 2 cut(s) 226, 290
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 3 cut(s) 105, 183, 322
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 246, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 347, 356, 365
HpyF3I CTNAG 3 cut(s) 71, 84, 90
Hsp92II CATG 4 cut(s) 52, 145, 283, 380
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 3 cut(s) 57, 67, 100
LpnPI CCDG 6 cut(s) 110, 190, 249, 276, 311, 382
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 350
MaeI CTAG 1 cut(s) 290
MalI GATC 3 cut(s) 59, 69, 102
MboI GATC 3 cut(s) 57, 67, 100
MboII GAAGA 5 cut(s) 25, 46, 160, 336, 375
MflI RGATCY 1 cut(s) 100
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 298, 369
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 4 cut(s) 252, 347, 356, 365
NaeI GCCGGC 1 cut(s) 299
NdeII GATC 3 cut(s) 57, 67, 100
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 4 cut(s) 52, 145, 283, 380
NspI RCATGY 2 cut(s) 52, 283
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 299
PkrI GCNGC 4 cut(s) 254, 269, 303, 406
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 4 cut(s) 253, 268, 302, 405
Sau3AI GATC 3 cut(s) 57, 67, 100
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 264
SetI ASST 2 cut(s) 65, 85
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 3 cut(s) 253, 268, 405
SspMI CTAG 1 cut(s) 290
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 287
TatI WGTACW 1 cut(s) 282
TauI GCSGC 3 cut(s) 255, 270, 407
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 39
XbaI TCTAGA 1 cut(s) 289
XceI RCATGY 2 cut(s) 52, 283
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.