Rorug02G0195400

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003160
Physical Location & Seq
Reverse (-)
18234952 .. 18235221
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0195400.1

Sequence Viewer

Length: 270 bp
ATGGAAGTGATTGAGCTCAACACAGACACGGTTTTCCGCGTTGGCCGGGCTTCCTATGCCGAGCCTTTCCACTTGTGGCAAGGTTCACTTGCTGCAGACTTCACTACTAACTTCTCTTTCATTGTGGACACTGTTAACAGAACCCTAGGCCAGTTTGCTGATGGATTTGTCTTCTTCCTTGCTCCGGTTCACTTTTCGATCCCACCTGACTCTGCTGGTACTGGTCTAGAATTGTATAACTCCACCACTCGTTTTGCCTCCCAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

89

Amino Acids

9.87

Weight (kDa)

4.55

Isoelectric Point (pI)

16.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 2 - 86 6.6e-15 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 43
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 184
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 193
AoxI GGCC 2 cut(s) 43, 148
ApeKI GCWGC 1 cut(s) 92
AspA2I CCTAGG 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 145
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 155
BcnI CCSGG 1 cut(s) 47
BfaI CTAG 2 cut(s) 146, 227
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 93
BlnI CCTAGG 1 cut(s) 145
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 151, 226
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 184
BseNI ACTGG 2 cut(s) 151, 226
BseXI GCAGC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 45, 150
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 46, 185
BslI CCNNNNNNNGG 1 cut(s) 184
BsnI GGCC 2 cut(s) 45, 150
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 45, 150
BspFNI CGCG 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 193
BsrI ACTGG 2 cut(s) 151, 226
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 31, 133
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 45, 150
BtsIMutI CAGTG 1 cut(s) 129
Csp6I GTAC 1 cut(s) 219
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviJI RGCY 5 cut(s) 16, 45, 50, 64, 150
CviKI_1 RGCY 5 cut(s) 16, 45, 50, 64, 150
CviQI GTAC 1 cut(s) 219
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 2 cut(s) 57, 237
FalI AAGNNNNNCTT 2 cut(s) 72, 104
Fnu4HI GCNGC 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 2 cut(s) 146, 227
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 2 cut(s) 45, 150
HapII CCGG 2 cut(s) 46, 185
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 209
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 2 cut(s) 46, 185
Hpy166II GTNNAC 4 cut(s) 86, 127, 136, 190
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 4 cut(s) 86, 127, 136, 190
HpyCH4III ACNGT 2 cut(s) 31, 133
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 59, 164, 198, 201, 207, 219
Lsp1109I GCAGC 1 cut(s) 79
MaeI CTAG 2 cut(s) 146, 227
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 163, 166
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 1 cut(s) 268
MseI TTAA 1 cut(s) 135
MspI CCGG 2 cut(s) 46, 185
MspR9I CCNGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 47
NdeII GATC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 85
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 97
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 18
SetI ASST 3 cut(s) 18, 85, 208
SfcI CTRYAG 1 cut(s) 93
Sse9I AATT 1 cut(s) 230
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 146, 227
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 31, 133
TaqI TCGA 1 cut(s) 197
TasI AATT 1 cut(s) 230
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmaJI CCTAGG 1 cut(s) 145
XspI CTAG 2 cut(s) 146, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.